Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DHRS12 Gene 0 18.04 14.53 23.07 17.87 21.33 30.06 12.61 27.28 26.37 22.33 10.49 11.09 7.01 12.90 13.36 11.31 10.80 17.35 17.79 19.55 10.58 6.87 6.20 2 490949 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 218981 Transcript 0 17.08 12.10 23.76 18.12 13.88 27.17 9.46 20.86 20.27 20.35 4.20 2.15 2.93 6.11 7.93 7.62 8.24 23.16 12.75 16.03 6.45 5.43 4.64 4 444610 Transcript 0 10.86 9.04 22.50 22.52 21.33 12.36 8.52 42.53 18.88 13.80 5.76 6.00 0.00 19.42 13.21 4.23 3.85 8.17 15.91 10.61 2.93 6.00 4.18 5 280056 Transcript 0 5.80 5.58 5.02 4.29 6.92 8.99 4.23 6.34 7.20 6.82 3.11 2.70 1.78 2.77 2.64 2.34 2.69 5.55 4.22 5.64 5.81 1.94 1.78 6 497151 Transcript 0 0.00 0.00 1.57 0.00 3.03 2.18 1.12 2.63 2.10 1.47 0.54 1.00 0.00 0.16 0.41 0.00 0.47 4.47 0.45 1.80 0.00 0.29 0.00 7 489680 Transcript 0 4.71 2.76 4.03 4.66 3.69 2.07 0.69 2.87 1.00 3.69 2.46 5.26 0.00 4.24 4.25 7.32 3.49 3.88 3.49 7.27 3.30 2.08 0.70 8 461948 Transcript 0 4.90 5.79 6.42 11.55 5.60 7.44 6.31 8.65 9.30 5.58 2.39 4.48 8.39 2.32 1.40 1.98 4.96 13.01 7.79 8.20 5.67 0.59 12.56 9 472372 Transcript 0 11.42 6.92 6.90 5.16 11.53 18.01 4.61 9.35 9.15 10.49 3.88 12.41 1.45 3.78 3.17 3.94 3.45 7.91 6.83 5.46 3.00 5.22 4.22 10 469957 Transcript 0 5.20 4.10 4.27 10.06 5.48 8.53 6.63 5.74 16.42 7.65 2.07 9.47 3.27 2.14 3.33 3.46 4.57 3.99 6.72 8.44 1.33 4.50 0.68 11 ER1a ExonRegion 0 25.64 15.16 3.54 2.41 18.27 37.10 13.47 2.91 9.28 1.08 16.40 0.00 0.00 7.19 9.20 11.89 17.45 6.18 13.92 17.75 20.27 3.10 12.67 12 E1_Ab KnownBoundary 0 66.75 35.26 17.30 6.19 51.36 103.46 33.92 9.00 14.87 10.72 35.11 0.00 0.00 14.36 19.53 42.98 40.49 17.41 31.34 53.82 30.77 8.51 24.41 13 E1_Ac KnownBoundary 0 36.52 38.22 4.76 9.22 37.18 88.93 32.28 14.09 36.57 19.66 17.64 0.00 6.01 26.90 15.20 19.40 18.51 49.25 8.85 27.36 8.59 0.00 8.19 14 ER1b ExonRegion 0 34.29 30.10 5.20 7.36 35.00 75.99 26.90 9.54 26.53 9.22 24.35 0.00 0.00 16.50 17.64 21.76 27.99 27.57 18.73 36.26 22.21 3.67 15.15 15 ER1c ExonRegion 0 20.88 47.47 6.32 9.11 27.00 57.26 14.29 11.63 28.24 22.76 7.20 1.67 0.32 11.74 8.44 9.19 8.48 23.10 4.13 16.68 6.21 0.28 5.07 16 E1_Da NovelBoundary 0 0.00 0.00 3.31 0.00 0.00 0.00 0.00 0.00 6.19 4.30 0.00 0.00 0.00 6.53 0.00 3.76 3.74 10.65 13.46 8.95 6.30 6.25 