Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 EEF1DP3 Gene 0 1.60 0.97 3.83 2.39 3.11 2.74 4.33 4.04 1.62 2.66 6.79 41.63 16.87 11.22 3.89 23.24 5.59 15.96 1.74 6.16 0.46 0.35 0.62 2 428783 Transcript 0 0.00 0.17 0.61 0.20 1.42 2.65 0.89 1.33 0.68 0.68 14.40 66.40 20.20 17.75 3.38 17.13 7.70 12.25 1.48 4.70 0.09 0.54 0.75 3 490410 Transcript 0 0.80 0.40 0.20 1.84 2.34 2.09 5.29 1.54 1.30 1.03 2.80 33.22 9.79 6.98 0.60 17.88 5.80 8.77 1.21 4.54 0.24 0.00 0.32 4 453456 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 3.89 17.58 5.68 4.36 1.05 3.51 3.23 1.77 0.00 1.27 0.00 0.00 0.00 6 E1_Da NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 2.21 0.00 0.00 1.58 0.00 0.00 0.00 0.00 0.00 12.82 0.00 1.53 0.00 0.00 0.00 0.00 0.00 7 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.32 36.31 14.77 2.12 0.00 16.49 0.00 2.07 0.00 2.68 0.00 0.00 0.00 8 E1a_E3a NovelJunction 0 0.00 0.00 9.70 1.93 0.00 0.00 4.33 1.81 3.21 2.82 25.16 5.40 7.63 44.91 4.45 24.44 18.98 34.86 0.00 8.12 0.00 0.00 0.00 9 I1 Intron 0 0.67 0.39 1.46 1.44 1.86 1.72 4.28 2.04 0.71 1.10 1.14 30.61 12.62 1.68 1.53 8.99 3.96 3.96 0.82 2.45 0.02 0.05 0.16 10 I1_SR1 SilentIntronRegion 0 1.49 0.80 3.93 2.89 5.02 4.50 5.90 2.93 1.04 1.27 1.81 37.48 12.09 2.30 2.44 10.24 5.24 7.06 1.56 2.44 0.00 0.11 0.28 11 I1_AR1 ActiveIntronRegion 0 0.93 0.77 4.30 2.49 13.13 5.75 10.38 3.26 0.74 1.55 0.41 46.99 14.21 1.15 3.31 6.28 1.19 2.14 0.68 3.63 0.00 0.00 0.00 12 I1_AR2 ActiveIntronRegion 1 0.00 1.20 0.00 0.64 0.00 5.50 1.32 1.73 0.51 0.00 0.00 24.70 0.00 2.39 0.00 7.52 6.60 1.85 0.00 0.00 0.00 0.00 0.00 13 I1_AR3 ActiveIntronRegion 0 0.00 0.00 0.00 0.00 0.00 5.50 1.32 1.73 0.00 0.00 0.00 16.08 0.00 1.62 0.00 2.97 6.60 1.85 0.00 0.00 0.00 0.00 0.00 14 I1_SR2 SilentIntronRegion 0 1.05 0.76 2.60 2.07 3.89 4.62 7.26 3.66 1.10 1.99 2.68 39.47 19.97 2.31 2.14 16.22 6.10 7.29 1.51 2.81 0.04 0.12 0.27 15 I1_AR4 ActiveIntronRegion 0 0.36 0.69 1.15 2.42 5.28 5.68 6.89 5.72 1.19 2.05 4.12 52.02 36.93 2.49 2.90 18.18 9.17 10.08 1.53 2.44 0.57 0.00 0.00 16 I1_SR3 SilentIntronRegion 0 0.81 0.43 1.65 1.70 1.56 1.87 5.16 1.80 0.57 0.81 1.49 31.76 14.16 2.10 1.53 9.43 4.32 3.69 0.92 2.60 0.03 0.02 0.14 17 I1_AR5 ActiveIntronRegion 0 1.69 0.76 2.88 2.96 3.02 6.33 8.84 4.19 0.27 3.24 3.71 52.65 21.63 0.91 2.73 9.84 8.23 5.76 0.00 2.64 0.00 0.00 0.33 18 I1_SR4 SilentIntronRegion 0 0.71 0.35 1.32 1.28 1.65 1.43 4.70 2.09 0.96 2.06 0.57 27.71 12.80 2.04 1.93 13.03 5.18 7.25 1.05 3.21 0.00 0.04 0.26 19 I1_AR6 ActiveIntronRegion 0 0.91 0.00 