Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C13orf23 Gene 0 70.52 85.10 59.96 70.86 110.54 143.95 113.09 94.58 77.57 149.14 264.96 391.38 487.13 276.35 190.43 245.70 236.77 105.24 154.51 96.70 55.40 62.88 54.44 2 350125 Transcript 0 0.00 0.00 0.77 0.03 1.54 1.97 0.99 1.25 0.00 1.98 10.34 0.00 0.00 10.96 4.86 16.64 15.93 2.22 1.67 0.96 4.08 2.71 1.03 3 352251 Transcript 0 23.81 81.49 21.73 30.48 102.51 112.26 156.28 63.47 72.72 134.97 286.82 714.41 609.52 261.47 110.69 191.33 241.31 35.43 101.17 104.47 22.35 69.88 45.82 4 418503 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 436678 Transcript 0 1.84 2.89 0.00 0.04 2.85 1.66 2.90 2.06 2.23 4.14 10.66 10.61 4.24 8.02 2.06 1.15 2.56 0.00 0.00 3.50 3.48 1.34 2.08 6 379609 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 496138 Transcript 0 5.05 6.29 4.15 0.51 9.24 3.54 9.88 5.87 6.59 7.97 21.37 65.29 63.97 12.43 3.71 12.79 13.17 2.62 12.48 5.64 2.59 3.71 5.67 8 484434 Transcript 0 0.31 1.91 1.20 0.24 1.29 1.36 2.36 0.87 1.06 1.11 1.58 5.11 4.73 2.17 0.36 2.50 3.02 0.60 1.00 2.56 0.53 0.75 1.20 9 468017 Transcript 0 0.00 2.43 1.39 0.00 0.00 2.16 1.99 0.00 1.79 0.00 9.74 0.00 7.14 0.00 15.45 12.48 0.00 2.45 0.00 0.00 2.35 0.00 0.00 10 492646 Transcript 0 33.40 21.67 16.07 15.59 39.54 55.93 35.73 28.37 10.86 22.75 18.68 40.98 50.70 18.45 19.41 16.33 8.20 13.15 10.21 12.95 2.22 6.77 2.56 11 ER1a ExonRegion 0 0.00 0.00 0.77 0.03 1.54 1.97 0.99 1.25 0.00 1.98 10.34 0.00 0.00 10.96 4.86 16.64 15.93 2.22 1.67 0.96 4.08 2.71 1.03 12 E1_Ab KnownBoundary 0 0.00 2.76 1.63 1.66 4.33 8.18 4.50 4.64 0.00 3.09 23.06 6.30 5.68 24.55 8.90 50.24 43.01 9.58 7.62 0.00 11.31 5.69 7.17 13 ER1b ExonRegion 1 1.97 2.19 2.01 0.43 1.89 11.43 4.59 4.90 2.42 13.33 75.30 9.40 2.02 60.61 30.34 52.22 66.97 12.56 11.61 8.66 14.43 3.80 14.12 14 E1_Ac KnownBoundary 1 10.67 19.60 4.55 1.93 8.23 50.08 32.15 2.14 10.47 27.94 87.86 11.55 6.82 94.36 47.59 116.04 48.81 52.60 45.46 26.65 17.79 8.21 30.99 15 ER1c ExonRegion 1 10.65 38.85 10.93 13.09 30.45 57.63 58.78 30.01 34.47 64.81 147.05 173.93 144.50 203.87 55.75 109.04 136.12 39.87 65.48 57.40 32.82 29.63 27.68 16 E1a_E2a KnownJunction 0 18.37 57.82 12.48 26.44 110.78 135.15 170.29 42.88 65.51 129.85 243.17 612.35 474.81 249.28 113.98 115.78 188.31 31.55 81.13 89.80 30.58 53.21 35.17 17 E1a_E3c KnownJunction 0 2.89 3.29 1.83 10.85 10.78 7.67 8.35 10.02 8.25 10.48 14.37 18.91 20.29 15.89 4.45 7.52 