0.00 17 E1a_E3a KnownJunction 0 9.78 41.64 9.91 6.86 11.46 22.88 4.42 8.67 12.09 27.69 2.21 6.30 0.00 2.47 4.45 0.00 0.00 6.51 0.00 2.49 5.50 0.00 0.00 18 ER2a ExonRegion 0 0.00 0.00 1.34 0.00 1.82 1.97 2.24 1.12 3.02 1.62 1.09 2.01 0.00 0.32 0.82 0.00 0.93 4.04 0.90 3.61 0.00 0.59 0.00 19 E2_Da NovelBoundary 0 0.00 0.00 1.21 0.00 0.00 0.00 2.25 0.00 3.15 0.00 7.58 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E2a_E3a KnownJunction 0 0.00 0.00 1.80 0.00 4.24 2.38 0.00 4.15 1.19 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.89 0.00 0.00 0.00 0.00 0.00 21 ER3a ExonRegion 0 10.99 14.93 20.77 17.80 26.06 22.81 12.59 39.74 37.74 30.55 25.79 11.53 4.83 20.03 17.60 21.71 21.70 10.89 28.29 36.46 23.78 9.03 10.80 22 E3a_E4a KnownJunction 0 6.30 9.27 5.82 1.73 8.66 2.38 2.21 24.81 30.29 9.40 11.95 0.00 12.01 19.01 31.89 27.09 12.16 26.94 0.00 17.96 3.15 3.12 15.71 23 E3a_E5a KnownJunction 0 3.63 6.71 36.49 24.31 36.08 31.06 1.94 39.39 18.46 40.19 5.32 30.31 13.31 19.48 9.64 36.57 4.77 21.80 26.45 35.73 16.19 8.51 28.08 24 ER4a ExonRegion 0 7.65 11.00 11.62 6.65 6.93 10.43 7.21 29.72 39.75 7.48 10.08 13.25 21.13 17.42 25.87 15.22 9.15 11.58 5.83 16.74 5.73 5.77 5.98 25 E4a_E5a KnownJunction 0 0.00 5.99 17.71 14.88 12.14 13.17 20.84 32.08 40.22 7.01 24.43 16.96 12.82 20.60 23.98 8.46 9.35 5.93 3.48 14.32 9.33 5.94 0.00 26 ER5a ExonRegion 0 21.60 18.72 51.82 40.83 74.26 75.50 34.72 83.02 71.32 47.11 38.87 35.94 30.81 48.41 28.83 36.50 28.82 22.37 40.42 42.21 27.04 12.68 19.17 27 E5_Da NovelBoundary 0 20.60 2.50 2.96 7.72 16.98 14.08 5.87 7.27 6.48 8.19 0.00 18.01 0.00 0.00 0.00 0.00 4.39 5.14 4.61 5.43 0.00 2.45 6.57 28 E5a_E6a KnownJunction 0 45.12 28.28 64.28 39.89 86.76 138.56 46.55 80.83 73.03 47.22 35.38 12.30 73.05 55.74 38.45 43.41 13.09 23.17 25.51 41.42 22.73 30.98 25.52 29 E6_Ac NovelBoundary 0 45.56 25.00 44.23 25.07 60.44 87.28 29.77 51.92 45.49 52.27 31.32 37.81 27.60 24.43 34.86 24.10 17.02 21.60 48.19 33.11 29.96 15.31 12.04 30 ER6a ExonRegion 0 36.73 24.52 53.63 33.35 72.56 121.03 44.24 72.09 69.75 47.50 39.45 22.41 77.80 61.14 36.69 49.48 11.65 28.91 38.97 43.43 26.44 30.52 23.32 31 ER6b ExonRegion 0 40.67 24.11 59.17 31.25 75.49 127.32 41.52 70.87 64.93 47.92 41.83 41.13 62.65 55.22 35.64 43.10 17.92 27.58 53.24 42.40 26.60 28.72 19.30 