0.15 1.29 1.77 1.31 3.73 1.02 0.29 0.89 0.72 24.70 9.56 1.32 2.22 5.72 6.56 1.21 1.01 3.53 0.00 0.33 0.00 20 I1_SR5 SilentIntronRegion 0 0.42 0.26 0.83 0.91 0.99 0.82 2.97 1.82 0.65 0.81 0.77 29.95 12.20 1.22 1.22 7.42 3.15 2.42 0.70 2.35 0.03 0.05 0.03 21 I1_AR7 ActiveIntronRegion 0 0.00 0.40 0.00 0.90 2.09 0.00 3.36 1.26 0.00 0.16 1.13 34.52 15.44 1.02 1.08 6.67 3.05 1.71 0.00 2.88 0.00 0.00 0.00 22 I1_SR6 SilentIntronRegion 0 0.30 0.22 0.64 0.84 1.01 0.49 2.72 1.73 0.69 1.02 0.55 25.30 9.27 1.12 1.04 6.54 2.55 2.46 0.33 1.99 0.02 0.05 0.20 23 E2_Aa NovelBoundary 0 0.00 0.00 1.24 0.00 0.00 0.00 7.82 0.00 0.00 1.61 0.00 27.76 0.00 2.18 0.00 0.00 0.00 1.66 0.00 3.26 0.00 0.00 0.00 24 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.52 46.01 31.96 13.85 2.41 11.54 5.99 6.20 0.00 2.16 0.00 0.11 0.10 25 E2_Da NovelBoundary 0 0.00 0.00 2.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31.66 6.82 4.47 4.70 0.00 4.77 0.00 0.00 2.81 0.00 0.00 0.00 26 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.21 78.48 14.45 16.72 4.45 14.44 0.00 4.85 0.00 0.00 0.00 0.00 0.00 27 I2 Intron 0 0.12 0.00 0.32 0.17 0.26 0.33 1.25 0.63 0.28 0.28 0.58 18.88 7.23 1.02 0.65 3.74 1.76 1.26 0.52 1.54 0.06 0.23 0.12 28 I2_SR1 SilentIntronRegion 0 0.12 0.00 0.33 0.17 0.26 0.34 1.28 0.65 0.29 0.29 0.57 19.28 7.22 1.03 0.67 3.68 1.81 1.28 0.54 1.56 0.03 0.23 0.12 29 ER3a ExonRegion 0 0.00 1.20 4.26 0.00 2.12 15.53 6.24 7.54 3.80 3.58 46.42 186.99 74.53 76.51 10.28 71.16 31.85 52.46 10.33 26.76 0.65 3.65 5.16 30 E3_Da NovelBoundary 0 0.00 0.00 6.80 1.43 0.00 5.11 2.16 4.31 1.74 1.24 2.26 51.77 19.80 7.24 0.00 4.36 4.21 1.95 0.00 6.20 0.00 0.00 0.00 31 E3a_E4c KnownJunction 1 0.00 0.00 0.00 1.43 7.81 2.56 0.00 1.77 0.00 1.05 26.38 94.98 0.00 9.30 5.19 0.00 12.81 18.36 0.00 0.00 0.00 0.00 0.00 32 I3 Intron 0 0.40 0.31 0.69 0.80 1.38 0.79 2.75 2.74 0.73 1.23 2.12 39.23 23.13 4.73 1.10 10.76 5.89 5.42 1.20 4.60 0.26 0.29 0.25 33 I3_SR1 SilentIntronRegion 0 0.40 0.31 0.69 0.80 1.38 0.79 2.75 2.74 0.73 1.23 2.12 39.25 23.14 4.74 1.10 10.77 5.89 5.43 1.20 4.60 0.26 0.29 0.25 34 E4_Aa NovelBoundary 0 7.56 0.00 0.00 3.63 8.23 0.00 6.32 3.61 0.00 1.67 0.00 12.00 14.12 2.41 0.00 19.99 0.00 13.85 4.24 5.62 0.00 0.00 0.00 35 ER4a ExonRegion 0 0.80 0.40 0.20 1.84 2.34 2.09 5.29 1.54 1.30 1.03 2.80 33.22 9.79 6.98 0.60 17.88 5.80 8.77 1.21 4.54 0.24 0.00 0.32 36 E4_Ab KnownBoundary 0 0.00 3.35 0.00 2.06 0.00 2.84 12.76 0.00 0.00 4.06 5.21 63.47 6.82 2.35 0.00 15.21 4.11 13.89 0.00 11.95 0.00 0.00 0.00 37 ER4b ExonRegion 