Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AKAP11 Gene 0 57.74 155.72 39.29 68.43 116.68 115.78 102.13 89.62 118.45 100.04 152.90 496.67 286.04 233.23 79.42 166.61 191.97 94.99 60.72 170.04 103.39 214.38 137.24 2 25301 Transcript 0 19.96 56.29 13.70 26.66 49.97 73.71 68.54 40.43 89.97 63.98 136.71 365.54 220.52 202.04 45.04 136.14 184.60 115.63 63.56 176.69 114.13 143.86 120.73 3 IG36_AR2 ActiveIntergenicRegion 0 1.61 2.03 2.07 2.11 1.75 1.83 10.59 0.95 4.34 0.24 2.47 8.21 0.00 1.06 0.00 0.00 0.00 3.82 13.62 6.02 0.00 0.93 0.00 4 IG36_AR3 ActiveIntergenicRegion 0 0.90 3.46 2.09 1.24 2.99 2.73 2.17 1.87 2.73 1.88 0.47 1.46 0.36 1.74 0.71 2.49 1.23 23.83 12.24 9.42 10.46 3.94 9.29 5 ER1a ExonRegion 1 5.68 2.78 0.71 0.00 6.27 20.12 6.50 2.14 4.40 3.05 30.37 4.90 3.02 88.51 7.10 42.98 81.13 10.14 0.50 17.83 17.63 22.53 23.88 6 E1a_E2a KnownJunction 0 0.00 6.64 3.55 0.00 7.47 15.39 7.86 4.72 10.01 3.33 25.22 0.00 12.34 24.49 0.00 55.28 98.55 28.85 0.00 34.13 11.43 23.33 11.27 7 E1a_E3a NovelJunction 0 3.41 3.22 0.00 0.00 4.33 0.00 7.95 5.09 0.00 3.12 19.90 0.00 0.00 9.18 4.45 22.39 48.90 5.68 0.00 5.88 5.44 8.63 8.02 8 ER2a ExonRegion 0 3.77 4.31 1.84 2.67 7.97 11.04 8.69 6.67 21.22 12.16 35.10 64.94 61.25 28.32 2.20 27.28 64.30 33.26 19.37 37.57 25.34 14.67 13.57 9 E2a_E3a KnownJunction 0 10.59 0.00 1.83 7.03 19.78 7.38 7.64 14.87 35.76 26.70 58.28 104.88 87.33 30.37 10.51 36.06 80.32 49.74 13.08 62.89 61.22 28.90 17.84 10 ER3a ExonRegion 1 1.90 5.76 5.85 9.31 10.27 21.77 26.32 13.81 38.88 26.65 102.87 207.99 127.76 151.81 13.75 87.35 160.46 74.09 37.62 120.66 93.57 96.78 82.02 11 E3a_E4a KnownJunction 0 6.30 15.19 12.36 5.76 0.00 39.86 55.87 17.00 44.01 34.28 130.40 324.41 179.05 202.66 34.98 173.03 255.35 101.60 30.78 155.45 93.72 141.20 111.74 12 ER4a ExonRegion 0 3.55 10.25 5.44 13.23 12.46 33.89 34.45 22.19 57.37 34.33 133.62 356.72 193.89 168.99 27.05 150.59 225.82 81.08 39.12 157.85 92.80 151.54 121.43 13 E4a_E5a KnownJunction 1 3.48 10.72 5.50 8.52 16.47 67.18 66.11 17.66 56.83 33.12 160.94 328.76 148.85 144.68 15.20 90.49 207.11 56.09 41.13 181.59 124.42 178.07 82.97 14 I4_AR12 ActiveIntronRegion 1 0.00 7.70 0.00 3.02 7.26 0.00 6.15 1.73 2.12 0.57 0.00 68.03 58.96 20.19 8.08 18.47 6.60 0.53 0.00 4.26 0.00 14.58 8.81 15 ER5a ExonRegion 1 2.95 14.91 5.92 8.15 23.80 52.42 42.42 20.53 57.97 35.32 126.36 380.99 188.87 163.36 17.17 108.23 230.10 59.32 37.89 158.73 77.13 163.77 82.10 16 E5a_E6a KnownJunction 0 3.56 23.75 4.38 12.22 31.75 49.80 42.84 18.03 57.06 37.61 122.03 481.51 250.31 160.22 30.41 110.40 198.04 60.69 24.85 164.08 49.48 178.56 112.17 17 E5a_E7a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.51 4.60 1.24 6.95 5.85 0.00 12.18 0.00 0.00 22.35 17.29 0.00 0.00 8.96 12.00 4.18 18 ER6a ExonRegion 