Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PCDH17 Gene 0 17.30 87.91 29.94 16.68 71.20 19.33 46.55 189.84 51.13 35.19 0.35 0.00 0.14 0.63 0.00 0.00 0.72 93.95 50.73 158.60 2.58 2.86 2.32 2 448267 Transcript 0 3.76 14.46 8.65 3.32 19.28 8.65 13.90 33.08 14.48 12.10 0.00 0.00 0.00 0.00 0.00 0.00 1.46 79.58 68.12 121.71 1.44 2.72 2.88 3 484979 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 377918 Transcript 0 25.14 106.46 27.21 20.06 74.33 23.75 60.29 235.63 59.65 37.82 0.12 0.00 0.08 0.28 0.00 0.00 0.22 84.15 71.51 172.77 0.54 4.18 6.96 5 IG21_AR7 ActiveIntergenicRegion 0 1.86 13.52 10.14 1.89 15.94 6.53 19.32 33.86 16.98 11.81 0.30 0.00 0.00 0.81 0.00 0.00 1.19 53.84 58.74 98.90 1.02 1.61 1.36 6 IG21_SR6 SilentIntergenicRegion 0 2.33 9.60 7.51 3.06 12.59 2.79 23.42 28.87 15.43 10.34 0.00 0.00 0.00 1.19 0.00 0.00 0.00 43.69 39.25 98.12 0.60 0.57 0.24 7 IG21_AR8 ActiveIntergenicRegion 0 1.00 11.89 9.36 2.73 11.41 3.61 21.06 45.31 21.41 11.61 0.00 0.00 0.00 0.68 0.00 0.00 0.52 85.48 52.11 123.63 3.13 0.99 1.25 8 ER1a ExonRegion 0 3.76 14.46 8.65 3.32 19.28 8.65 13.90 33.08 14.48 12.10 0.00 0.00 0.00 0.00 0.00 0.00 1.46 79.58 68.12 121.71 1.44 2.72 2.88 9 E1_Ab KnownBoundary 0 2.96 14.93 8.66 0.00 11.12 2.67 9.94 31.38 19.36 9.19 0.00 0.00 0.00 0.00 0.00 0.00 4.49 70.39 28.42 104.82 0.00 0.00 0.00 10 ER1b ExonRegion 0 2.52 17.94 15.42 3.36 11.35 8.00 15.72 61.00 33.45 19.04 0.00 0.00 0.00 0.53 0.00 0.00 1.34 130.05 56.76 138.83 2.85 3.12 1.69 11 E1_Ac KnownBoundary 0 13.63 19.80 12.60 0.00 4.24 9.99 16.56 63.87 28.01 16.95 0.00 0.00 0.00 2.41 0.00 0.00 0.00 164.61 43.77 126.68 0.00 2.45 0.00 12 ER1c ExonRegion 0 1.32 8.58 12.98 3.95 6.77 6.56 10.75 69.65 32.69 19.67 0.49 0.00 0.13 0.66 0.00 0.00 0.84 151.20 37.23 154.24 4.21 1.77 1.47 13 E1a_E2a KnownJunction 0 9.26 37.82 24.25 5.19 32.60 9.54 23.19 134.39 35.21 25.44 1.95 0.00 6.01 2.47 0.00 0.00 0.00 155.74 56.19 152.63 5.19 0.00 4.27 14 E1a_E3b NovelJunction 0 7.26 9.41 4.49 0.00 12.14 4.83 0.00 6.78 4.51 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.48 0.00 6.33 0.00 0.00 0.00 15 I1_AR14 ActiveIntronRegion 0 7.40 14.15 19.53 10.12 9.70 0.81 15.30 47.50 15.03 1.54 0.00 0.00 0.50 0.00 0.00 0.00 0.00 4.74 5.68 23.33 0.00 0.00 0.38 16 I1_SR3 SilentIntronRegion 0 6.12 16.05 33.71 10.53 13.88 1.59 14.35 51.76 14.29 0.43 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.60 4.48 31.57 0.00 0.00 0.00 17 I1_AR15 ActiveIntronRegion 0 4.83 8.76 21.37 6.11 11.05 0.82 10.31 36.89 10.54 1.25 0.00 0.00 0.00 0.37 0.00 0.00 0.00 1.37 2.74 19.75 0.00 0.00 0.00 18 I1_AR16 ActiveIntronRegion 0 2.25 3.84 25.52 3.85 6.16 0.15 6.82 18.73 2.66 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 2.41 14.84 0.00 0.00 0.25 19 ER2a ExonRegion 0 7.17 26.57 14.62 8.48 21.09 16.04 27.13 127.26 39.84 26.77 0.20 0.00 0.95 0.30 0.00 0.00 0.00 139.21 48.54 150.49 3.77 1.73 6.67 20 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E2a_E3b KnownJunction 0 20.52 44.73 6.39 10.75 17.66 16.30 43.06 157.23 51.07 27.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 132.24 92.14 191.11 0.00 4.78 11.78 22 ER3a ExonRegion 0 1.41 4.75 1.23 0.91 2.38 1.43 4.12 15.56 5.76 3.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.81 8.14 22.22 0.00 0.46 1.31 23 ER3b ExonRegion 0 9.44 50.73 9.17 7.81 26.11 16.41 37.75 132.90 43.56 29.70 0.00 0.00 0.00 1.67 0.00 0.00 0.00 138.48 74.81 179.64 0.00 2.53 14.45 24 E3_Da KnownBoundary 0 0.00 61.50 16.68 5.76 38.29 25.78 44.38 135.83 47.05 38.01 0.00 0.00 0.00 4.89 0.00 0.00 0.00 158.85 57.70 211.76 0.00 2.27 14.43 25 ER3c ExonRegion 0 7.13 38.41 17.17 8.61 37.12 14.11 36.96 152.09 53.05 42.77 0.00 0.00 1.46 0.99 0.00 0.00 0.00 176.22 71.73 189.23 5.62 2.44 5.50 26 E3b_E4a KnownJunction 0 3.04 49.99 16.47 13.45 58.15 23.57 60.46 141.79 53.88 44.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 159.89 78.59 214.38 5.56 0.00 7.60 27 ER4a ExonRegion 0 27.53 64.85 22.99 15.61 74.49 18.72 53.71 162.56 54.31 41.81 0.83 0.00 0.00 0.96 0.00 0.00 1.06 126.14 76.18 204.41 3.70 2.94 4.49 28 E4_Da KnownBoundary 0 20.67 25.72 11.21 8.66 146.94 2.73 68.63 33.23 11.57 2.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.45 34.35 107.00 0.00 2.88 3.59 29 ER4b ExonRegion 0 29.76 168.19 48.04 29.36 131.00 31.20 77.51 314.03 68.24 48.25 0.24 0.00 0.16 0.57 0.00 0.00 0.45 36.07 50.87 154.43 1.08 3.59 2.15