32 ER6c ExonRegion 0 43.36 30.92 52.31 24.92 43.77 75.42 33.03 62.49 52.86 48.64 45.40 68.05 31.51 40.23 32.51 35.59 28.35 19.05 40.84 36.55 22.32 20.46 8.81 33 E6_Da NovelBoundary 0 28.15 18.35 29.98 15.02 10.02 31.29 28.93 26.53 26.39 16.20 31.96 23.56 6.98 22.72 31.52 21.36 23.38 6.59 11.29 20.01 5.31 15.00 3.41 34 E6b_E8a KnownJunction 0 44.75 57.69 51.74 24.71 39.98 46.90 17.71 65.14 42.27 42.47 37.96 46.52 5.84 36.61 38.20 43.41 16.08 22.09 28.14 14.19 26.32 13.29 15.02 35 ER6d ExonRegion 0 31.75 43.72 44.93 22.71 33.00 37.90 20.52 58.48 42.61 43.58 37.53 51.23 9.38 36.95 39.41 36.41 28.33 18.79 19.11 22.69 22.59 15.11 11.99 36 I6 Intron 0 4.77 6.49 3.79 5.81 12.90 13.48 10.43 8.24 17.28 10.38 4.97 15.35 11.31 9.84 3.49 7.56 7.31 13.12 12.47 17.34 5.62 4.88 6.06 37 I6_SR1 SilentIntronRegion 0 2.62 3.66 2.27 3.17 7.32 9.00 8.32 4.93 12.45 7.39 4.40 14.19 9.03 9.76 3.55 6.33 7.72 11.68 11.19 15.61 4.77 3.65 5.72 38 I6_AR1 ActiveIntronRegion 0 11.97 15.85 6.31 13.98 24.90 27.02 20.52 11.03 37.04 16.55 6.23 28.00 27.46 11.24 3.07 13.61 5.45 9.68 18.33 22.31 8.17 7.26 7.46 39 I6_SR2 SilentIntronRegion 0 9.13 19.16 4.79 10.09 41.59 36.38 24.60 16.25 27.55 14.88 4.44 33.46 30.87 11.14 3.22 13.45 9.11 15.34 21.79 26.86 6.70 8.53 11.70 40 I6_AR2 ActiveIntronRegion 0 6.74 7.23 5.83 11.57 13.87 14.60 7.23 10.19 20.24 17.29 7.62 12.07 6.85 10.86 3.80 12.84 7.10 20.88 11.14 22.28 7.62 7.71 4.94 41 I6_SR3 SilentIntronRegion 0 12.07 10.71 11.36 13.40 23.80 21.37 15.11 19.72 33.05 16.15 8.67 7.80 7.92 9.73 2.95 11.26 9.64 18.62 18.73 25.62 10.61 7.28 5.96 42 I6_AR3 ActiveIntronRegion 0 8.08 8.59 7.43 9.99 16.51 17.75 8.97 15.00 25.70 19.31 5.34 10.76 10.16 8.72 3.92 4.42 4.35 16.55 11.69 13.79 6.31 4.94 4.42 43 I6_SR4 SilentIntronRegion 0 4.86 7.25 4.28 5.89 13.17 6.98 6.89 13.52 13.00 9.66 4.94 7.76 4.81 7.91 2.98 3.43 1.78 12.39 3.37 10.77 3.89 8.62 3.83 44 E7_Aa NovelBoundary 0 20.45 31.90 20.73 19.41 24.19 38.61 22.30 19.84 35.97 16.01 0.00 25.21 13.80 7.06 14.09 4.36 9.26 2.11 8.28 17.19 10.87 2.39 7.00 45 ER7a ExonRegion 0 19.86 17.52 12.05 10.98 23.70 35.22 14.75 16.93 21.01 18.00 8.05 28.99 5.79 8.39 4.05 9.27 8.31 11.26 14.59 14.80 3.69 2.93 4.25 46 E7_Da NovelBoundary 0 10.45 16.58 15.20 11.89 12.05 13.06 1.81 14.38 35.62 9.48 2.63 12.60 0.00 21.78 8.90 