Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 N4BP2L2 Gene 0 226.56 280.76 104.93 290.37 199.07 284.37 170.91 132.39 126.38 158.88 126.98 504.27 286.13 134.57 122.69 149.18 156.28 73.58 75.84 159.46 57.15 168.10 143.33 2 483088 Transcript 0 46.47 14.57 2.90 4.07 13.94 11.98 19.23 6.33 1.71 1.25 8.02 0.00 2.03 12.35 9.89 11.68 19.00 6.39 2.26 15.66 3.70 5.36 5.39 3 267068 Transcript 1 354.16 338.05 93.20 275.07 283.06 478.62 265.30 130.80 121.12 161.24 114.68 177.08 133.94 144.31 112.46 322.25 176.78 162.54 143.38 192.00 121.99 169.13 357.47 4 446957 Transcript 0 0.27 0.01 0.00 0.19 0.02 0.01 0.31 0.02 0.07 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.11 0.00 0.00 0.00 0.00 0.00 5 475731 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 ER1a ExonRegion 0 15.97 7.90 1.34 2.39 4.62 5.04 8.12 2.67 0.70 0.83 3.82 0.00 4.05 8.34 9.76 4.05 10.50 3.99 0.65 7.74 1.40 2.08 3.27 7 E1a_E1c KnownJunction 0 76.98 21.25 4.46 5.76 23.26 18.91 30.34 9.98 2.72 1.67 12.21 0.00 0.00 16.36 10.01 19.31 27.49 8.79 3.86 23.59 5.99 8.63 7.51 8 E1a_E2a NovelJunction 0 99.20 42.10 7.27 17.58 56.96 50.65 38.24 2.18 15.39 1.67 30.59 0.00 0.00 16.89 5.19 15.04 16.83 8.25 0.00 22.50 31.63 38.45 63.17 9 E1a_E3a NovelJunction 0 3.78 0.00 0.00 1.70 3.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.36 0.00 0.00 0.00 9.41 0.00 0.00 0.00 4.35 10 ER1b ExonRegion 1 297.37 174.89 23.28 63.03 110.37 231.98 129.42 38.03 43.23 49.32 75.38 6.49 52.76 69.84 63.10 184.27 155.14 104.86 58.93 116.49 104.13 64.07 278.25 11 ER1c ExonRegion 1 479.91 441.61 85.78 172.91 353.82 675.93 373.50 98.36 121.29 137.85 171.90 39.93 112.41 214.97 105.83 568.59 287.74 285.28 223.42 267.45 218.45 198.78 641.50 12 E1_Ac KnownBoundary 0 200.04 159.38 69.60 87.83 140.15 305.56 192.33 43.54 73.38 92.16 44.64 121.54 84.09 54.15 48.33 128.51 185.97 35.48 21.65 197.76 39.17 11.70 61.21 13 ER1d ExonRegion 1 309.24 152.06 63.83 147.32 141.37 201.58 141.90 70.08 128.66 112.80 172.38 114.60 107.73 89.60 57.63 116.36 298.53 74.02 45.17 188.04 154.13 90.22 127.57 14 E1b_E2a KnownJunction 1 90.46 69.59 73.39 195.85 11.63 78.99 18.42 93.94 146.15 154.40 194.05 137.29 202.91 146.33 62.43 129.03 254.60 159.39 60.61 155.70 99.89 80.40 142.47 15 E1b_E3a NovelJunction 0 10.37 2.57 3.58 6.06 0.00 5.28 0.00 10.31 4.54 12.11 7.53 13.95 0.00 0.00 0.00 0.00 9.16 3.56 0.00 5.24 14.09 3.12 3.50 16 ER2a ExonRegion 0 234.68 416.57 137.39 323.72 225.50 329.49 191.43 151.72 178.81 201.39 221.63 776.69 543.49 225.51 130.77 257.44 293.70 123.74 100.12 263.61 92.68 255.84 254.81 17 E2_Da KnownBoundary 1 138.62 573.91 153.04 429.02 261.97 506.70 307.73 145.44 192.59 237.54 141.98 