Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C13orf3 Gene 0 21.99 137.66 22.74 14.30 40.05 27.60 49.45 32.04 8.14 47.19 92.37 144.12 83.67 100.10 54.35 81.81 82.17 54.98 18.72 60.38 1.84 13.14 3.71 2 314759 Transcript 0 0.00 2.91 0.00 0.00 4.71 4.98 3.66 0.00 0.00 0.00 6.35 0.00 0.00 4.33 5.11 0.71 2.99 0.53 0.00 0.00 0.31 1.09 0.00 3 465471 Transcript 0 1.84 2.66 2.35 1.27 0.00 9.46 0.88 0.32 0.00 6.07 18.20 0.00 4.69 12.32 8.80 13.61 13.69 15.30 12.40 23.38 0.94 3.14 0.00 4 462482 Transcript 0 0.00 0.00 4.41 0.00 0.00 0.00 0.00 2.26 0.00 9.13 17.48 0.00 0.00 4.94 0.00 3.25 12.62 18.57 19.20 6.26 0.00 0.00 0.00 5 298260 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36.54 5.85 0.00 7.71 4.45 8.12 34.13 0.00 0.00 0.00 0.00 0.00 0.00 6 400018 Transcript 0 0.00 18.22 2.66 0.00 0.00 7.78 23.36 8.63 1.36 17.89 18.64 60.92 0.00 12.13 21.51 31.53 38.90 9.41 4.80 42.19 0.00 0.00 0.00 7 475251 Transcript 0 1.33 6.36 0.00 2.01 0.00 2.46 8.40 1.68 0.00 1.97 3.81 5.75 1.21 1.97 1.45 2.17 3.68 0.79 2.32 5.20 0.00 0.00 0.00 8 ER1a ExonRegion 0 0.00 2.91 0.00 0.00 4.71 4.98 3.66 0.00 0.00 0.00 6.35 0.00 0.00 4.33 5.11 0.71 2.99 0.53 0.00 0.00 0.31 1.09 0.00 9 ER1b ExonRegion 0 0.00 8.13 0.00 0.00 8.03 9.17 7.94 0.00 0.00 0.00 9.66 0.00 0.00 10.83 8.70 5.94 19.81 1.85 0.00 0.00 2.20 2.08 0.00 10 ER1c ExonRegion 0 0.00 8.13 0.00 0.00 8.03 9.17 7.94 0.00 0.00 0.00 9.66 0.00 0.00 11.37 8.70 5.94 19.81 1.85 0.00 0.00 2.20 2.08 0.00 11 ER1d ExonRegion 1 28.12 81.26 12.44 3.44 70.91 85.45 91.30 18.69 8.48 26.58 140.68 16.21 7.99 88.84 69.55 143.02 126.64 153.16 46.96 82.14 7.03 14.42 8.10 12 E1_Ae KnownBoundary 0 15.71 99.52 19.10 4.56 20.46 49.97 81.57 29.82 11.28 43.68 79.60 11.70 7.30 23.96 14.71 62.04 81.16 203.33 48.47 42.89 4.70 11.21 0.00 13 ER1e ExonRegion 1 18.72 23.10 10.55 1.43 9.67 16.47 24.80 18.77 4.13 24.65 108.60 2.96 7.08 46.67 18.06 25.57 95.15 55.73 14.79 39.25 3.69 5.51 0.03 14 E1_Da NovelBoundary 0 7.48 0.00 6.50 1.63 3.82 6.87 2.16 1.60 1.79 7.25 26.95 0.00 13.47 9.54 8.90 8.54 34.60 12.52 0.00 27.61 3.15 2.33 0.00 15 E1a_E2a KnownJunction 1 7.56 8.02 3.25 3.30 3.57 0.00 0.00 24.15 9.37 29.20 179.41 0.00 18.83 73.34 45.37 34.69 192.24 42.95 0.00 80.73 11.12 7.53 0.00 16 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36.54 5.85 0.00 7.71 4.45 8.12 34.13 0.00 0.00 0.00 0.00 0.00 0.00 17 E1a_E8a KnownJunction 0 0.00 0.00 4.41 0.00 0.00 