Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-556N21.1 Gene 0 3.87 28.74 40.15 18.50 2.00 5.58 4.45 3.01 5.98 6.33 0.54 6.62 4.23 1.83 4.33 1.84 1.58 5.22 1.93 11.86 2.92 1.23 2.85 2 453498 Transcript 0 0.56 1.37 45.84 8.49 0.51 6.64 2.29 0.00 4.81 7.25 0.00 0.26 0.00 0.05 0.00 0.00 0.00 4.84 0.00 0.44 0.18 0.65 0.00 3 381974 Transcript 0 1.18 14.77 12.26 8.53 0.89 3.30 1.30 0.68 2.64 2.22 0.44 2.23 2.36 1.38 3.25 0.73 1.22 1.88 1.62 4.29 1.12 0.58 0.67 4 440905 Transcript 0 1.91 12.30 5.29 3.21 1.09 0.88 2.27 1.04 1.83 0.66 0.21 4.89 3.23 0.94 2.42 1.33 0.48 1.57 0.68 9.11 2.13 0.46 2.90 5 450973 Transcript 0 1.06 9.83 17.77 7.72 0.89 0.61 1.10 0.00 1.65 3.44 0.00 2.89 2.35 0.00 0.00 0.99 0.55 1.85 0.00 0.71 0.37 0.00 0.49 6 ER1a ExonRegion 0 0.00 0.00 11.42 4.04 2.10 1.18 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 7 ER2a ExonRegion 0 0.00 0.92 55.10 11.84 0.69 7.04 1.80 0.00 5.02 12.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.88 0.00 0.00 0.00 2.77 0.00 8 E2_Da NovelBoundary 0 27.93 41.11 74.27 50.08 44.57 41.85 77.55 48.92 52.20 54.15 11.85 24.01 25.16 19.37 8.78 47.68 56.29 54.88 55.81 80.02 41.64 11.08 27.49 9 E2a_E3a KnownJunction 0 0.00 0.00 72.44 12.39 0.00 12.78 4.50 0.00 4.57 8.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.07 0.00 0.00 0.00 10 ER3a ExonRegion 0 0.85 2.07 49.60 11.45 0.00 4.80 6.59 0.00 6.87 12.26 0.00 1.82 0.00 0.00 0.00 0.00 0.00 4.82 0.00 0.00 0.00 1.13 0.00 11 E3a_E4a KnownJunction 0 2.96 6.58 30.07 0.00 0.00 0.00 1.77 0.00 4.80 5.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.46 0.00 0.00 0.00 0.00 0.00 12 ER4a ExonRegion 0 0.14 0.00 39.80 10.95 0.80 5.21 1.34 0.00 6.87 5.05 0.00 0.00 0.00 0.36 0.00 0.00 0.00 5.03 0.00 0.00 1.27 0.63 0.00 13 E4a_E5b KnownJunction 0 0.00 0.00 62.42 8.76 0.00 15.45 0.00 0.00 4.54 6.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.04 0.00 0.00 0.00 0.00 0.00 14 ER5a ExonRegion 0 2.37 14.68 19.61 14.23 1.78 6.60 2.60 1.36 5.28 2.86 0.88 4.46 4.72 2.75 6.51 1.46 2.44 3.77 3.24 8.58 2.24 1.17 1.34 15 E5_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER5b ExonRegion 0 0.31 6.07 89.29 20.51 0.00 16.23 6.71 1.53 10.08 8.55 0.00 0.00 0.00 0.08 1.76 0.00 0.00 8.66 0.00 10.29 3.58 4.41 0.48 17 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER6a ExonRegion 0 0.42 31.68 84.31 29.14 0.79 12.56 9.53 0.47 6.25 11.03 0.00 2.24 0.00 0.00 0.32 2.86 0.00 11.95 0.00 5.96 9.55 0.62 3.34 19 E6a_E7b KnownJunction 0 3.26 18.02 108.98 23.41 7.30 5.11 9.58 0.00 6.77 9.89 0.00 0.00 0.00 0.00 0.00 7.35 0.00 8.58 0.00 3.26 6.18 0.00 0.00 20 Ix Intron 0 0.61 16.70 10.21 5.52 1.54 0.94 2.75 1.73 2.76 1.64 0.00 0.85 0.00 0.00 0.00 0.19 0.63 2.41 0.51 11.62 2.74 0.00 0.84 21 Ix_AR1 ActiveIntronRegion 0 0.92 29.79 19.43 8.22 2.25 1.59 4.87 1.12 4.37 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 12.42 6.42 0.00 0.64 22 E7_Aa NovelBoundary 0 0.00 31.24 25.31 25.87 3.14 0.00 2.21 4.39 12.04 1.40 0.00 25.21 0.00 0.00 0.00 0.00 4.21 11.65 0.00 17.39 5.56 0.00 12.12 23 ER7a ExonRegion 0 5.72 36.91 15.88 9.62 3.28 2.64 6.81 3.13 5.48 1.97 0.64 14.66 9.68 2.82 7.26 3.98 1.45 4.71 2.05 27.33 6.39 1.39 8.71 24 E7_Ab KnownBoundary 0 29.78 88.93 30.69 11.19 27.93 17.60 52.69 12.40 16.12 8.22 6.32 18.61 60.22 14.24 10.38 17.52 23.00 33.08 31.81 99.97 5.37 5.63 40.38 25 ER7b ExonRegion 0 8.79 64.13 96.08 44.90 3.14 7.43 10.51 7.55 12.73 17.89 1.19 13.85 8.86 3.00 7.42 5.71 2.85 16.58 2.55 32.31 8.83 1.60 9.27 26 E7_Da NovelBoundary 0 