1507.24 911.14 194.01 214.11 171.41 175.60 60.69 56.47 188.68 31.20 292.51 128.73 18 ER2b ExonRegion 0 255.58 389.23 169.15 390.94 271.96 360.70 234.74 178.99 203.83 223.57 236.96 1110.64 601.43 220.82 187.72 232.02 274.90 107.52 112.18 259.90 76.36 270.17 206.05 19 E2_Ab KnownBoundary 0 244.04 342.24 211.61 479.89 345.76 494.03 353.21 241.72 215.02 246.43 245.59 1035.79 542.98 251.05 320.17 279.84 338.29 136.01 160.76 306.10 119.54 351.73 275.47 20 ER2c ExonRegion 0 318.30 263.17 161.48 401.07 278.89 397.35 281.34 183.60 165.34 224.48 282.49 1036.21 505.44 311.70 221.48 269.27 301.24 116.67 133.40 277.25 110.80 268.09 211.85 21 E2_Db NovelBoundary 0 80.31 61.83 39.12 139.18 70.54 39.64 90.58 41.98 49.68 46.10 29.59 221.02 74.02 43.15 27.94 73.23 56.29 27.23 54.97 105.53 24.15 55.05 61.12 22 E2b_E3a KnownJunction 0 353.47 251.86 143.46 348.54 178.69 345.60 196.30 131.77 111.75 179.63 233.64 920.55 357.12 254.75 221.89 172.95 223.09 92.65 59.77 203.45 84.39 201.40 146.40 23 E2b_E6a NovelJunction 0 2.89 22.89 1.27 13.38 0.00 27.03 7.33 5.18 3.07 1.61 0.00 17.86 0.00 3.00 0.00 0.00 0.00 2.11 4.80 2.75 0.00 0.00 0.00 24 Ix Intron 0 107.66 99.64 70.19 146.21 109.70 64.52 84.44 82.37 80.03 68.20 17.55 178.85 139.64 32.83 44.14 43.58 37.68 20.51 33.69 62.28 18.48 67.48 69.79 25 Ix_AR7 ActiveIntronRegion 0 69.66 96.51 53.70 135.33 86.18 54.58 92.81 60.04 73.87 56.43 14.16 191.84 150.48 32.49 39.45 34.90 33.43 16.94 25.34 63.69 16.21 54.85 64.74 26 Ix_SR3 SilentIntronRegion 0 122.62 125.63 73.55 134.19 108.22 56.90 84.39 72.85 67.36 56.82 18.12 159.49 106.97 25.92 40.75 46.65 41.86 22.69 36.64 57.83 23.76 54.40 67.14 27 Ix_AR6 ActiveIntronRegion 0 189.29 101.04 89.90 168.73 151.81 79.08 83.64 121.09 92.75 99.46 15.62 168.71 167.21 34.39 50.90 48.63 30.27 21.02 36.14 49.40 17.20 97.53 65.06 28 Ix_AR2 ActiveIntronRegion 0 103.61 88.71 84.87 174.94 126.66 81.96 80.05 105.01 99.99 83.66 23.16 205.77 161.06 40.07 51.46 50.31 45.04 23.44 41.16 75.58 17.66 87.34 85.15 29 Ix_SR1 SilentIntronRegion 0 94.07 38.19 16.34 47.55 65.70 40.75 33.69 26.70 17.29 25.10 3.22 50.51 23.45 7.94 33.85 37.65 1.10 6.57 28.67 17.49 2.69 25.47 30.67 30 Ix_AR1 ActiveIntronRegion 0 121.52 45.22 44.51 96.04 97.54 52.19 67.36 81.58 64.69 61.77 13.60 102.20 87.69 35.85 44.52 41.37 25.85 17.99 30.78 44.64 14.46 54.59 55.56 31 ER3a ExonRegion 0 357.84 316.25 152.48 360.77 246.45 367.33 227.98 175.82 145.34 196.32 186.44 580.56 303.54 192.17 168.76 177.21 192.69 93.07 96.81 160.97 94.39 206.69 151.46 32 E3_Da NovelBoundary 0 760.58 505.44 180.89 225.91 190.24 182.68 243.38 181.96 174.13 138.47 107.45 505.06 378.06 213.73 160.08 243.70 119.49 58.20 91.11 110.77 