4.36 13.56 29.93 8.09 16.94 11.18 0.00 0.00 47 E7a_E8a KnownJunction 0 16.45 2.96 7.63 8.59 7.81 5.62 0.00 7.52 4.48 9.83 7.48 0.00 0.00 3.00 0.00 4.19 3.65 9.99 0.00 3.00 2.97 0.00 0.00 48 I7 Intron 0 5.35 2.57 9.24 3.42 10.15 10.05 2.79 5.43 6.21 6.48 0.81 7.51 0.00 3.87 2.95 7.52 2.78 8.90 14.77 8.07 3.70 1.76 2.48 49 I7_AR1 ActiveIntronRegion 0 5.44 2.61 9.39 3.47 10.32 10.22 2.84 5.52 6.30 6.59 0.83 7.64 0.00 3.93 3.00 7.62 2.83 9.02 15.02 8.17 3.76 1.79 2.52 50 E8_Aa NovelBoundary 0 13.11 24.21 16.17 11.02 16.98 17.15 6.01 26.45 27.20 13.65 5.00 0.00 6.17 13.83 0.00 15.04 8.32 39.96 12.71 34.71 9.02 8.57 7.85 51 ER8a ExonRegion 0 49.94 52.71 57.04 31.52 42.29 58.92 17.08 56.54 48.23 43.86 37.44 46.23 29.43 34.94 43.94 24.69 32.00 30.91 29.95 33.32 28.79 13.27 16.29 52 E8_Da NovelBoundary 0 2.96 9.01 4.76 4.13 7.89 18.11 5.56 4.15 17.53 5.35 2.26 17.71 0.00 15.07 10.38 4.19 8.13 16.79 17.32 2.49 12.48 5.63 0.00 53 E8a_E9a KnownJunction 0 3.33 0.00 4.58 3.46 0.00 0.00 0.00 4.23 0.00 2.98 2.05 0.00 0.00 4.94 0.00 3.85 0.00 5.97 0.00 6.14 0.00 0.00 0.00 54 E8a_E10b KnownJunction 0 46.82 39.86 51.18 31.83 57.72 42.13 22.04 43.83 51.42 48.22 37.27 6.30 34.41 38.44 30.41 11.45 7.57 24.71 31.72 26.33 17.30 11.82 15.28 55 E9_Aa NovelBoundary 0 7.11 6.51 10.91 12.15 12.31 18.06 0.00 8.13 17.30 13.57 5.00 6.15 7.63 9.83 4.45 12.05 0.00 8.54 26.26 24.74 14.27 0.00 4.35 56 ER9a ExonRegion 0 3.90 2.09 4.51 4.86 6.75 3.32 2.07 1.93 1.58 3.87 3.00 9.91 0.00 5.30 6.56 10.34 5.79 5.68 5.68 12.49 9.90 0.97 2.09 57 E9_Da NovelBoundary 0 6.30 0.00 16.68 13.92 3.23 13.40 12.67 3.24 12.01 8.22 0.00 12.60 0.00 4.94 0.00 7.69 8.51 21.60 17.88 8.50 7.97 2.88 3.50 58 E9a_E10b KnownJunction 0 6.89 6.18 2.99 5.66 4.33 2.90 0.00 2.46 1.42 4.22 2.32 5.85 0.00 2.47 6.18 7.78 4.68 0.00 4.80 3.20 0.00 5.27 0.00 59 E10_Aa NovelBoundary 0 14.00 15.19 16.85 25.57 16.38 44.07 28.26 28.79 53.18 26.73 4.84 18.46 34.09 9.65 8.90 13.67 3.65 13.89 18.45 20.90 5.93 10.96 16.22 60 ER10a ExonRegion 0 10.40 8.20 8.54 20.13 10.97 17.07 13.25 9.06 32.83 15.30 4.14 18.94 6.55 4.28 6.66 6.92 9.14 5.95 13.44 16.88 2.66 9.00 1.36 61 E10_Ab KnownBoundary 0 6.22 17.76 13.57 40.52 27.59 36.17 14.71 23.17 49.31 23.91 9.48 18.91 6.01 2.47 0.00 12.56 13.84 7.83 18.82 16.23 2.29 7.78 4.01 62 ER10b ExonRegion 