Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 N4BP2L2 Gene 0 61.17 52.46 38.74 41.39 57.57 67.99 38.85 18.90 60.70 23.74 14.76 75.18 73.33 15.20 30.74 16.06 10.55 15.17 7.73 35.39 24.59 36.49 15.82 2 399396 Transcript 0 12.29 10.89 7.53 12.44 10.16 11.25 9.84 7.19 13.65 9.14 6.53 11.99 20.06 5.51 5.40 3.44 2.65 4.31 4.86 9.42 14.22 8.94 6.87 3 473025 Transcript 0 41.19 8.98 15.03 15.35 15.20 40.03 26.98 5.73 40.34 5.37 13.11 59.42 90.25 11.68 26.33 12.01 17.77 6.72 1.79 20.65 21.34 33.56 16.18 4 380121 Transcript 0 2.90 3.70 2.44 3.59 2.85 3.20 4.86 1.10 5.40 2.20 1.43 5.17 5.09 0.90 1.36 0.72 1.16 1.46 1.25 3.45 1.90 1.39 0.11 5 357505 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ER1a ExonRegion 0 10.68 2.40 0.00 0.00 5.23 3.75 3.19 0.00 1.12 0.00 2.02 0.00 0.00 7.09 0.00 2.43 2.70 1.68 0.00 0.00 6.01 1.80 0.00 7 ER2a ExonRegion 0 19.14 6.38 5.46 3.84 10.46 7.17 7.04 5.03 4.77 4.12 6.94 1.97 2.35 8.56 2.24 7.03 4.20 3.02 1.16 3.29 12.02 5.59 5.61 8 Ix Intron 0 107.66 99.64 70.19 146.21 109.70 64.52 84.44 82.37 80.03 68.20 17.55 178.85 139.64 32.83 44.14 43.58 37.68 20.51 33.69 62.28 18.48 67.48 69.79 9 Ix_AR7 ActiveIntronRegion 0 69.66 96.51 53.70 135.33 86.18 54.58 92.81 60.04 73.87 56.43 14.16 191.84 150.48 32.49 39.45 34.90 33.43 16.94 25.34 63.69 16.21 54.85 64.74 10 Ix_SR3 SilentIntronRegion 0 122.62 125.63 73.55 134.19 108.22 56.90 84.39 72.85 67.36 56.82 18.12 159.49 106.97 25.92 40.75 46.65 41.86 22.69 36.64 57.83 23.76 54.40 67.14 11 Ix_AR6 ActiveIntronRegion 0 189.29 101.04 89.90 168.73 151.81 79.08 83.64 121.09 92.75 99.46 15.62 168.71 167.21 34.39 50.90 48.63 30.27 21.02 36.14 49.40 17.20 97.53 65.06 12 Ix_AR2 ActiveIntronRegion 0 103.61 88.71 84.87 174.94 126.66 81.96 80.05 105.01 99.99 83.66 23.16 205.77 161.06 40.07 51.46 50.31 45.04 23.44 41.16 75.58 17.66 87.34 85.15 13 Ix_SR1 SilentIntronRegion 0 94.07 38.19 16.34 47.55 65.70 40.75 33.69 26.70 17.29 25.10 3.22 50.51 23.45 7.94 33.85 37.65 1.10 6.57 28.67 17.49 2.69 25.47 30.67 14 Ix_AR1 ActiveIntronRegion 0 121.52 45.22 44.51 96.04 97.54 52.19 67.36 81.58 64.69 61.77 13.60 102.20 87.69 35.85 44.52 41.37 25.85 17.99 30.78 44.64 14.46 54.59 55.56 15 ER3a ExonRegion 0 19.75 11.17 24.38 27.29 14.73 12.52 14.26 23.55 22.36 17.80 10.64 8.95 13.44 1.99 7.08 7.53 2.42 6.55 12.57 13.84 15.10 10.89 11.63 16 E3_Da NovelBoundary 1 594.77 552.07 232.10 493.64 342.70 531.51 377.81 272.07 205.38 276.68 247.96 628.10 415.72 262.29 274.43 252.93 301.36 106.78 155.96 229.21 121.21 301.82 201.71 17 E3a_E4a KnownJunction 0 0.00 11.84 1.66 21.51 12.65 2.50 6.18 12.36 14.76 12.14 11.21 0.00 18.83 0.00 4.45 