17.48 3.48 12.42 9.01 9.27 4.65 4.35 18 ER2a ExonRegion 0 24.69 72.99 22.26 27.69 101.92 98.64 137.43 68.25 71.28 131.81 315.79 682.22 603.81 280.31 103.87 190.49 267.82 35.50 108.40 98.39 20.47 67.59 47.92 19 E2a_E3c KnownJunction 1 28.38 113.66 30.45 37.32 94.82 103.01 161.11 79.27 81.36 143.25 301.50 848.68 749.95 254.81 114.22 267.71 267.79 39.26 113.98 125.21 16.00 88.85 54.38 20 ER3a ExonRegion 0 1.84 2.89 0.00 0.04 2.85 1.66 2.90 2.06 2.23 4.14 10.66 10.61 4.24 8.02 2.06 1.15 2.56 0.00 0.00 3.50 3.48 1.34 2.08 21 ER3b ExonRegion 0 7.32 12.67 2.09 5.74 13.66 6.04 25.90 11.38 7.75 10.99 23.92 61.69 54.81 28.02 7.19 16.22 23.79 2.31 5.24 8.16 6.43 9.85 10.83 22 E3_Ac KnownBoundary 0 16.67 6.45 5.20 9.69 3.48 2.90 49.82 12.32 6.54 4.27 5.32 94.38 93.01 21.72 13.97 20.17 11.87 2.57 3.95 8.12 5.68 13.90 18.95 23 ER3c ExonRegion 1 35.23 80.75 32.74 42.29 79.80 133.41 134.73 71.63 79.12 160.38 338.71 794.84 684.26 355.01 115.45 244.72 281.30 45.05 119.83 128.50 45.69 59.90 69.31 24 E3a_E4a KnownJunction 0 47.79 88.01 25.13 36.83 101.02 132.20 119.37 73.48 80.84 172.10 387.20 702.98 496.88 290.42 118.92 203.96 295.09 72.92 70.97 130.45 40.65 60.13 63.42 25 ER4a ExonRegion 0 33.35 88.58 33.19 40.26 86.50 122.65 114.36 83.42 78.41 186.16 373.03 887.08 646.88 358.37 143.84 252.00 325.40 73.29 129.86 138.66 44.86 84.39 58.58 26 E4a_E5a KnownJunction 1 53.19 133.46 41.87 43.32 91.17 123.45 168.13 86.46 76.13 196.87 370.25 1085.30 786.96 441.99 170.34 312.57 308.56 63.30 165.84 153.40 50.78 77.40 38.93 27 ER5a ExonRegion 0 61.49 127.70 32.99 36.67 118.81 141.96 171.82 73.17 82.67 180.76 419.27 835.82 907.37 397.37 133.27 305.50 344.21 82.24 154.39 121.55 50.26 69.84 56.58 28 E5a_E6b KnownJunction 0 69.57 194.83 42.75 48.51 101.10 180.41 144.41 80.46 104.95 182.31 368.51 906.15 996.69 428.69 161.44 448.60 298.18 115.53 249.23 133.91 77.53 77.34 42.85 29 ER6a ExonRegion 0 5.05 6.29 4.15 0.51 9.24 3.54 9.88 5.87 6.59 7.97 21.37 65.29 63.97 12.43 3.71 12.79 13.17 2.62 12.48 5.64 2.59 3.71 5.67 30 E6_Ab KnownBoundary 0 10.52 3.16 7.13 0.00 6.96 11.30 18.02 8.75 12.09 12.71 18.43 73.97 74.02 11.71 0.00 15.98 4.11 2.45 3.95 8.95 5.56 13.41 12.04 31 ER6b ExonRegion 0 42.62 126.54 56.29 50.80 120.51 201.55 172.60 115.29 127.10 211.38 494.56 965.39 998.93 453.10 177.45 390.62 413.93 138.98 250.98 138.68 59.80 110.69 83.91 32 E6a_E7a KnownJunction 0 68.46 106.36 69.10 59.80 219.78 248.66 239.23 