0 59.18 45.46 72.20 59.70 81.89 96.98 38.64 76.40 75.32 79.16 40.94 47.37 32.24 45.62 40.98 38.21 31.45 41.91 64.78 53.95 35.70 23.10 21.21 63 E10_Da NovelBoundary 0 2.96 0.00 3.02 1.23 3.14 9.03 5.39 5.38 14.44 3.17 0.00 18.91 0.00 0.00 4.45 3.25 0.00 4.23 7.53 8.31 3.09 4.96 11.78 64 E10a_E11a KnownJunction 0 3.48 0.00 3.96 11.65 0.00 5.79 3.84 6.61 5.15 4.16 2.68 0.00 13.64 2.24 0.00 0.00 3.55 14.18 4.24 6.26 3.15 0.00 19.38 65 E10a_E12a KnownJunction 1 57.20 18.62 85.36 23.94 43.55 77.46 30.65 65.96 49.71 56.62 29.11 30.01 6.01 22.90 59.83 32.04 15.80 27.36 40.94 39.18 24.83 13.41 3.59 66 E10a_E14a NovelJunction 0 3.78 0.00 8.81 4.13 11.12 5.62 1.90 3.53 9.14 4.49 0.00 6.30 6.82 4.94 8.90 8.12 4.30 4.64 16.57 0.00 3.15 2.45 0.00 67 E10_Db NovelBoundary 0 7.56 0.00 3.49 3.03 3.23 5.00 0.00 2.55 13.37 0.00 5.11 19.06 5.84 0.00 0.00 0.00 13.84 6.26 0.00 6.01 0.00 0.00 0.00 68 E10b_E12a KnownJunction 0 3.26 3.35 3.43 0.00 8.06 16.52 0.00 6.98 4.77 6.37 0.00 12.00 0.00 2.12 4.45 0.00 0.00 6.72 0.00 0.00 3.15 8.45 6.74 69 ER10c ExonRegion 0 6.11 3.84 4.49 1.06 6.54 14.67 3.68 5.95 6.31 7.77 0.00 8.66 0.00 1.62 4.19 2.31 1.83 3.70 12.74 4.02 2.20 9.49 5.87 70 E11_Aa NovelBoundary 0 10.45 0.00 0.00 9.16 21.48 0.00 14.79 10.10 17.68 5.78 0.00 6.30 13.15 7.12 0.00 0.00 0.00 4.52 0.00 9.14 0.00 5.69 0.00 71 ER11a ExonRegion 0 6.32 11.58 8.87 11.44 11.20 9.09 8.77 10.68 13.46 7.00 2.09 8.97 3.15 2.41 2.80 3.96 6.37 11.84 11.35 10.13 8.18 1.19 5.74 72 E11_Da NovelBoundary 0 6.74 14.80 8.69 9.36 15.70 35.04 16.52 19.59 16.06 7.39 5.05 0.00 20.45 0.00 5.44 12.13 13.46 6.63 35.39 8.44 5.44 4.96 0.00 73 I11_AR1 ActiveIntronRegion 0 5.72 12.27 6.95 11.78 13.40 9.86 8.84 11.46 18.62 14.74 2.80 6.38 2.35 5.34 4.05 0.00 2.72 10.70 13.75 5.95 4.93 2.63 5.05 74 ER12a ExonRegion 0 51.24 22.21 58.04 33.68 46.16 72.65 23.76 67.75 52.84 47.97 21.52 23.07 3.50 28.47 41.67 26.00 16.69 37.42 44.84 36.24 22.21 13.00 14.65 75 E12_Da NovelBoundary 0 0.00 12.70 7.84 12.29 0.00 2.21 13.51 5.71 7.52 8.38 4.79 0.00 0.00 2.41 0.00 12.13 0.00 15.05 0.00 8.82 0.00 5.76 8.71 76 E12a_E13a KnownJunction 0 3.78 3.35 0.00 0.00 3.74 0.00 0.00 2.34 1.79 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.19 0.00 0.00 77 E12a_E14a KnownJunction 0 34.45 20.98 30.75 32.43 50.76 62.98 39.88 63.17 