Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 HMGB1 Gene 0 473.27 583.30 420.06 293.88 613.95 715.40 785.66 365.97 233.50 373.02 577.37 802.10 199.04 676.56 413.31 506.83 583.37 391.79 313.61 426.59 87.51 289.65 148.15 2 405805 Transcript 0 4.68 6.34 5.57 5.99 8.74 15.75 6.63 4.79 5.99 6.15 2.56 14.90 3.68 5.46 2.42 4.04 4.42 3.13 6.32 7.00 5.17 2.15 2.26 3 398908 Transcript 0 0.00 0.04 0.71 0.36 0.46 2.54 0.02 0.03 0.95 1.20 0.16 0.78 0.66 0.10 0.73 0.04 0.13 0.02 0.61 0.06 0.78 0.03 0.50 4 341423 Transcript 0 8.39 8.57 1.66 0.00 0.86 12.25 8.61 0.00 0.93 1.31 8.91 0.00 0.00 10.96 9.84 8.17 7.78 4.16 3.30 4.48 2.28 2.83 0.31 5 326004 Transcript 1 533.06 305.32 134.34 132.95 400.10 246.32 436.28 119.44 89.69 64.33 74.23 296.85 115.04 134.94 137.62 123.34 80.31 46.23 45.98 107.41 14.82 105.89 38.34 6 399487 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 432889 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 468384 Transcript 0 18.69 9.30 37.58 13.99 26.04 21.80 24.41 18.63 15.46 16.81 38.02 36.01 4.17 30.90 23.83 43.24 53.24 34.52 16.37 16.49 2.71 8.12 8.74 9 399494 Transcript 0 2.63 0.01 0.01 2.18 0.78 5.80 0.20 0.01 0.01 0.96 0.37 4.59 0.03 0.02 0.02 0.45 1.04 1.45 0.00 1.61 6.10 2.70 9.38 10 426225 Transcript 0 6.45 5.66 17.83 11.65 4.33 2.61 0.00 4.44 1.71 4.73 5.16 0.00 0.00 0.00 0.00 3.42 16.27 0.00 9.41 8.63 0.00 0.00 7.43 11 339872 Transcript 0 25.34 11.45 39.15 57.80 34.38 27.03 7.68 11.91 12.41 22.91 15.74 0.00 0.00 9.59 9.27 0.00 12.90 6.22 53.65 9.72 11.68 8.08 3.41 12 399489 Transcript 0 194.51 113.73 86.90 82.89 143.89 176.41 56.39 61.87 63.60 38.18 47.12 49.36 29.88 46.76 39.23 44.61 54.27 24.86 53.30 40.49 33.03 47.80 21.87 13 490788 Transcript 0 144.84 156.49 101.22 109.66 221.47 197.26 270.57 100.70 94.78 65.10 106.70 277.08 74.10 168.05 76.56 188.55 127.00 77.11 50.33 106.92 19.15 82.92 73.07 14 ER1a ExonRegion 0 8.28 10.74 5.83 6.90 16.19 41.07 12.24 3.54 12.46 9.16 5.00 28.10 6.07 10.84 5.11 9.50 7.45 7.13 17.35 10.07 14.91 3.56 5.01 15 E1a_E5c KnownJunction 0 0.00 0.00 0.00 1.70 0.00 0.00 0.00 0.00 0.00 2.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER2a ExonRegion 0 0.00 0.08 1.42 0.71 0.92 5.07 0.04 0.07 1.91 2.41 0.32 1.57 1.32 0.20 1.46 0.08 0.27 0.05 1.22 0.11 1.55 0.06 1.01 17 E2a_E5c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER3a ExonRegion 0 8.39 8.57 1.66 0.00 0.86 12.25 8.61 0.00 0.93 1.31 8.91 0.00 0.00 10.96 9.84 8.17 7.78 4.16 3.30 4.48 2.28 