0.00 0.00 1.99 23.25 12.21 35.15 3.12 12.38 18 Ix Intron 0 221.87 125.56 91.32 197.10 197.98 166.15 149.87 150.27 130.44 117.50 66.54 353.59 316.65 111.40 99.51 110.83 75.54 37.71 54.11 83.16 29.60 165.88 99.34 19 Ix_AR5 ActiveIntronRegion 0 355.90 160.84 131.93 183.89 219.55 92.85 123.80 170.42 108.49 127.27 42.86 319.96 270.14 72.94 71.77 59.86 55.51 18.06 37.08 60.16 14.24 93.17 58.62 20 Ix_SR4 SilentIntronRegion 0 25.05 30.78 9.46 23.87 56.32 51.88 70.50 15.10 14.14 14.85 23.23 131.15 82.19 61.67 42.66 41.45 38.08 10.63 28.41 35.26 13.78 44.87 41.94 21 Ix_AR4 ActiveIntronRegion 0 139.76 74.66 35.89 92.81 219.21 166.65 166.72 83.93 78.10 65.03 45.49 232.70 184.83 89.91 70.34 91.75 55.57 35.61 35.84 55.08 25.61 84.25 85.03 22 Ix_SR3 SilentIntronRegion 0 435.40 124.92 62.32 130.84 308.48 208.79 241.72 101.98 75.52 81.27 64.34 326.57 229.14 116.70 117.29 130.77 109.40 52.53 82.82 80.85 56.04 142.57 101.52 23 Ix_AR3 ActiveIntronRegion 0 166.46 83.21 41.74 75.30 209.15 177.27 126.25 69.35 45.96 46.31 49.09 259.86 160.34 110.37 72.83 94.86 81.56 22.10 54.68 54.79 57.11 82.39 70.30 24 Ix_AR2 ActiveIntronRegion 0 168.39 90.64 93.82 236.87 200.91 194.81 169.94 184.14 176.37 158.39 81.65 470.80 417.77 135.04 108.60 143.71 96.97 46.55 71.49 100.73 29.56 225.14 127.18 25 Ix_AR1 ActiveIntronRegion 0 335.23 206.77 127.87 270.86 235.37 207.28 167.19 187.83 158.85 133.71 85.13 381.32 376.27 129.70 135.03 130.51 82.56 47.94 59.16 104.32 41.22 211.29 115.46 26 ER4a ExonRegion 0 25.11 20.31 9.93 19.29 8.60 11.89 11.41 11.28 16.53 16.40 7.64 12.06 21.29 2.17 2.05 1.50 1.45 4.51 7.37 4.61 10.82 14.35 7.89 27 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 Ix Intron 0 267.89 77.75 44.16 99.02 155.81 154.22 100.93 81.58 62.16 58.84 40.39 165.52 126.67 100.00 115.66 94.14 47.28 40.00 36.00 57.05 19.69 105.42 81.84 29 Ix_AR1 ActiveIntronRegion 0 269.24 78.15 44.39 99.52 156.61 155.01 101.44 81.99 62.49 59.15 40.60 166.33 127.31 100.51 116.25 94.62 47.52 40.21 36.19 57.34 19.79 105.96 82.24 30 ER5a ExonRegion 0 17.45 17.77 5.17 16.69 5.53 28.96 12.86 3.17 20.72 14.92 5.10 23.84 32.34 5.72 12.77 7.84 3.39 5.54 0.50 8.76 2.58 12.56 6.86 31 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER6a ExonRegion 0 9.22 16.24 15.97 20.96 25.07 28.82 25.31 6.81 25.03 11.43 9.41 60.20 70.13 16.72 15.72 8.10 7.54 6.16 3.72 30.22 17.76 27.83 8.11 33 E6_Ab KnownBoundary 1 359.62 643.31 111.03 301.26 522.41 831.85 643.58 145.48 94.62 128.62 143.19 471.15 183.10 156.57 316.46 107.75 100.98 39.26 35.20 131.73 62.46 154.12 143.67 34 ER6b ExonRegion 0 27.88 24.02 17.12 27.45 23.15 35.51 31.84 7.22 39.41 