Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CAB39L Gene 0 17.65 31.67 12.11 27.98 16.89 63.31 10.02 9.49 32.51 5.27 7.95 46.57 10.28 23.52 11.52 55.69 14.01 11.17 7.67 9.33 23.50 42.24 18.66 2 409308 Transcript 0 0.58 50.92 4.97 11.65 20.64 33.51 8.76 7.09 17.17 3.83 2.37 34.14 16.88 4.80 8.13 12.48 5.63 0.83 3.46 11.24 9.89 23.24 16.55 3 347776 Transcript 0 0.47 12.97 1.13 3.94 4.77 7.34 2.50 1.15 5.84 0.76 0.64 9.14 3.13 2.89 2.26 5.61 3.39 0.97 0.35 2.38 1.88 6.96 2.94 4 470410 Transcript 0 0.00 0.35 0.16 0.38 0.46 0.00 0.35 0.00 0.00 0.00 0.00 0.31 1.41 0.12 0.00 0.52 0.00 0.00 0.00 0.00 0.19 0.02 0.00 5 410043 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.76 0.00 6 413278 Transcript 0 0.00 0.00 0.00 0.17 0.00 0.64 0.23 0.00 0.81 0.15 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.16 0.00 0.18 0.00 1.18 0.25 7 409082 Transcript 0 0.00 0.00 0.00 0.00 0.00 2.90 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 8 476943 Transcript 0 0.12 0.24 0.00 0.24 0.00 0.00 0.15 0.00 0.57 0.00 0.00 0.50 0.00 0.00 0.00 1.11 0.19 0.00 0.00 0.00 0.00 0.00 0.00 9 378341 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 355854 Transcript 0 0.00 4.75 0.00 3.18 7.14 1.83 2.65 0.00 4.94 0.00 0.00 0.00 0.00 2.17 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 457041 Transcript 0 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 12 425242 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 409130 Transcript 0 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.70 14 ER1a ExonRegion 0 1.16 1.26 0.00 0.00 1.21 13.58 0.57 0.00 1.50 0.00 0.00 0.00 0.00 0.31 2.90 4.03 2.28 0.00 2.12 1.57 7.61 1.79 5.52 15 E1_Ab KnownBoundary 0 3.78 5.92 0.00 1.50 4.16 37.42 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 5.07 7.52 4.77 0.00 4.61 2.81 5.07 3.06 7.94 16 E1_Ac KnownBoundary 0 0.00 3.22 0.00 0.00 0.00 10.96 6.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.20 0.00 2.16 0.00 0.00 12.36 3.12 4.01 17 E1_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 3.99 8.35 0.00 0.00 3.59 0.00 2.68 0.00 0.00 0.00 0.00 4.36 0.00 2.57 0.00 0.00 2.90 0.00 0.00 18 ER1b ExonRegion 0 2.12 4.07 0.00 0.00 3.44 27.94 2.65 0.00 3.71 0.00 1.75 0.00 0.00 1.62 1.24 10.33 4.56 1.14 3.19 2.43 10.07 4.46 7.27 19 ER1c ExonRegion 0 1.35 3.88 0.00 0.00 7.05 24.67 2.65 0.00 3.82 0.00 1.93 0.00 0.00 1.77 0.00 9.46 6.90 1.85 0.58 4.26 12.42 5.11 4.81 20 ER1d ExonRegion 0 14.66 35.72 1.55 3.66 12.38 98.75 22.96 1.50 12.76 2.40 8.45 0.00 0.00 13.14 4.33 19.96 16.80 10.51 5.90 8.22 43.81 37.53 40.81 21 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 ER2a ExonRegion 0 5.98 50.40 5.54 11.96 5.88 23.92 8.50 4.18 25.64 5.06 6.84 6.96 4.08 3.78 7.48 6.85 7.92 9.45 4.80 9.00 28.54 22.53 15.75 23 E2_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER2b ExonRegion 0 0.00 3.00 0.13 2.28 0.04 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 1.05 0.00 1.47 1.22 0.06 0.00 26 E2b_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER3a ExonRegion 0 7.46 114.87 12.51 25.72 14.89 31.17 16.58 8.53 32.44 10.10 7.43 42.27 7.53 9.57 8.67 21.67 4.00 11.86 12.66 14.70 19.89 73.91 58.23 28 E3_Da NovelBoundary 0 0.00 0.00 0.00 17.85 0.00 0.00 6.54 0.00 0.00 1.58 0.00 23.