2.83 0.31 19 E3_Ac KnownBoundary 0 26.15 23.35 3.61 0.00 0.00 26.06 17.80 0.00 0.00 0.00 15.90 0.00 0.00 12.36 6.30 17.17 13.93 11.77 0.00 9.78 0.00 3.12 4.35 20 E3_Ad KnownBoundary 1 512.16 488.53 78.06 61.26 454.41 1237.13 902.24 22.96 38.17 61.08 458.70 163.55 70.77 1178.18 360.10 557.46 391.68 282.34 330.17 219.88 87.85 77.15 154.76 21 ER3b ExonRegion 0 57.47 55.53 13.38 9.54 38.70 125.40 70.78 1.99 5.99 8.38 69.58 4.33 0.72 161.16 55.12 70.87 55.61 35.25 44.60 34.21 13.56 7.05 16.72 22 ER3c ExonRegion 1 747.13 697.52 106.94 90.07 680.61 1620.08 1134.76 67.72 64.68 106.04 841.69 20.86 37.52 1408.85 589.48 816.79 714.19 545.09 522.11 345.26 147.65 112.51 229.86 23 ER3d ExonRegion 1 3069.94 2601.95 942.52 597.95 3824.01 5855.34 5302.00 815.49 484.96 984.21 3105.46 227.96 130.88 3692.45 1746.09 3912.63 3359.98 3688.31 1943.99 1861.30 534.98 939.58 1163.31 24 E3a_E5c KnownJunction 1 2452.29 1899.99 1581.79 966.84 3093.55 3515.42 3086.22 1494.11 797.71 1543.11 2430.67 779.65 358.09 1541.59 1005.26 3771.23 2754.09 4086.76 1664.42 1922.82 444.24 350.87 1227.44 25 ER4a ExonRegion 0 2.15 0.02 0.02 0.87 1.56 4.50 0.40 0.02 0.02 0.65 0.74 1.99 0.06 0.05 0.03 0.89 2.08 0.34 0.00 0.21 5.96 2.27 1.87 26 E4a_E5c KnownJunction 0 3.11 0.00 0.00 3.50 0.00 7.10 0.00 0.00 0.00 1.26 0.00 7.20 0.00 0.00 0.00 0.00 0.00 2.57 0.00 3.00 6.24 3.12 16.90 27 I4 Intron 0 17.94 27.50 14.21 5.35 17.47 59.44 8.95 11.80 12.23 13.71 15.28 1.63 0.89 16.51 10.27 14.98 18.15 6.95 20.08 16.83 33.57 7.64 8.76 28 I4_AR1 ActiveIntronRegion 0 27.64 42.79 22.51 8.47 27.67 86.47 13.70 18.69 19.36 21.71 23.50 2.59 1.40 26.15 15.89 22.11 26.35 10.34 28.91 26.26 49.56 12.09 13.32 29 E5_Aa NovelBoundary 0 312.72 164.44 124.39 116.57 129.20 238.22 43.19 104.08 78.67 72.18 66.91 25.21 7.63 62.81 88.02 39.65 58.91 52.40 172.90 61.23 135.79 64.97 34.74 30 ER5a ExonRegion 0 174.88 81.06 50.76 38.25 69.49 103.32 28.51 30.38 30.47 38.10 40.08 5.01 7.18 50.04 35.00 29.67 50.18 10.28 56.84 62.43 63.74 57.23 44.92 31 E5_Ab KnownBoundary 0 182.18 103.21 132.49 100.72 95.42 73.20 23.49 87.16 71.53 99.60 69.91 11.70 19.80 55.39 28.06 31.36 51.99 34.82 24.28 68.39 101.50 47.33 47.63 32 ER5b ExonRegion 0 150.75 112.67 130.31 113.43 120.88 190.27 45.95 84.34 76.53 97.05 90.50 25.21 14.90 71.69 29.31 67.19 59.54 29.31 100.08 77.00 127.29 54.62 42.23 33 E5_Da KnownBoundary 0 75.05 89.13 62.98 70.72 122.92 131.97 57.50 44.81 44.21 53.37 28.53 35.56 13.64 11.77 25.09 53.40 21.88 