11.98 13.65 44.94 62.16 19.77 23.76 11.37 12.68 19.36 4.60 29.96 44.28 27.25 12.82 35 E6a_E7a KnownJunction 0 34.60 3.16 6.18 17.58 11.97 48.89 27.65 5.67 41.61 4.89 6.69 76.22 71.59 11.65 22.99 16.32 26.83 7.21 0.00 17.45 16.99 32.70 13.91 36 E6a_E10a NovelJunction 0 10.82 0.00 2.90 0.00 0.00 5.74 0.00 0.00 0.00 0.00 2.16 0.00 6.66 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 E6a_E11a KnownJunction 0 21.49 22.76 12.74 14.78 19.35 16.87 18.15 9.65 31.25 14.59 12.37 12.90 42.21 12.83 9.64 0.00 4.77 13.64 0.00 21.22 42.75 13.23 16.22 38 Ix Intron 0 25.10 50.94 18.59 58.93 55.51 44.81 52.55 24.40 23.41 24.55 4.91 52.97 35.00 7.95 12.91 12.54 7.25 8.12 14.47 32.74 4.03 20.86 13.91 39 Ix_AR3 ActiveIntronRegion 0 24.62 39.50 19.33 57.75 57.41 43.26 74.39 23.79 27.68 25.21 7.02 62.45 50.13 9.05 18.17 14.11 11.72 4.62 21.22 41.25 2.28 24.86 12.90 40 Ix_SR2 SilentIntronRegion 0 18.69 51.67 16.98 49.56 41.05 38.48 40.26 14.67 18.69 18.92 4.82 44.96 30.39 7.42 11.71 15.22 6.50 9.78 14.35 32.18 3.52 16.97 17.51 41 Ix_AR2 ActiveIntronRegion 0 35.43 71.55 17.48 59.53 59.57 46.09 41.02 29.14 25.53 26.16 4.49 41.26 21.26 9.55 13.72 13.55 6.85 13.97 16.17 29.86 11.55 20.70 13.77 42 Ix_SR1 SilentIntronRegion 0 37.82 77.08 26.71 86.20 94.92 58.65 68.76 39.03 29.11 37.29 0.83 95.20 41.39 9.62 9.28 10.35 1.17 3.45 8.87 31.35 3.17 32.34 9.80 43 Ix_AR1 ActiveIntronRegion 0 25.33 41.55 18.55 64.88 60.58 50.28 52.74 31.59 23.64 27.30 4.65 50.47 34.20 6.48 10.80 7.74 6.47 7.06 9.75 28.43 2.52 19.74 11.16 44 Ix_AR3 ActiveIntronRegion 0 6.38 15.45 23.78 16.41 18.71 6.19 10.85 5.90 14.20 4.34 1.63 7.74 12.27 1.28 7.04 9.32 6.77 8.97 4.99 14.64 3.18 1.51 6.73 45 Ix_AR17 ActiveIntronRegion 0 4.23 5.23 12.25 16.94 69.19 8.91 100.81 6.91 7.23 5.73 0.00 16.08 23.45 3.25 20.31 5.94 14.62 5.54 0.91 17.02 4.09 2.08 9.65 46 E7_Aa NovelBoundary 0 3.56 18.88 16.17 9.02 0.00 0.00 23.45 4.15 21.24 8.30 0.00 0.00 27.43 0.00 0.00 4.27 8.98 2.57 7.91 0.00 2.97 0.00 7.26 47 ER7a ExonRegion 0 41.18 11.57 16.70 13.09 12.10 28.23 29.07 3.46 36.69 6.38 18.24 64.13 83.64 17.12 30.28 10.84 11.21 8.43 3.38 23.76 19.24 32.21 19.52 48 E7_Da NovelBoundary 0 0.00 6.18 8.28 8.52 3.14 0.00 22.88 4.19 11.17 7.49 0.00 6.15 20.45 0.00 0.00 3.50 0.00 0.00 0.00 14.13 2.78 0.00 8.54 49 E7a_E8a KnownJunction 0 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 0.00 50 E7a_E10a NovelJunction 0 0.00 0.00 0.00 2.06 0.00 2.90 4.50 0.00 0.00 0.00 0.00 18.16 6.82 12.13 4.45 3.25 0.00 0.00 0.00 0.00 3.15 8.39 12.72 51 E7a_E11a KnownJunction 1 47.79 14.80 23.89 13.12 18.42 31.18 26.32 5.79 39.06 5.86 19.53 42.61 108.92 11.71 29.67 