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 4.01 29 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E3a_E8d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.76 0.00 31 E3a_E10b KnownJunction 0 0.00 100.57 9.93 23.31 40.07 53.44 16.96 14.17 32.84 7.66 4.74 68.27 33.76 9.30 13.35 20.93 8.98 1.66 4.80 20.90 12.17 44.70 27.57 32 I3_AR1 ActiveIntronRegion 0 3.69 17.83 4.36 10.18 5.53 4.65 4.76 2.75 0.87 2.21 1.22 6.16 0.00 1.06 1.73 0.94 2.00 0.29 0.81 3.71 0.00 12.26 0.47 33 ER4a ExonRegion 0 0.00 0.00 0.00 0.69 0.00 1.25 0.90 0.00 0.63 0.58 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.63 0.00 0.72 0.00 0.71 1.00 34 E4a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 ER5a ExonRegion 0 0.00 1.06 0.48 1.13 1.39 0.00 1.04 0.00 0.00 0.00 0.00 0.93 4.24 0.35 0.00 1.55 0.00 0.00 0.00 0.00 0.57 0.06 0.00 36 E5a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER7a ExonRegion 0 0.00 2.41 0.00 0.80 0.00 2.62 1.58 0.00 0.00 0.00 0.00 1.41 0.07 0.45 0.00 0.00 2.61 0.76 0.00 0.00 1.74 0.82 0.00 39 E7a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 E7a_E10b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 8.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 ER8a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 42 ER8b ExonRegion 0 2.90 1.67 0.57 2.33 0.00 2.69 1.54 1.76 0.00 0.55 0.00 1.40 0.00 3.48 0.00 1.63 1.81 1.85 0.00 0.72 0.00 3.23 0.00 43 E8_Ac KnownBoundary 0 3.41 0.00 0.00 3.60 0.00 13.57 8.39 0.00 0.00 1.61 0.00 6.30 0.00 2.12 0.00 3.50 4.58 5.64 0.00 3.26 0.00 9.00 0.00 44 E8_Da KnownBoundary 1 68.68 0.00 3.67 0.00 0.00 0.00 0.00 2.51 1.36 0.00 0.00 0.00 0.00 50.56 8.90 177.90 31.70 0.00 0.00 3.26 0.00 23.88 16.82 45 ER8c ExonRegion 1 33.13 0.00 2.45 2.26 0.00 9.74 5.30 2.03 0.68 1.15 0.00 3.28 0.00 27.44 3.50 95.93 16.73 0.57 0.00 4.26 0.00 15.66 6.38 46 ER8d ExonRegion 0 26.74 0.52 3.51 3.36 3.47 5.01 1.84 2.09 6.47 1.06 0.00 7.50 0.00 14.91 4.17 92.75 11.08 2.40 0.00 2.63 0.00 8.31 3.43 47 E8_Db KnownBoundary 0 6.89 3.35 2.54 3.76 4.33 8.69 3.71 0.00 3.36 0.00 0.00 12.45 0.00 2.47 0.00 28.20 12.72 9.74 0.00 0.00 0.00 0.00 4.35 48 E8b_E8d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 E8b_E10b KnownJunction 0 3.