114.35 99.14 119.00 33 E3a_E4a KnownJunction 0 402.29 206.08 81.84 250.12 338.37 388.41 158.32 117.96 109.72 163.40 129.77 304.30 173.37 204.90 178.50 93.39 151.10 44.60 86.78 188.30 88.96 215.66 129.67 34 Ix Intron 0 221.87 125.56 91.32 197.10 197.98 166.15 149.87 150.27 130.44 117.50 66.54 353.59 316.65 111.40 99.51 110.83 75.54 37.71 54.11 83.16 29.60 165.88 99.34 35 Ix_AR5 ActiveIntronRegion 0 355.90 160.84 131.93 183.89 219.55 92.85 123.80 170.42 108.49 127.27 42.86 319.96 270.14 72.94 71.77 59.86 55.51 18.06 37.08 60.16 14.24 93.17 58.62 36 Ix_SR4 SilentIntronRegion 0 25.05 30.78 9.46 23.87 56.32 51.88 70.50 15.10 14.14 14.85 23.23 131.15 82.19 61.67 42.66 41.45 38.08 10.63 28.41 35.26 13.78 44.87 41.94 37 Ix_AR4 ActiveIntronRegion 0 139.76 74.66 35.89 92.81 219.21 166.65 166.72 83.93 78.10 65.03 45.49 232.70 184.83 89.91 70.34 91.75 55.57 35.61 35.84 55.08 25.61 84.25 85.03 38 Ix_SR3 SilentIntronRegion 0 435.40 124.92 62.32 130.84 308.48 208.79 241.72 101.98 75.52 81.27 64.34 326.57 229.14 116.70 117.29 130.77 109.40 52.53 82.82 80.85 56.04 142.57 101.52 39 Ix_AR3 ActiveIntronRegion 0 166.46 83.21 41.74 75.30 209.15 177.27 126.25 69.35 45.96 46.31 49.09 259.86 160.34 110.37 72.83 94.86 81.56 22.10 54.68 54.79 57.11 82.39 70.30 40 Ix_AR2 ActiveIntronRegion 0 168.39 90.64 93.82 236.87 200.91 194.81 169.94 184.14 176.37 158.39 81.65 470.80 417.77 135.04 108.60 143.71 96.97 46.55 71.49 100.73 29.56 225.14 127.18 41 Ix_AR1 ActiveIntronRegion 0 335.23 206.77 127.87 270.86 235.37 207.28 167.19 187.83 158.85 133.71 85.13 381.32 376.27 129.70 135.03 130.51 82.56 47.94 59.16 104.32 41.22 211.29 115.46 42 ER4a ExonRegion 0 286.90 153.66 76.45 185.28 136.04 257.87 121.05 70.65 69.10 100.52 49.19 220.75 88.48 85.26 91.05 58.67 74.33 36.39 39.23 76.74 33.70 87.09 57.08 43 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 E4a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 Ix Intron 0 267.89 77.75 44.16 99.02 155.81 154.22 100.93 81.58 62.16 58.84 40.39 165.52 126.67 100.00 115.66 94.14 47.28 40.00 36.00 57.05 19.69 105.42 81.84 46 Ix_AR1 ActiveIntronRegion 0 269.24 78.15 44.39 99.52 156.61 155.01 101.44 81.99 62.49 59.15 40.60 166.33 127.31 100.51 116.25 94.62 47.52 40.21 36.19 57.34 19.79 105.96 82.24 47 ER5a ExonRegion 1 465.36 402.65 62.67 185.87 122.49 247.35 170.24 81.60 73.05 97.92 36.40 344.00 101.17 109.74 158.66 106.69 57.49 61.72 67.47 80.49 22.41 149.23 96.30 48 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 ER6a ExonRegion 0 331.74 595.55 110.46 320.53 328.47 530.47 338.64 172.16 114.33 148.16 114.09 396.97 143.54 141.68 222.20 102.99 105.30 55.45 71.76 117.76 60.37 171.37 114.51 50 E6_Da