47.51 21.44 15.58 17.71 0.00 14.36 27.44 13.24 8.32 30.51 27.39 28.51 21.93 2.57 10.93 78 E13_Aa NovelBoundary 0 6.59 6.18 9.96 12.59 11.21 0.00 12.06 18.28 9.95 16.31 2.68 0.00 0.00 2.47 0.00 0.00 12.72 11.61 9.60 15.28 8.96 3.12 4.18 79 ER13a ExonRegion 0 7.81 7.80 10.05 8.58 10.11 17.99 8.45 10.33 12.60 11.97 6.22 5.40 3.56 5.55 5.29 4.68 5.38 11.10 8.44 11.27 6.44 3.88 3.56 80 ER14a ExonRegion 0 21.63 20.47 34.27 28.20 25.98 31.59 15.56 62.51 36.50 32.48 10.25 8.28 5.61 27.40 30.13 10.47 10.38 24.70 28.85 25.95 16.27 12.70 6.75 81 E14_Da KnownBoundary 0 16.30 9.67 15.37 12.75 24.45 22.83 11.84 15.40 7.73 14.08 2.05 0.00 0.00 7.06 4.45 0.00 8.32 30.47 0.00 5.69 5.81 3.12 0.00 82 E14a_E14b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 0.00 0.00 0.00 0.00 83 E14a_E14c KnownJunction 0 20.67 18.09 44.38 45.05 39.98 22.88 17.05 85.06 37.15 26.46 11.53 12.00 0.00 38.85 24.97 8.46 4.39 16.33 31.81 21.22 5.87 12.00 8.37 84 ER14b ExonRegion 0 14.03 12.30 20.86 17.18 14.17 25.09 11.34 22.51 21.00 16.93 3.73 1.98 3.13 6.14 6.71 6.99 8.12 19.47 14.52 14.81 6.79 6.38 4.91 85 E14_Ab KnownBoundary 0 38.53 11.77 32.46 25.11 15.37 49.80 22.74 19.35 29.28 19.72 4.26 6.30 8.12 4.65 8.90 8.37 3.46 39.01 17.69 9.01 3.09 5.27 0.00 86 ER14c ExonRegion 0 26.98 15.56 26.23 15.78 16.55 27.83 14.30 28.11 24.41 19.37 5.04 2.89 4.20 5.63 12.83 7.93 6.78 20.81 22.88 12.78 6.13 7.48 4.51 87 E14_Db KnownBoundary 0 13.78 26.97 26.79 14.98 23.09 49.74 20.80 41.07 27.46 28.47 2.42 12.60 0.00 14.30 13.85 3.85 13.84 27.48 21.74 5.37 3.15 5.45 7.51 88 ER14d ExonRegion 0 20.14 11.90 26.66 19.05 13.60 29.25 7.59 19.21 19.54 23.78 4.68 2.32 2.73 6.07 9.15 8.25 8.35 26.85 10.97 17.25 6.11 4.49 4.36 89 E14_Ac KnownBoundary 0 6.96 10.98 28.30 32.90 36.67 15.28 9.36 18.48 17.94 30.19 4.90 6.15 0.00 7.77 23.24 7.95 12.81 27.36 4.80 26.53 2.66 9.06 4.01 90 ER14e ExonRegion 0 32.61 16.63 45.92 33.55 34.96 38.72 12.52 51.26 43.73 42.07 11.88 8.89 7.11 22.41 24.57 15.83 16.23 20.53 27.72 32.08 13.55 11.65 4.87 91 ER14f ExonRegion 0 1.06 0.00 0.61 0.00 2.68 1.83 0.00 0.00 0.62 1.15 0.00 0.00 0.00 0.00 1.45 0.00 3.30 0.00 0.00 0.00 0.00 0.00 0.00 92 IG38_SR2 SilentIntergenicRegion 0 2.50 18.50 4.90 5.82 1.81 0.00 2.98 7.84 6.26 4.38 0.00 0.00 2.27 0.00 1.72 1.12 0.00 1.95 4.35 5.10 1.47 1.08 0.00