1 6.38 26.38 4.05 14.34 17.26 31.53 53.52 26.86 70.45 42.99 159.90 652.63 364.09 214.84 23.32 126.85 209.89 55.28 39.33 178.55 63.34 206.28 126.43 19 E6a_E7a KnownJunction 1 6.74 17.50 4.55 18.88 27.33 68.60 74.06 25.67 75.81 34.60 145.77 694.73 516.20 227.44 32.63 138.94 251.71 74.70 22.21 176.28 61.04 219.03 100.13 20 ER7a ExonRegion 1 8.09 23.53 4.87 18.27 22.07 45.78 60.62 27.05 78.37 46.77 167.17 742.77 400.49 273.40 26.66 193.52 293.41 112.34 57.79 224.90 114.25 185.28 162.53 21 E7a_E8a KnownJunction 1 10.22 18.02 7.86 18.21 26.23 30.32 78.70 28.01 86.28 52.11 174.36 936.16 411.17 290.42 22.99 228.23 387.00 165.36 71.34 229.97 171.56 238.63 186.77 22 ER8a ExonRegion 1 15.24 64.84 9.73 22.10 35.88 61.19 67.54 34.65 83.25 53.42 171.10 538.22 323.65 269.76 35.02 198.00 244.86 124.29 55.10 185.42 136.45 175.00 156.15 23 E8a_E9a KnownJunction 0 64.97 165.23 10.91 34.49 88.54 122.03 86.69 30.11 117.59 80.96 166.09 318.70 188.79 493.03 129.43 222.25 251.89 166.52 105.60 198.14 307.84 170.78 236.37 24 ER9a ExonRegion 0 29.62 83.21 14.49 47.12 74.06 89.44 73.04 61.04 141.65 104.58 175.71 317.74 229.84 336.15 101.34 207.53 277.42 197.98 104.87 233.51 232.19 175.34 232.75 25 E9a_E10a KnownJunction 0 0.00 72.95 19.63 61.30 61.29 130.78 79.10 63.30 170.46 130.82 85.65 56.87 54.05 42.62 30.29 39.14 18.05 236.20 151.06 275.23 87.79 71.58 52.67 26 E9a_E11a NovelJunction 0 7.26 5.06 0.00 2.06 34.30 22.32 28.84 6.65 13.74 4.24 115.92 203.17 289.92 258.82 101.98 210.63 282.37 3.81 0.00 3.26 158.09 140.53 164.84 27 Ix Intron 0 2.83 4.58 0.64 3.29 7.35 6.08 15.85 2.36 3.37 2.41 20.15 105.50 76.55 41.44 4.58 37.69 20.46 3.57 2.91 5.25 4.04 9.69 7.24 28 Ix_AR1 ActiveIntronRegion 0 2.84 4.60 0.64 3.30 7.37 6.10 15.90 2.37 3.38 2.41 20.21 105.78 76.76 41.55 4.59 37.79 20.52 3.58 2.92 5.26 4.05 9.71 7.26 29 I9 Intron 0 8.52 10.17 2.51 8.18 19.01 12.34 22.19 6.96 9.53 7.44 33.41 123.59 104.65 44.46 8.23 45.27 30.71 5.48 5.18 9.47 4.96 20.69 11.24 30 I9_SR1 SilentIntronRegion 0 11.26 8.70 4.00 9.34 16.78 4.78 20.04 4.84 7.69 6.97 28.23 96.37 87.03 44.79 10.25 37.51 29.26 4.13 4.32 12.20 4.83 10.44 8.58 31 I9_AR1 ActiveIntronRegion 0 12.55 2.03 0.00 2.43 10.32 4.85 5.30 3.21 0.00 1.15 7.18 28.45 18.76 10.32 4.77 8.70 6.60 0.00 0.00 0.46 0.00 7.89 0.42 32 I9_AR2 ActiveIntronRegion 0 15.26 3.42 0.26 6.10 11.69 8.30 13.73 5.19 0.26 1.15 13.43 80.44 57.51 30.35 11.61 26.75 10.08 0.97 1.51 2.13 0.00 13.82 3.55 33 I9_AR3 ActiveIntronRegion 0 16.93 6.10 1.23 9.77 13.38 10.09 18.98 5.19 2.47 1.15 22.23 125.55 102.40 43.58 12.09 41.61 16.50 3.70 3.19 2.13 1.10 20.84 9.30 34 I9_AR4 ActiveIntronRegion 0 18.34 5.87 1.23 10.90 10.70 22.41 22.65 6.91 2.47 1.15 27.92 138.54 102.66 48.00 11.93 46.89 16.87 3.70 3.19 2.13 2.20 18.98 11.75 35 I9_AR5 ActiveIntronRegion 