0 2.24 1.42 4.44 3.19 3.49 1.40 4.76 4.92 1.94 2.47 3.01 36.63 15.40 4.49 3.54 17.13 2.62 7.48 0.58 4.77 0.00 0.23 0.43 38 E4_Ac KnownBoundary 0 0.00 2.89 7.92 3.33 3.74 0.00 6.27 10.23 1.13 6.77 0.00 24.91 12.66 0.00 0.00 14.70 0.00 10.24 0.00 3.00 0.00 0.00 0.00 39 ER4c ExonRegion 0 2.79 1.23 6.81 2.06 3.73 2.99 3.22 4.91 1.53 4.42 9.92 46.42 18.26 13.70 6.39 29.61 5.75 30.93 2.20 7.43 0.96 0.61 0.29 40 E4_Da KnownBoundary 0 3.56 0.00 7.89 4.99 0.00 4.88 0.00 1.60 1.79 1.67 9.16 0.00 19.97 18.72 18.54 11.79 8.60 48.29 0.00 25.12 3.15 0.00 0.00 41 ER4d ExonRegion 0 1.14 0.75 7.72 3.37 4.57 4.29 3.36 5.94 1.01 5.47 8.71 19.10 13.84 15.09 7.72 35.68 4.91 32.42 3.43 6.52 2.01 0.00 0.71 42 ER4e ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.11 0.06 4.47 0.00 1.41 0.28 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 IG47 Intergenic 0 1.15 0.58 2.55 2.63 2.65 2.24 4.70 3.57 1.57 1.86 4.81 54.76 24.60 8.16 3.00 17.18 5.93 6.92 1.09 5.14 0.23 0.55 0.46 44 IG47_SR1 SilentIntergenicRegion 0 2.65 0.94 7.80 5.20 5.96 4.46 6.74 7.19 2.50 4.11 8.26 84.03 36.13 13.59 5.78 25.10 8.28 15.27 1.87 8.00 0.22 0.96 0.23 45 IG47_SR2 SilentIntergenicRegion 0 2.40 1.11 5.91 4.42 4.59 3.43 7.91 4.45 1.89 1.79 7.95 67.85 27.77 14.53 4.10 23.91 6.95 10.05 2.41 7.35 0.31 1.16 0.49 46 IG47_AR2 ActiveIntergenicRegion 0 0.00 0.00 3.97 1.87 1.49 6.23 8.16 0.97 1.67 1.23 12.12 95.66 20.98 25.29 4.17 30.79 10.72 8.91 1.00 3.69 0.00 4.04 0.87 47 IG47_SR3 SilentIntergenicRegion 0 0.87 0.59 1.42 2.28 2.07 1.68 4.48 3.01 1.72 1.91 4.53 52.68 23.68 7.66 2.86 16.96 5.75 5.54 0.87 4.83 0.24 0.51 0.58 48 IG47_AR3 ActiveIntergenicRegion 0 1.20 0.00 0.36 2.87 2.53 0.00 1.25 1.03 1.94 0.00 3.87 48.56 27.51 0.79 1.88 3.13 1.70 2.35 0.00 3.68 0.00 0.00 0.00 49 IG47_AR4 ActiveIntergenicRegion 0 1.57 0.00 0.00 2.40 2.84 0.00 5.56 3.60 2.12 0.00 1.74 63.04 11.82 4.42 2.55 5.11 2.05 5.21 0.00 1.91 0.00 0.00 0.00 50 IG47_AR5 ActiveIntergenicRegion 0 2.12 0.00 0.00 5.72 8.03 0.00 8.83 5.19 1.48 0.00 0.64 56.28 20.64 1.08 0.39 7.93 0.00 3.57 0.00 0.00 0.00 0.00 0.00 51 IG47_AR6 ActiveIntergenicRegion 0 2.12 0.00 0.00 5.45 8.03 0.00 8.83 5.76 1.24 0.00 0.00 55.56 18.76 0.00 0.00 11.89 0.00 1.85 0.00 0.00 0.00 0.00 0.00 52 IG47_AR7 ActiveIntergenicRegion 0 1.24 0.22 1.35 1.51 3.01 0.60 2.63 4.26 1.00 1.11 3.20 47.00 12.36 3.95 1.38 15.65 7.07 6.02 0.35 4.87 0.00 0.00 1.28 53 IG47_SR4 SilentIntergenicRegion 0 0.32 0.17 0.63 1.16 1.11 1.79 2.37 2.50 0.59 0.75 1.75 35.38 20.63 2.64 1.38 9.48 4.29 4.00 0.57 3.25 0.18 0.00 0.20