0.00 0.00 2.26 0.00 9.13 17.48 0.00 0.00 4.94 0.00 3.25 12.62 18.57 19.20 6.26 0.00 0.00 0.00 18 E1_Db NovelBoundary 0 0.00 0.00 3.13 0.00 4.24 5.62 3.75 2.42 0.00 0.00 10.74 5.70 0.00 19.84 17.92 11.19 17.02 18.28 4.33 3.20 0.00 0.00 0.00 19 E1b_E2a KnownJunction 0 0.00 3.35 1.83 1.63 0.00 10.56 0.00 0.00 0.00 6.66 17.43 0.00 0.00 12.13 8.90 15.55 12.34 18.28 17.13 22.88 0.00 3.12 0.00 20 ER1f ExonRegion 0 3.68 1.96 2.86 0.91 0.00 8.35 1.77 0.64 0.00 5.48 18.97 0.00 9.38 12.51 8.70 11.67 15.04 12.32 7.67 23.88 1.88 3.16 0.00 21 I1_SR1 SilentIntronRegion 0 2.12 7.49 2.17 1.86 3.53 1.44 7.64 3.23 0.54 3.54 10.10 21.76 18.46 16.26 7.03 12.38 11.90 6.78 1.17 14.19 0.00 0.61 0.00 22 ER2a ExonRegion 0 10.92 23.12 12.12 6.20 20.84 4.41 15.72 29.30 11.20 41.97 138.36 51.88 50.38 169.67 96.68 147.60 96.90 117.84 41.67 97.70 2.84 22.31 8.38 23 E2a_E3a KnownJunction 1 23.93 41.31 15.76 7.06 23.26 8.18 31.27 32.41 14.50 52.41 68.12 112.09 69.80 123.96 104.70 198.49 39.27 167.80 60.80 108.66 0.00 22.47 16.30 24 E2a_E4a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 4.74 0.00 0.00 3.00 0.00 7.69 3.55 15.01 9.04 6.52 0.00 0.00 0.00 25 ER3a ExonRegion 0 20.44 75.81 23.16 13.18 88.35 94.78 126.18 39.37 14.40 68.70 176.24 259.32 144.97 136.62 73.27 145.94 104.87 122.86 24.35 100.86 1.34 21.29 4.65 26 E3_Da KnownBoundary 0 0.00 6.05 0.00 5.23 0.00 0.00 2.25 0.00 0.00 3.89 10.16 0.00 6.82 0.00 0.00 0.00 8.04 4.39 0.00 6.20 0.00 0.00 0.00 27 E3a_E4a KnownJunction 0 33.34 109.32 37.76 18.65 30.73 36.06 53.92 51.01 22.45 95.39 206.32 414.44 315.24 220.32 123.74 335.89 230.95 165.73 72.47 143.81 0.00 28.41 24.76 28 ER3b ExonRegion 0 1.33 6.36 0.00 2.01 0.00 2.46 8.40 1.68 0.00 1.97 3.81 5.75 1.21 1.97 1.45 2.17 3.68 0.79 2.32 5.20 0.00 0.00 0.00 29 ER4a ExonRegion 0 40.09 468.18 34.79 22.29 37.89 30.51 52.74 53.63 14.95 82.62 204.18 338.90 191.15 228.55 107.40 176.77 155.43 78.23 32.82 110.58 4.09 26.53 7.04 30 E4_Da NovelBoundary 0 3.78 56.17 1.63 1.50 11.12 0.00 3.44 2.55 0.00 3.57 12.27 25.06 6.17 4.83 13.60 0.00 3.83 0.00 0.00 2.75 0.00 3.06 0.00 31 E4a_E5a KnownJunction 0 27.19 608.12 37.58 21.38 72.16 35.32 75.96 44.77 14.15 94.98 110.08 265.74 113.63 164.87 64.53 64.94 108.74 26.32 27.20 81.17 2.59 11.39 4.35 32 I4_SR4 SilentIntronRegion 0 3.32 1.03 4.96 2.13 2.15 0.66 14.87 5.95 0.33 6.67 4.53 23.17 18.40 10.99 3.17 11.34 4.42 6.23 0.56 10.55 0.00 1.25 0.62 33 