5.93 83.67 55.35 47.35 0.00 0.00 0.00 8.95 10.21 9.00 0.00 5.85 0.00 0.00 5.69 0.00 0.00 4.89 4.05 23.20 8.65 0.00 0.00 27 E7a_E8b KnownJunction 0 3.56 51.57 125.93 49.54 3.23 5.56 7.77 0.00 8.36 22.75 0.00 12.60 20.13 0.00 0.00 8.54 4.68 11.23 0.00 5.75 0.00 0.00 3.59 28 ER8a ExonRegion 0 2.12 19.66 35.54 15.45 1.78 1.22 2.21 0.00 3.29 6.88 0.00 5.77 4.69 0.00 0.00 1.98 1.10 3.70 0.00 1.42 0.73 0.00 0.98 29 ER8b ExonRegion 0 3.03 49.23 119.04 38.94 2.68 5.70 4.94 0.35 7.21 14.65 0.00 10.91 6.52 0.71 1.04 1.34 0.59 9.11 0.00 7.70 0.02 1.13 4.17 30 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 E8a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER9a ExonRegion 0 1.06 6.43 11.14 8.27 2.05 0.00 1.16 0.31 2.07 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.23 0.00 0.00 0.00 33 E9_Da KnownBoundary 0 7.19 120.83 5.32 60.76 0.00 10.28 0.00 3.74 9.35 6.21 0.00 12.00 19.80 2.41 21.39 0.00 0.00 4.93 21.65 8.37 0.00 0.00 0.00 34 E9a_E10a KnownJunction 0 0.00 14.87 4.91 2.83 0.00 0.00 0.00 0.00 0.00 1.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 ER9b ExonRegion 0 2.00 2.03 4.12 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 E9b_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 ER10a ExonRegion 0 6.40 85.08 133.58 38.48 1.47 3.25 2.99 16.49 7.77 12.42 0.00 9.03 0.40 0.12 0.84 1.63 2.56 4.47 0.00 10.87 0.00 2.29 2.46 38 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 E10a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 Ix_AR1 ActiveIntronRegion 0 0.82 25.15 4.27 6.33 0.00 0.00 1.55 1.00 1.43 0.00 0.00 5.85 1.50 0.00 0.00 0.00 0.00 0.00 0.00 2.48 0.00 0.00 0.00 41 ER11a ExonRegion 0 4.20 16.96 18.14 19.75 2.68 0.93 3.04 0.07 0.63 7.88 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.91 42 E11a_E12a KnownJunction 0 0.00 2.89 2.66 1.60 4.33 0.00 5.70 0.00 0.00 6.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 E11a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 Ix Intron 0 2.06 25.32 9.46 14.76 0.50 1.61 2.08 1.43 1.87 1.90 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.72 0.00 3.05 0.81 0.19 0.41 45 Ix_SR1 SilentIntronRegion 0 2.12 25.56 9.77 15.23 0.51 1.66 2.12 1.48 1.93 1.96 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.71 0.00 3.09 0.84 0.20 0.42 46 Ix_AR1 ActiveIntronRegion 0 0.00 18.68 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.00 1.86 0.00 0.00 0.00 47 E12_Aa NovelBoundary 0 9.63 34.07 35.01 37.56 0.00 0.00 4.50 1.52 10.07 2.39 0.00 37.81 0.00 0.00 0.00 3.93 0.00 4.15 3.58 12.46 0.00 3.12 0.00 48 ER12a ExonRegion 0 11.65 79.51 21.01 30.63 5.12 5.64 5.71 5.30 7.47 12.97 0.00 15.57 2.24 1.16 0.59 1.72 0.96 3.46 2.77 13.75 1.28 0.60 1.70 49 E12_Da NovelBoundary 0 0.00 85.45 32.26 40.62 0.00 0.00 8.66 11.17 9.32 1.56 0.00 0.00 0.00 0.00 0.00 0.00 4.58 4.19 0.00 2.68 0.00 0.00 4.35 50 E12a_E13a KnownJunction 0 0.00 3.35 23.74 12.05 0.00 4.32 8.74 9.16 2.84 14.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 51 Ix Intron 0 1.07 20.54 4.61 7.18 1.35 0.00 0.00 1.30 1.86 1.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 2.15 1.11 0.00 0.00 52 Ix_AR1 ActiveIntronRegion 0 1.09 20.95 4.70 7.32 1.38 0.00 0.00 1.33 1.90 1.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.00 2.19 1.11 0.00 0.00 53 ER13a ExonRegion 0 5.32 45.03 59.94 14.46 0.48 2.77 4.96 8.23 2.68 5.25 0.00 3.28 0.00 0.00 0.09 0.00 0.29 0.72 0.00 6.29 0.00 1.10 0.00 54 ER13b ExonRegion 0 0.00 0.68 2.25 2.73 0.00 3.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00