28.73 55.44 35.54 74.07 19.35 37.73 34 E5a_E5c KnownJunction 0 6.45 5.66 17.83 11.65 4.33 2.61 0.00 4.44 1.71 4.73 5.16 0.00 0.00 0.00 0.00 3.42 16.27 0.00 9.41 8.63 0.00 0.00 7.43 35 E5_Db KnownBoundary 0 106.69 48.94 77.44 56.10 37.78 121.24 32.55 61.90 45.40 27.37 21.58 0.00 6.82 15.66 0.00 12.90 32.91 19.32 49.98 29.21 14.76 26.02 4.35 36 E5b_E5c KnownJunction 0 25.34 11.45 39.15 57.80 34.38 27.03 7.68 11.91 12.41 22.91 15.74 0.00 0.00 9.59 9.27 0.00 12.90 6.22 53.65 9.72 11.68 8.08 3.41 37 ER5c ExonRegion 0 158.13 125.21 132.69 133.95 159.78 318.56 79.25 90.37 81.16 93.06 78.97 52.57 34.17 51.74 32.33 66.66 77.81 41.71 155.17 78.42 110.50 80.07 44.47 38 ER5d ExonRegion 0 382.94 209.37 133.54 148.26 247.97 352.83 85.61 115.97 111.84 74.96 94.25 86.11 52.95 85.93 69.07 89.21 108.53 36.63 106.60 74.71 66.06 86.59 43.74 39 E5_Ac KnownBoundary 0 828.59 231.60 152.86 212.43 552.97 565.58 160.88 139.77 85.56 88.94 88.13 163.10 116.23 130.56 102.60 76.99 82.00 16.54 79.53 91.02 37.81 105.38 46.69 40 ER5e ExonRegion 1 580.81 420.40 1804.64 1105.31 629.72 848.80 431.03 1453.77 948.96 1787.25 3570.59 935.93 247.48 3911.57 1800.61 3408.66 3796.62 3378.14 2040.78 2125.24 698.10 1132.94 964.98 41 E5_Dc KnownBoundary 0 7.04 3.29 11.68 2.06 11.12 2.21 11.48 9.36 0.00 1.67 19.16 12.60 0.00 22.43 5.81 7.18 38.80 3.77 4.05 3.00 0.00 5.27 0.00 42 E5c_E5d KnownJunction 1 968.47 512.93 2533.38 1681.90 1377.93 2211.51 826.77 2076.01 1253.00 2177.00 2508.58 592.39 134.41 3247.59 2161.45 5162.06 2337.35 5324.73 2417.39 2345.31 436.83 761.93 1640.85 43 ER5f ExonRegion 0 18.69 9.30 37.58 13.99 26.04 21.80 24.41 18.63 15.46 16.81 38.02 36.01 4.17 30.90 23.83 43.24 53.24 34.52 16.37 16.49 2.71 8.12 8.74 44 E5_Ad KnownBoundary 0 13.26 6.18 26.91 7.39 39.90 2.84 28.44 13.68 11.83 3.92 33.85 24.91 0.00 14.77 8.90 8.03 47.97 0.00 0.00 3.26 0.00 0.00 0.00 45 ER5g ExonRegion 0 1662.86 1258.59 2553.82 1522.01 4341.89 5322.31 2860.82 1989.41 1208.97 2103.14 4183.97 2813.41 667.93 4345.27 2212.10 4763.96 3987.72 5078.65 2554.43 2691.12 685.19 1068.34 1427.71 46 E5_Dd KnownBoundary 0 2104.45 2261.24 2095.93 1275.20 8336.17 9026.56 6224.51 1562.99 917.90 1585.07 5380.05 5683.40 1264.37 7503.83 3751.79 4650.32 5174.09 3154.64 2942.96 3213.18 944.27 1452.34 1366.07 47 ER5h ExonRegion 0 1639.58 2239.75 2101.25 1205.81 4881.99 7014.83 6196.34 1596.32 981.26 1796.88 3365.55 3195.61 585.26 3619.82 1605.07 2430.57 3035.14 3029.56 1606.44 1780.48 585.67 