104.94 145.63 216.56 514.60 1026.33 1115.51 516.04 233.39 398.44 399.06 114.83 241.98 167.02 94.21 123.14 98.34 33 E6a_E11a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 6.36 0.00 1.79 2.55 0.00 6.30 13.64 2.83 10.75 0.00 8.79 0.00 4.80 0.00 0.00 0.00 4.35 34 ER7a ExonRegion 1 54.72 107.63 61.84 60.57 190.18 206.78 163.73 127.71 145.54 244.29 542.72 1033.62 1130.99 546.00 179.45 476.75 455.46 147.38 306.21 175.18 79.90 126.17 105.66 35 E7_Da NovelBoundary 0 60.53 139.51 62.30 71.29 155.26 109.71 150.06 161.59 155.06 267.03 662.96 1303.92 1461.11 524.64 242.29 570.36 538.29 180.07 316.06 236.56 95.88 102.20 118.40 36 E7c_E9a KnownJunction 1 47.27 128.99 68.57 66.69 98.05 114.76 216.88 149.67 177.98 243.77 517.13 1416.01 1243.91 516.10 223.50 519.95 416.08 177.34 376.48 175.01 101.62 170.05 87.50 37 E7c_E11a NovelJunction 0 3.33 9.47 0.00 4.13 8.66 11.58 0.00 2.22 4.75 11.36 6.32 12.60 13.64 11.36 6.18 4.36 0.00 25.78 4.33 8.63 0.00 5.63 3.93 38 ER7b ExonRegion 0 43.88 119.12 62.16 63.32 120.31 115.60 158.01 156.43 158.43 248.26 607.23 1432.22 1418.37 487.49 209.78 572.48 484.47 172.69 346.47 188.22 111.97 129.82 99.62 39 ER7c ExonRegion 0 42.33 114.90 65.56 62.35 119.74 144.87 180.06 152.54 166.74 240.56 569.72 1437.38 1302.66 559.10 204.54 594.43 462.95 168.61 370.30 172.87 105.78 155.74 97.64 40 ER8a ExonRegion 0 0.92 5.72 2.37 0.73 3.86 2.25 7.07 2.60 3.19 3.33 4.74 15.34 9.51 6.51 1.07 7.50 9.05 1.79 2.99 7.67 1.59 2.25 3.60 41 E8a_E13b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 ER9a ExonRegion 0 66.01 122.68 65.50 47.30 106.05 157.94 168.38 124.89 136.47 248.59 578.16 917.85 956.11 517.27 190.09 459.10 469.81 136.83 330.43 185.99 104.27 121.53 77.88 43 E9a_E10a KnownJunction 0 49.79 138.92 80.57 51.18 83.11 141.11 133.15 126.63 125.64 298.79 645.11 749.04 847.18 367.12 236.48 320.51 516.03 118.72 197.94 196.42 109.96 70.11 105.08 44 E9a_E11a NovelJunction 0 6.08 18.75 1.45 12.72 7.39 20.56 18.55 20.58 6.13 9.00 4.90 18.91 12.99 12.13 5.19 4.36 9.44 8.62 0.00 17.07 0.00 2.88 0.00 45 ER10a ExonRegion 0 70.45 142.09 58.94 38.76 113.15 177.69 151.84 123.24 119.83 253.18 555.99 969.30 1062.10 476.00 246.67 428.53 514.98 128.47 230.41 175.86 108.84 102.76 98.60 46 E10a_E11a KnownJunction 0 80.98 91.56 56.09 59.23 173.77 221.80 224.83 133.00 152.52 283.61 518.50 1185.99 1194.40 503.21 308.80 419.46 538.10 128.55 217.61 191.82 98.04 96.14 76.49 47 ER11a ExonRegion 0 