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 0.00 50 ER8e ExonRegion 0 5.91 1.24 1.17 3.76 5.72 2.08 1.86 1.05 7.16 1.04 0.02 17.35 0.00 13.79 4.18 63.13 13.68 3.62 0.00 3.97 1.00 13.52 4.04 51 E8_Ad KnownBoundary 1 6.96 0.00 2.93 1.53 3.57 0.00 4.42 0.00 8.91 2.77 0.00 67.22 0.00 24.55 0.00 119.80 0.00 4.89 0.00 3.26 6.30 19.84 0.00 52 ER8f ExonRegion 0 3.69 0.00 2.37 4.00 0.20 3.56 1.54 0.00 10.06 0.33 1.50 37.10 0.00 10.56 4.66 63.52 8.89 1.27 0.00 1.77 1.54 7.98 1.18 53 E8_Dc NovelBoundary 0 0.00 0.00 0.00 1.56 0.00 0.00 5.17 0.00 0.00 1.05 0.00 0.00 0.00 0.00 10.75 3.76 0.00 0.00 0.00 9.08 0.00 0.00 0.00 54 E8c_E10b KnownJunction 0 7.48 0.00 0.00 3.96 0.00 5.79 0.00 0.00 6.77 0.00 2.37 44.56 0.00 19.84 8.90 42.21 8.23 0.00 0.00 2.62 0.00 5.39 3.76 55 ER9a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 1.31 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 56 E9a_E10b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 57 ER10a ExonRegion 0 1.41 35.93 3.27 9.54 14.27 22.01 7.50 3.46 16.47 2.29 1.93 27.42 9.38 8.66 6.77 16.84 9.90 1.85 1.06 5.67 4.41 20.84 8.81 58 ER10b ExonRegion 0 32.72 83.38 15.88 33.41 28.86 95.33 30.04 15.48 49.27 6.97 15.01 136.58 23.85 39.42 16.34 99.77 25.40 10.85 9.44 14.38 28.45 93.45 27.53 59 E10_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60 E10a_E11a KnownJunction 0 24.45 107.74 18.33 26.77 27.67 51.28 18.90 14.58 44.96 5.83 12.95 100.38 6.33 43.38 30.53 58.28 30.57 10.90 12.05 16.68 51.21 60.80 19.46 61 ER10c ExonRegion 0 0.37 0.71 0.00 0.71 0.00 0.00 0.46 0.00 0.00 0.00 0.00 1.51 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.01 62 ER11a ExonRegion 0 28.55 107.30 14.72 34.26 16.07 41.67 11.72 17.06 45.43 9.84 19.50 122.12 24.05 45.85 18.55 101.34 34.15 17.97 16.37 15.65 59.25 84.68 26.80 63 E11a_E12a KnownJunction 0 30.82 69.86 24.90 25.37 14.94 60.08 16.52 17.95 49.97 11.52 16.64 139.10 13.64 44.62 14.09 156.63 50.68 17.70 26.45 21.48 73.21 84.75 44.47 64 ER11b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 65 ER12a ExonRegion 0 30.93 55.62 17.40 28.61 18.26 67.58 18.12 18.22 43.82 9.19 25.59 114.39 12.56 52.27 19.83 109.94 33.28 18.95 13.33 21.20 45.39 80.19 35.13 66 E12b_E14a KnownJunction 0 44.60 37.62 15.32 45.98 11.21 80.29 26.67 15.85 52.43 7.68 27.27 90.93 19.48 43.15 29.54 114.07 53.30 22.47 18.26 23.27 34.16 59.27 26.63 67 ER12b ExonRegion 0 29.63 40.67 16.42 40.75 13.91 88.94 21.85 16.94 48.05 7.45 24.93 99.14 12.66 38.00 25.24 117.40 40.27 23.28 9.56 24.26 32.61 66.67 33.48 68 ER13a ExonRegion 0 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 1.40 69 E13a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70 ER14a ExonRegion 0 29.06 36.78 14.49 34.64 20.39 115.02 16.84 17.53 58.27 9.46 21.34 97.22 25.12 41.92 21.05 111.41 33.67 14.41 10.89 15.64 22.53 97.31 36.63 71 E14a_E15a KnownJunction 0 42.60 54.07 17.77 37.56 22.07 127.77 17.22 11.42 62.76 15.10 13.95 57.17 41.72 48.50 30.78 123.39 16.27 12.81 4.05 18.73 22.49 85.05 38.16 72 E14a_E16a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73 ER14b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74 ER15a ExonRegion 0 38.27 48.57 15.07 34.82 13.16 124.03 21.85 11.06 49.90 11.01 13.72 127.07 18.53 51.46 17.94 101.89 33.06 