913.51 671.80 48 E5_Ae KnownBoundary 0 2354.86 2812.66 1568.19 951.93 3470.46 7520.33 7954.59 1125.35 734.11 1264.98 499.39 705.98 299.49 153.39 139.07 642.05 446.94 1588.78 190.22 258.16 77.59 114.81 193.35 49 ER5i ExonRegion 0 3014.24 4517.73 1523.69 876.54 2629.80 6284.32 6750.20 1245.33 836.48 1560.05 2185.23 1806.20 579.88 1739.80 772.01 1136.14 2376.40 1633.52 698.86 1258.97 457.00 491.83 327.41 50 E5f_E6a KnownJunction 0 5182.84 6762.74 2118.35 1241.90 3816.56 3526.49 5208.51 1616.22 1065.15 1908.92 4834.28 5760.38 2123.89 5243.65 2708.09 3096.45 5308.64 2254.19 1603.25 2583.15 1076.47 1101.65 799.08 51 ER5j ExonRegion 0 3993.34 5639.11 1884.93 1126.08 2817.56 3290.29 4441.89 1466.16 1019.90 1835.05 4314.23 4870.65 1599.30 4491.50 2128.79 2474.29 4630.33 2200.67 1311.57 2331.91 931.62 874.04 677.63 52 ER6a ExonRegion 0 3515.95 4641.74 1268.98 727.40 1346.89 1949.68 2761.54 916.57 610.94 1067.96 1832.68 2302.48 537.72 2385.06 1017.97 1435.90 2088.34 1605.77 829.46 1165.95 430.50 539.29 364.85 53 E6_Da KnownBoundary 0 24.75 24.67 7.07 30.00 37.61 19.93 15.85 12.03 10.97 10.61 18.16 6.30 0.00 7.18 5.56 11.79 8.13 9.66 0.00 9.20 8.71 5.45 15.88 54 E6a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 ER6b ExonRegion 1 1251.73 1511.13 566.84 340.68 1842.57 2020.41 2825.14 363.23 249.71 272.52 537.46 2162.57 434.66 1168.60 874.22 1270.85 757.65 734.48 577.21 946.93 150.24 407.27 312.93 56 E6_Db KnownBoundary 0 209.00 192.01 68.51 48.51 132.51 92.33 169.19 72.50 81.28 49.45 78.23 199.26 62.98 135.09 22.25 119.28 146.52 49.79 36.33 79.39 12.29 59.34 49.85 57 E6b_E7a KnownJunction 0 3.48 23.55 23.54 8.89 0.00 9.54 27.91 6.98 18.63 9.00 0.00 6.30 6.33 7.48 0.00 4.36 0.00 0.00 0.00 8.44 0.00 6.25 0.00 58 E6b_E7b KnownJunction 0 2568.16 2725.96 1479.78 799.00 1776.91 1953.70 2509.06 886.99 581.71 923.08 1667.21 2915.15 468.31 2063.35 944.44 2149.18 2095.84 1254.50 1136.88 2501.40 402.05 914.52 517.22 59 ER6c ExonRegion 0 164.34 167.41 114.41 122.76 267.53 272.50 337.41 118.65 111.46 72.52 118.23 283.41 63.06 207.94 84.18 278.47 150.88 106.26 70.42 123.14 30.11 100.52 113.26 60 ER6d ExonRegion 0 172.50 186.07 130.50 169.00 309.05 354.84 375.34 129.63 113.63 68.24 131.44 240.29 63.32 184.34 60.93 248.17 140.29 103.47 76.45 105.32 22.04 120.84 98.38 61 ER6e ExonRegion 1 125.33 145.57 88.03 96.55 175.40 122.01 203.74 82.74 78.10 57.68 95.16 270.75 85.13 128.16 68.93 98.63 103.12 47.97 30.25 90.71 8.20 65.32 32.87 62 E6_Dd