KnownBoundary 0 290.87 322.90 134.97 396.15 583.62 391.25 283.66 175.76 139.93 170.01 74.18 568.54 244.14 147.98 174.55 127.57 95.75 98.29 121.04 156.79 107.68 190.44 126.42 51 E6_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 E6b_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 ER6b ExonRegion 0 343.82 339.27 206.13 647.82 472.27 402.32 266.26 301.52 210.04 265.64 148.08 736.25 260.82 239.83 323.97 222.41 163.03 145.66 129.89 190.54 96.72 256.74 187.13 54 ER6c ExonRegion 0 228.41 234.49 100.63 377.23 212.29 281.30 157.10 163.24 120.95 184.64 57.45 314.23 155.47 73.66 119.08 75.91 65.82 39.81 63.35 116.56 25.52 139.49 73.44 55 E6_Dc NovelBoundary 1 127.43 152.74 31.31 84.64 185.40 179.39 165.12 68.55 77.75 71.83 12.21 119.44 124.34 21.90 24.85 46.65 22.91 20.48 81.98 87.76 6.18 79.17 33.04 56 Ix Intron 0 25.10 50.94 18.59 58.93 55.51 44.81 52.55 24.40 23.41 24.55 4.91 52.97 35.00 7.95 12.91 12.54 7.25 8.12 14.47 32.74 4.03 20.86 13.91 57 Ix_AR3 ActiveIntronRegion 0 24.62 39.50 19.33 57.75 57.41 43.26 74.39 23.79 27.68 25.21 7.02 62.45 50.13 9.05 18.17 14.11 11.72 4.62 21.22 41.25 2.28 24.86 12.90 58 Ix_SR2 SilentIntronRegion 0 18.69 51.67 16.98 49.56 41.05 38.48 40.26 14.67 18.69 18.92 4.82 44.96 30.39 7.42 11.71 15.22 6.50 9.78 14.35 32.18 3.52 16.97 17.51 59 Ix_AR2 ActiveIntronRegion 0 35.43 71.55 17.48 59.53 59.57 46.09 41.02 29.14 25.53 26.16 4.49 41.26 21.26 9.55 13.72 13.55 6.85 13.97 16.17 29.86 11.55 20.70 13.77 60 Ix_SR1 SilentIntronRegion 0 37.82 77.08 26.71 86.20 94.92 58.65 68.76 39.03 29.11 37.29 0.83 95.20 41.39 9.62 9.28 10.35 1.17 3.45 8.87 31.35 3.17 32.34 9.80 61 Ix_AR1 ActiveIntronRegion 0 25.33 41.55 18.55 64.88 60.58 50.28 52.74 31.59 23.64 27.30 4.65 50.47 34.20 6.48 10.80 7.74 6.47 7.06 9.75 28.43 2.52 19.74 11.16 62 Ix_AR3 ActiveIntronRegion 0 6.38 15.45 23.78 16.41 18.71 6.19 10.85 5.90 14.20 4.34 1.63 7.74 12.27 1.28 7.04 9.32 6.77 8.97 4.99 14.64 3.18 1.51 6.73 63 Ix_AR17 ActiveIntronRegion 0 4.23 5.23 12.25 16.94 69.19 8.91 100.81 6.91 7.23 5.73 0.00 16.08 23.45 3.25 20.31 5.94 14.62 5.54 0.91 17.02 4.09 2.08 9.65 64 E7_Aa NovelBoundary 0 88.68 70.97 79.57 59.07 65.53 141.28 88.63 30.39 99.71 34.81 30.22 138.35 121.26 38.67 65.52 23.41 14.31 12.44 17.69 62.06 21.50 48.68 19.97 65 ER7a ExonRegion 0 0.12 0.05 0.03 1.52 0.17 0.07 0.46 0.18 0.07 0.06 0.00 0.05 0.00 0.05 0.02 0.07 0.02 0.87 0.00 0.03 0.00 0.04 0.04 66 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67 ER8a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69 ER9a ExonRegion 0 1.98 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71 ER10a ExonRegion 0 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00