97.88 132.18 78.72 80.17 203.48 282.81 240.31 151.26 162.24 293.81 773.63 1500.30 1708.11 736.38 305.60 705.32 730.67 190.85 372.62 280.28 145.79 185.34 149.70 48 E11a_E12a KnownJunction 0 145.66 183.65 76.90 106.81 210.02 277.74 267.80 131.64 151.68 230.39 806.47 1694.35 1994.51 955.39 482.97 879.94 779.80 195.49 530.09 324.64 136.53 212.54 212.55 49 E11a_E13b NovelJunction 0 11.11 0.00 2.25 5.06 4.33 2.21 35.02 1.64 0.00 9.19 2.68 0.00 0.00 2.12 0.00 4.27 0.00 5.80 9.60 2.56 0.00 0.00 0.00 50 I11_SR3 SilentIntronRegion 0 1.52 2.22 5.69 10.52 23.36 18.26 25.20 10.90 7.79 18.43 21.54 56.92 31.72 9.51 8.12 8.08 20.73 7.64 2.68 23.14 2.23 6.39 3.30 51 I11_AR4 ActiveIntronRegion 0 13.21 17.53 5.25 7.04 20.90 26.09 26.15 15.73 13.03 17.02 20.84 40.37 40.78 17.60 11.58 17.99 20.20 11.12 11.79 16.12 3.29 6.26 3.22 52 E12_Aa NovelBoundary 0 62.60 46.70 21.50 26.57 46.01 48.10 78.87 47.19 19.73 39.25 52.49 98.28 95.77 33.67 30.04 65.62 42.92 35.15 79.91 22.82 5.25 19.41 3.59 53 ER12a ExonRegion 0 93.86 107.19 93.11 110.60 142.30 233.73 147.88 166.04 145.31 268.70 544.78 686.28 1094.18 571.83 387.77 549.30 501.65 269.64 337.07 187.93 128.26 119.25 121.72 54 E12_Ab KnownBoundary 0 76.16 82.49 79.77 63.96 106.54 92.45 142.34 69.54 58.04 132.40 139.30 127.84 157.13 106.60 183.94 119.54 166.25 44.27 102.78 51.90 61.47 57.68 11.10 55 ER12b ExonRegion 0 85.37 98.83 69.21 60.17 87.68 127.92 94.29 60.93 63.93 125.94 224.46 243.84 405.01 271.77 270.15 184.27 235.65 86.40 132.17 69.09 71.91 50.51 27.85 56 E12_Da NovelBoundary 0 16.45 2.76 7.60 1.37 26.57 55.88 14.84 14.70 5.38 14.29 9.79 31.36 26.30 11.95 26.70 11.45 21.79 3.40 4.71 5.37 2.53 0.00 4.35 57 E12a_E13b KnownJunction 0 142.47 100.25 90.80 78.74 111.21 168.82 118.49 93.81 66.87 168.32 226.06 298.60 387.64 277.89 342.30 180.04 209.16 89.62 153.42 76.64 63.26 79.42 65.30 58 I12 Intron 0 19.08 10.61 11.70 6.74 27.31 38.27 22.93 14.05 4.80 9.73 7.79 22.78 31.80 24.34 12.95 18.34 8.61 3.71 5.29 4.54 3.14 4.94 0.00 59 I12_AR1 ActiveIntronRegion 0 19.26 10.69 11.80 6.81 27.55 38.63 23.14 14.18 4.84 9.82 7.87 22.97 32.10 24.55 13.06 18.50 8.68 3.75 5.34 4.57 3.17 4.99 0.00 60 E13_Aa NovelBoundary 0 47.42 15.19 26.79 17.98 42.70 36.85 50.12 35.28 11.55 22.03 4.74 39.16 21.26 78.40 22.99 16.66 8.42 3.56 4.52 21.35 0.00 9.37 7.60 61 ER13a ExonRegion 0 33.40 21.67 16.07 15.59 39.54 55.93 35.73 28.37 10.86 22.75 18.68 40.98 50.70 18.45 19.41 16.33 