NovelBoundary 1 261.31 302.64 157.74 266.20 303.99 148.66 336.39 196.79 148.64 92.19 129.19 308.80 91.07 215.38 111.50 427.07 168.40 75.98 122.45 118.37 19.58 201.83 154.51 63 I6 Intron 0 243.74 239.80 112.69 118.15 201.64 135.29 250.99 101.52 67.32 66.15 67.34 281.78 102.95 115.10 81.52 61.62 83.26 21.06 29.38 66.58 8.68 87.36 29.17 64 I6_AR1 ActiveIntronRegion 0 244.49 240.54 113.04 118.51 202.25 135.71 251.76 101.83 67.53 66.35 67.54 282.64 103.27 115.45 81.76 61.81 83.52 21.13 29.47 66.79 8.71 87.62 29.26 65 E7_Aa NovelBoundary 1 761.47 328.30 175.25 124.59 262.90 103.92 336.74 153.62 95.75 85.82 64.17 304.90 210.86 98.01 130.66 84.76 81.91 29.02 43.86 68.65 6.18 110.16 32.69 66 ER7a ExonRegion 1 461.19 244.40 97.00 92.79 169.96 83.73 232.30 73.46 61.11 49.73 51.45 208.42 70.26 115.57 62.26 59.62 71.56 20.10 33.06 55.96 9.26 60.76 21.97 67 E7_Da KnownBoundary 1 836.30 438.61 158.36 182.23 271.99 192.11 425.86 152.06 109.20 87.84 67.81 244.73 130.35 140.44 142.53 119.71 73.77 25.29 66.64 97.99 8.22 107.34 55.49 68 E7a_E7b KnownJunction 0 6.08 18.09 40.27 17.51 39.81 0.00 27.16 7.76 15.36 1.40 0.00 12.60 6.82 7.59 9.39 0.00 0.00 13.10 0.00 6.26 0.00 9.00 0.00 69 ER7b ExonRegion 1 533.06 305.32 134.34 132.95 400.10 246.32 436.28 119.44 89.69 64.33 74.23 296.85 115.04 134.94 137.62 123.34 80.31 46.23 45.98 107.41 14.82 105.89 38.34 70 E7_Ab KnownBoundary 1 698.72 441.83 166.85 141.87 523.01 313.23 522.27 116.16 70.83 50.80 120.35 449.55 205.67 192.66 201.25 218.92 118.37 37.06 73.51 133.20 26.87 140.35 59.67 71 ER7c ExonRegion 1 1187.82 1199.59 1318.73 917.37 1997.92 2143.17 3112.49 772.76 380.45 419.40 933.07 5596.13 979.58 2994.44 2737.68 2873.89 1197.60 1239.04 1709.85 2178.43 132.58 1576.27 803.05 72 E7_Db KnownBoundary 1 1241.03 1281.55 1157.03 843.12 1839.56 1901.63 3124.25 714.15 391.66 510.97 1214.31 4027.31 778.20 2019.96 1966.88 3014.34 1501.92 1051.42 1882.41 2209.17 163.28 1539.72 815.39 73 E7_Dc KnownBoundary 0 514.76 837.94 1486.58 875.38 921.73 703.34 929.71 827.07 507.26 812.31 945.45 723.99 227.26 520.75 344.15 614.45 991.77 338.88 341.28 767.77 119.54 346.40 178.15 74 ER7d ExonRegion 1 1121.05 1690.92 2139.40 1389.23 1957.09 1985.09 2903.45 1290.87 641.02 884.36 1986.86 5728.24 1193.61 3100.31 2582.12 2970.64 2362.89 1321.91 1949.44 2569.14 251.04 1824.64 864.11 75 ER7e ExonRegion 0 1555.09 2606.80 1994.38 1436.78 2890.10 2406.66 3550.09 1910.94 1067.67 1888.85 2523.78 5123.83 1087.70 2749.45 