0 6.20 9.46 1.87 7.43 19.12 15.45 22.08 7.32 10.54 7.50 33.89 137.19 117.53 41.89 7.52 45.62 28.25 4.65 5.44 8.80 3.73 25.35 11.64 36 I9_SR2 SilentIntronRegion 0 11.60 15.89 2.92 9.40 23.19 12.88 27.14 9.15 10.10 8.95 42.22 122.49 92.30 55.40 7.55 58.38 44.70 11.01 6.09 9.10 10.18 20.49 14.74 37 E10_Aa NovelBoundary 0 12.08 9.01 2.78 12.65 8.49 8.01 30.47 10.88 12.15 3.92 52.12 105.93 84.57 64.28 9.64 49.65 31.14 13.18 8.38 8.31 15.57 9.37 35.68 38 ER10a ExonRegion 0 10.58 68.00 14.31 40.08 53.26 112.69 75.62 60.95 154.04 116.29 129.16 164.47 84.48 79.72 28.81 61.07 54.31 185.96 140.50 274.11 86.99 58.31 48.63 39 E10_Da NovelBoundary 0 10.15 12.56 7.66 10.35 26.74 5.22 41.42 13.31 5.38 1.37 39.96 162.50 66.39 44.50 8.90 73.06 47.31 9.37 16.09 11.51 2.72 5.94 16.73 40 E10a_E11a KnownJunction 1 18.97 57.49 13.78 26.87 69.52 102.95 95.88 39.76 155.03 95.39 74.76 156.05 79.70 39.08 14.71 34.26 0.00 127.55 112.76 283.54 57.95 22.11 51.39 41 I10 Intron 0 9.21 10.22 2.05 8.53 19.06 12.10 23.33 7.34 5.52 6.41 27.83 102.40 67.27 34.23 7.07 26.75 23.03 5.60 1.43 8.30 2.98 17.82 6.61 42 I10_SR1 SilentIntronRegion 1 6.17 4.24 2.38 1.87 8.72 3.14 6.85 0.30 1.45 0.72 36.01 62.72 17.96 15.36 9.45 18.94 18.39 9.24 0.00 4.74 2.52 8.87 2.10 43 I10_AR1 ActiveIntronRegion 0 9.40 10.58 2.04 8.92 19.69 12.63 24.30 7.75 5.76 6.74 27.48 104.88 70.16 35.36 6.96 27.26 23.35 5.42 1.52 8.52 3.01 18.36 6.87 44 E11_Aa NovelBoundary 1 16.74 18.09 1.18 18.85 56.20 19.02 67.61 17.00 12.82 12.97 60.33 80.73 171.90 78.40 15.70 55.54 37.96 7.83 0.00 3.13 11.24 27.13 11.27 45 ER11a ExonRegion 0 36.75 74.85 22.27 32.42 85.17 116.70 104.65 58.25 154.57 105.10 184.90 299.84 296.07 283.84 88.46 142.16 141.45 192.76 95.97 249.75 150.88 132.06 176.51 46 E11a_E12a KnownJunction 0 43.49 101.76 38.02 49.04 86.67 144.24 129.75 80.14 125.66 108.63 244.43 456.60 368.97 366.30 93.21 246.26 241.42 225.51 84.24 223.39 201.70 227.12 248.07 47 E11a_E13a NovelJunction 0 0.00 0.00 0.00 0.00 3.82 5.79 0.00 4.76 0.00 1.24 0.00 19.81 22.08 17.48 0.00 11.02 4.49 0.00 0.00 2.62 5.93 7.65 19.46 48 I11_AR2 ActiveIntronRegion 0 2.12 7.58 0.24 3.75 12.46 5.81 11.98 4.21 7.87 3.17 9.74 68.84 69.74 17.07 3.29 11.33 11.97 3.01 0.80 4.70 1.40 6.82 2.58 49 ER12a ExonRegion 0 60.46 131.41 24.49 41.44 98.49 140.77 107.96 79.86 146.64 119.06 259.62 555.03 337.33 364.97 121.06 330.72 287.38 242.63 113.03 229.57 238.40 213.99 239.18 50 E12a_E13a KnownJunction 0 30.15 121.29 26.23 43.18 140.41 136.68 175.37 93.20 141.03 100.95 221.06 522.77 350.30 410.86 82.70 219.09 227.68 174.15 125.84 215.98 234.69 226.20 226.30 51 ER13a ExonRegion 0 115.62 286.53 79.97 131.84 226.84 190.18 152.27 164.38 165.00 161.42 132.98 470.83 255.08 195.10 136.95 133.81 127.29 54.68 65.00 148.05 61.45 275.55 115.38