E5_Aa NovelBoundary 1 2.74 22.17 3.67 5.29 16.30 0.00 10.38 6.45 0.00 11.77 2.68 11.55 13.31 21.43 8.90 48.45 0.00 11.94 0.00 12.08 0.00 2.51 0.00 34 ER5a ExonRegion 0 54.76 492.34 35.18 16.67 75.51 39.66 76.19 51.35 11.17 98.51 192.44 234.40 186.07 191.80 90.01 118.47 152.84 63.92 25.19 127.11 3.10 26.60 8.33 35 E5a_E6a KnownJunction 0 44.16 354.67 34.06 32.16 47.45 24.53 41.65 53.44 7.47 80.40 168.04 219.67 134.73 194.89 105.20 124.92 179.34 72.09 18.54 141.19 3.09 14.27 16.73 36 E6_Aa NovelBoundary 0 3.78 0.00 14.96 13.65 4.33 0.00 33.96 3.66 1.27 13.05 6.79 50.42 28.57 7.18 4.45 3.50 9.54 8.21 0.00 20.20 0.00 0.00 0.00 37 ER6a ExonRegion 0 29.63 197.73 33.91 36.40 54.60 27.46 77.34 58.29 14.02 105.22 174.66 261.38 130.99 193.59 104.95 137.03 192.14 75.82 24.45 115.04 1.61 20.79 9.60 38 E6a_E7a KnownJunction 0 27.41 167.93 49.61 23.81 67.40 28.00 86.78 69.13 14.67 128.88 202.84 224.47 119.64 219.67 156.99 122.70 224.03 52.15 24.75 93.57 5.75 31.72 12.55 39 ER7a ExonRegion 0 45.71 172.71 59.78 39.25 105.85 63.61 112.51 84.76 16.72 124.82 186.60 325.90 212.66 203.36 117.83 137.43 197.75 103.74 35.62 127.42 3.42 29.17 10.03 40 E7a_E8a KnownJunction 0 27.49 129.78 87.28 43.35 91.51 37.25 128.12 73.73 27.14 109.54 153.09 378.42 163.30 206.61 180.73 221.65 183.17 96.71 64.94 125.73 2.47 37.11 8.71 41 E7a_E9a KnownJunction 0 0.00 18.22 2.66 0.00 0.00 7.78 23.36 8.63 1.36 17.89 18.64 60.92 0.00 12.13 21.51 31.53 38.90 9.41 4.80 42.19 0.00 0.00 0.00 42 E8_Aa NovelBoundary 0 0.00 2.63 0.00 3.03 0.00 0.00 6.27 7.56 0.00 2.36 0.00 0.00 13.31 0.00 0.00 0.00 0.00 4.44 0.00 5.82 2.78 9.31 0.00 43 ER8a ExonRegion 0 49.82 180.08 71.38 37.45 130.62 45.32 101.82 74.21 16.63 96.42 200.65 336.39 198.79 233.91 129.24 201.31 206.24 135.58 63.79 110.39 5.28 30.06 5.55 44 E8a_E9a KnownJunction 0 44.60 198.58 64.28 41.45 121.73 29.13 79.27 85.80 13.28 93.48 172.46 284.94 144.15 176.29 127.70 135.43 175.13 83.03 54.50 90.06 4.70 25.11 4.27 45 ER9a ExonRegion 0 33.84 154.68 41.84 28.46 65.65 44.76 86.54 56.52 13.86 71.15 82.72 200.64 105.44 121.37 77.03 109.43 91.62 81.53 24.92 89.10 1.63 17.70 4.50 46 E9_Da KnownBoundary 0 11.04 159.45 1.74 1.60 34.30 27.09 66.02 4.52 0.00 1.07 2.16 5.55 5.68 2.77 5.19 3.93 4.77 11.32 4.71 3.00 0.00 0.00 0.00 47 ER9b ExonRegion 0 2.78 8.07 1.18 0.38 3.19 0.80 5.87 0.56 0.17 1.26 0.63 1.98 0.00 1.91 1.15 0.69 1.99 0.60 0.00 0.49 0.00 0.00 0.00