14.57 8.60 20.25 25.71 102.93 34.65 75 E15_Da NovelBoundary 0 10.82 3.09 0.00 5.33 8.66 7.27 5.39 5.09 1.42 0.00 0.00 0.00 0.00 2.47 0.00 8.72 0.00 1.70 8.09 2.49 0.00 19.29 0.00 76 E15a_E16a KnownJunction 1 67.35 77.68 10.97 36.13 17.15 130.10 14.04 13.23 46.87 14.77 19.58 112.99 40.74 56.86 5.32 98.69 16.83 23.17 12.71 9.65 28.11 93.50 29.19 77 I15_AR1 ActiveIntronRegion 0 7.06 10.23 4.76 6.84 3.81 2.33 1.81 1.02 4.20 0.47 1.06 4.89 1.06 4.03 0.00 3.15 1.90 1.16 0.00 1.09 5.13 10.61 4.03 78 E16_Aa NovelBoundary 0 16.15 20.52 8.13 23.07 7.89 5.05 12.19 0.00 12.59 0.00 2.26 19.21 0.00 0.00 0.00 4.36 0.00 2.24 4.80 0.00 5.13 18.98 7.09 79 ER16a ExonRegion 0 39.35 69.20 19.09 28.08 17.64 130.23 19.68 15.06 66.45 20.12 24.92 127.46 14.43 47.67 22.42 94.12 25.11 24.52 13.37 11.51 42.61 91.11 27.72 80 E16a_E17a KnownJunction 0 42.82 82.42 27.02 36.03 48.90 168.03 31.36 21.97 91.00 16.06 27.22 99.03 0.00 36.61 27.57 120.57 21.04 17.24 31.62 18.28 41.21 95.83 26.80 81 ER17a ExonRegion 0 32.31 53.61 22.71 52.57 54.69 152.64 21.17 20.26 69.45 13.91 22.87 106.10 31.14 57.69 27.78 143.07 36.47 29.65 18.69 22.06 67.00 91.30 41.13 82 E17a_E18a KnownJunction 0 24.67 66.04 42.43 97.89 37.27 143.72 15.15 31.05 98.06 19.45 29.11 130.69 26.62 99.01 45.86 235.75 52.92 52.56 15.06 33.36 84.45 150.70 110.89 83 ER18a ExonRegion 0 27.12 55.73 22.99 53.10 30.58 134.83 17.74 20.55 55.72 8.44 14.45 95.18 22.23 42.64 19.99 117.49 26.33 17.55 11.55 17.84 58.11 75.20 36.47 84 E18_Da KnownBoundary 1 18.37 39.47 6.56 26.30 38.88 159.06 7.86 10.72 36.02 7.63 10.42 144.05 20.45 49.62 6.30 76.13 22.25 8.42 14.31 12.46 16.56 54.87 28.60 85 E18_Db KnownBoundary 0 14.08 66.96 9.34 44.15 42.02 87.56 14.97 6.86 52.66 1.61 17.37 93.03 19.80 44.44 4.45 48.53 18.89 10.94 9.41 12.91 20.57 78.26 40.72 86 ER18b ExonRegion 1 15.73 49.14 9.72 41.61 40.23 108.38 8.47 10.77 56.24 6.23 16.30 128.73 21.57 43.58 8.22 66.28 23.00 12.44 14.33 12.55 18.95 66.26 41.11 87 ER18c ExonRegion 0 14.49 29.34 11.98 30.90 16.54 76.90 8.93 7.29 39.86 8.06 10.90 49.42 7.56 32.16 12.01 80.35 16.08 26.28 12.73 9.64 46.31 43.29 27.38 88 E18_Dc KnownBoundary 1 23.86 34.66 18.80 30.90 12.05 76.77 15.41 13.76 31.94 8.49 2.42 12.75 12.34 33.49 14.09 115.44 7.85 33.99 17.22 23.39 42.44 34.47 20.32 89 ER18d ExonRegion 0 28.20 33.88 17.47 47.55 16.37 102.95 12.76 15.39 43.89 6.65 9.69 32.45 11.11 39.59 16.13 69.22 13.72 21.97 15.74 15.38 33.16 53.61 26.92 90 E18_Dd KnownBoundary 0 19.11 62.09 10.82 63.83 58.32 100.57 22.70 10.02 45.83 5.32 7.16 30.76 0.00 36.49 14.09 47.77 20.76 11.77 0.00 11.95 7.97 70.11 13.57 91 ER18e ExonRegion 0 24.75 32.97 21.16 47.34 29.76 85.81 11.73 13.64 46.35 5.39 5.52 44.81 12.91 22.56 16.15 42.65 11.55 8.67 8.23 10.18 16.15 46.65 16.51 92 ER18f ExonRegion 0 0.00 4.75 0.00 3.18 7.14 1.83 2.65 0.00 4.94 0.00 0.00 0.00 0.00 2.17 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00