2133.51 1727.45 2322.59 774.96 1172.21 1994.10 182.86 1589.11 483.31 76 E7_Dd KnownBoundary 1 456.67 553.19 441.38 402.25 1091.51 1064.67 1278.82 580.99 358.27 538.34 504.29 1689.10 217.84 365.12 294.46 312.99 586.25 128.38 311.73 456.18 69.07 496.79 182.59 77 ER7f ExonRegion 1 500.73 779.84 736.82 610.00 1133.70 1242.37 1351.98 816.30 605.23 720.26 691.01 2021.44 678.54 812.22 488.21 487.24 571.43 260.71 326.19 567.84 40.13 620.62 160.76 78 E7_De KnownBoundary 1 1272.45 1209.78 835.78 652.03 2033.02 1667.85 2367.39 1066.82 650.49 853.19 736.82 2177.21 927.37 1026.73 706.97 673.58 683.12 278.19 437.94 866.33 46.70 877.78 191.55 79 E7_Df KnownBoundary 1 261.08 406.31 568.64 418.30 812.65 825.26 860.20 606.17 437.29 450.29 309.55 1321.33 815.69 471.66 279.00 352.90 324.08 154.12 165.84 413.16 11.86 406.77 128.64 80 ER7g ExonRegion 1 512.73 834.28 932.30 772.53 1525.62 1412.03 1643.48 1060.55 807.87 877.00 707.28 2492.33 1315.94 1137.15 657.62 581.30 653.03 352.15 347.74 764.54 36.36 727.32 207.52 81 ER7h ExonRegion 0 201.69 208.70 243.46 190.58 266.84 328.97 327.80 211.52 171.74 195.41 151.74 438.32 175.64 257.36 156.54 111.78 168.43 55.48 83.53 156.07 9.44 146.32 38.39 82 E7_Dg KnownBoundary 0 0.00 9.01 14.58 5.56 19.44 2.61 0.00 1.93 1.48 2.77 0.00 16.96 19.97 0.00 0.00 0.00 0.00 1.58 0.00 2.49 0.00 0.00 0.00 83 ER7i ExonRegion 0 5.77 8.27 10.88 9.39 10.03 6.19 7.64 10.83 5.53 6.94 2.68 16.60 4.98 5.55 2.14 2.61 5.80 2.26 1.62 10.92 0.61 2.89 1.77 84 IG31_AR7 ActiveIntergenicRegion 0 32.99 22.56 13.70 16.45 38.22 30.81 20.23 13.91 9.39 9.74 8.03 35.60 18.51 31.77 13.67 19.88 29.53 20.99 7.55 25.63 3.19 19.87 10.36 85 IG31_AR6 ActiveIntergenicRegion 0 67.60 47.79 42.29 44.22 70.15 45.32 41.59 37.81 40.84 20.90 11.53 57.69 19.45 49.93 23.63 33.11 45.09 22.65 16.86 48.48 6.74 23.25 11.80 86 IG31_SR5 SilentIntergenicRegion 0 12.27 12.65 7.83 11.48 14.34 9.07 8.15 6.44 11.53 4.96 1.89 13.02 21.33 28.75 15.95 27.28 19.65 5.79 5.30 8.02 0.82 3.73 1.47 87 IG31_AR5 ActiveIntergenicRegion 0 8.65 0.33 0.59 0.65 6.89 0.30 0.85 0.41 0.35 1.37 0.00 59.15 168.50 112.51 89.28 122.87 65.53 0.59 0.00 0.00 0.00 0.00 0.47 88 IG31_SR4 SilentIntergenicRegion 0 3.60 0.52 1.86 0.52 3.64 0.16 1.69 0.22 0.63 0.29 0.16 14.83 38.09 50.56 22.56 50.03 18.80 0.00 0.27 0.00 0.00 0.53 0.25 89 IG31_AR4 ActiveIntergenicRegion 0 6.13 0.00 1.87 1.48 3.03 0.38 0.57 0.00 0.29 0.26 0.20 12.18 51.44 117.15 67.90 139.76 100.30 0.00 0.00 0.00 1.13 0.21 0.00