8.20 13.15 10.21 12.95 2.22 6.77 2.56 62 E13_Ab KnownBoundary 0 55.42 14.87 20.96 19.05 27.42 53.32 38.95 30.03 13.34 35.22 29.90 20.11 79.86 32.73 19.04 31.27 12.62 19.86 25.22 29.27 2.59 13.84 16.05 63 ER13b ExonRegion 0 162.62 153.20 109.63 100.60 171.59 258.69 167.70 112.26 82.96 197.79 305.32 370.78 493.42 366.23 363.89 265.09 303.73 113.69 185.77 95.49 87.15 68.20 54.23 64 E13a_E14a KnownJunction 0 132.84 126.95 95.27 122.36 162.65 212.60 230.71 127.12 98.87 168.51 251.70 380.52 369.94 307.44 355.52 246.77 192.89 150.93 146.83 94.34 64.87 67.54 36.88 65 E13a_E14b KnownJunction 0 0.00 2.43 1.39 0.00 0.00 2.16 1.99 0.00 1.79 0.00 9.74 0.00 7.14 0.00 15.45 12.48 0.00 2.45 0.00 0.00 2.35 0.00 0.00 66 ER14a ExonRegion 0 115.16 136.65 113.20 125.97 234.20 228.73 191.42 126.72 96.53 186.64 317.01 325.10 448.15 355.36 375.56 333.57 279.25 137.84 216.12 96.43 88.36 64.46 64.40 67 E14_Da KnownBoundary 0 131.36 178.39 99.67 101.15 288.79 277.96 245.72 111.27 66.67 151.29 323.24 371.82 310.21 336.75 408.06 334.87 222.44 90.82 208.76 93.32 97.55 83.64 57.79 68 ER14b ExonRegion 0 120.10 159.56 98.31 129.75 268.88 255.84 232.95 132.25 100.84 193.47 323.34 321.93 287.78 295.30 376.34 262.54 248.41 103.81 175.93 86.09 68.37 53.74 53.24 69 E14_Ab KnownBoundary 0 181.14 185.10 86.99 144.34 351.70 345.09 315.50 120.22 111.98 194.78 351.09 366.72 232.29 244.51 398.05 207.55 291.63 92.69 155.58 96.32 55.11 34.47 52.16 70 ER14c ExonRegion 0 199.41 171.44 103.54 138.33 241.65 275.20 227.37 124.10 87.31 184.07 253.44 326.80 269.62 231.80 253.54 223.00 182.25 79.82 142.90 81.03 35.07 52.15 47.67 71 E14_Db KnownBoundary 0 296.57 167.34 81.66 141.84 312.39 313.91 250.27 122.52 102.57 166.87 132.30 363.87 181.16 175.70 143.89 177.90 101.26 40.67 154.08 91.91 5.07 72.32 26.89 72 ER14d ExonRegion 0 140.06 142.26 100.02 137.76 208.57 195.75 178.23 136.27 79.72 165.80 111.04 267.83 173.36 116.07 175.80 104.86 86.62 34.74 92.44 76.44 14.81 60.33 24.74 73 E14_Dc KnownBoundary 0 18.15 54.46 73.74 77.25 64.77 43.04 62.71 83.87 22.77 83.57 20.22 72.02 38.15 26.84 73.68 18.46 0.00 0.00 3.76 15.15 0.00 14.51 7.85 74 ER14e ExonRegion 0 17.38 37.33 48.76 37.97 47.74 22.48 32.76 32.49 20.63 36.11 11.41 66.38 48.54 15.52 37.57 6.16 7.02 1.98 13.45 17.37 0.00 14.34 0.51 75 ER14f ExonRegion 0 0.00 0.00 1.23 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 4.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00