7.69 8.70 6.22 3.58 23.84 25.70 34.41 18.44 52 E8_Aa NovelBoundary 0 0.00 10.00 3.19 17.41 0.00 2.78 22.35 10.60 12.96 6.88 0.00 44.41 28.41 0.00 0.00 3.85 0.00 1.70 4.80 16.43 0.00 0.00 3.50 53 ER8a ExonRegion 0 0.00 0.00 0.94 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.46 0.00 0.00 0.00 54 E8_Da NovelBoundary 0 3.48 12.89 5.82 10.42 7.72 0.00 4.11 3.94 22.66 16.90 0.00 23.86 12.82 0.00 5.93 0.00 4.77 0.00 0.00 6.07 3.03 0.00 4.35 55 E8a_E9a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 4.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 E9_Aa NovelBoundary 0 6.67 12.76 4.88 15.88 4.33 0.00 20.89 0.00 17.01 5.32 0.00 36.31 0.00 2.88 6.06 8.72 0.00 6.88 4.71 15.28 10.93 3.12 0.00 57 ER9a ExonRegion 0 2.16 2.57 0.87 3.56 1.68 2.89 5.58 0.81 2.33 2.15 0.67 2.35 8.77 1.35 1.29 0.00 0.00 0.38 1.81 2.01 1.39 1.31 0.00 58 E9_Da NovelBoundary 0 0.00 12.96 3.08 4.13 3.40 7.27 3.97 4.68 16.81 7.41 2.68 5.55 46.75 4.83 5.19 7.01 7.76 6.76 8.47 26.08 11.92 0.00 4.35 59 E9a_E10a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 6.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 3.86 0.00 0.00 0.00 0.00 60 E10_Aa NovelBoundary 0 0.00 2.43 4.20 7.82 4.33 0.00 17.05 2.09 7.26 8.73 2.53 6.15 6.82 0.00 4.45 0.00 0.00 5.43 0.00 21.60 2.47 2.63 0.00 61 ER10a ExonRegion 0 11.48 7.78 2.03 4.11 1.92 7.16 7.32 0.00 3.88 3.69 5.86 17.25 20.81 2.54 2.58 2.14 6.34 3.29 0.50 6.58 8.30 1.66 0.00 62 E10_Ab KnownBoundary 0 14.15 12.17 5.29 8.76 3.74 5.79 21.60 0.00 7.20 7.25 2.11 25.06 35.87 2.47 6.30 8.54 4.77 0.00 0.00 11.63 20.39 0.00 0.00 63 ER10b ExonRegion 0 6.24 13.85 8.58 5.97 6.60 1.96 7.97 0.18 6.09 6.41 1.87 15.30 30.81 2.13 1.50 9.43 2.39 2.90 0.00 13.68 8.97 2.26 0.66 64 E10_Da NovelBoundary 0 0.00 2.70 1.21 6.33 0.00 10.79 2.03 1.89 15.28 3.01 2.58 0.00 21.91 0.00 0.00 3.93 0.00 9.33 0.00 21.35 3.15 19.04 3.50 65 E10a_E11a KnownJunction 0 3.48 12.63 12.21 6.66 7.98 0.00 5.83 0.00 3.10 5.51 0.00 6.00 5.68 2.30 0.00 4.36 4.02 5.93 0.00 0.00 5.62 0.00 3.76 66 ER11a ExonRegion 0 86.74 86.33 53.78 69.71 87.17 106.46 54.95 25.15 102.37 31.14 24.67 117.25 142.39 33.66 39.68 33.51 27.64 26.73 11.87 61.04 58.72 61.47 29.84 67 E11_Da KnownBoundary 0 62.60 86.17 66.32 55.50 31.49 134.81 78.04 24.56 110.47 30.22 14.74 132.04 198.53 41.32 43.88 23.16 18.14 19.03 9.22 59.32 51.28 64.05 41.32 68 ER11b ExonRegion 0 95.11 81.29 65.00 65.68 97.44 111.79 61.48 31.31 95.72 38.13 23.52 125.26 118.60 23.26 52.18 25.83 16.25 24.16 11.89 56.69 37.37 60.10 25.90 69 E11b_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70 ER12a ExonRegion 0 87.32 58.83 6.91 7.37 24.30 71.41 32.65 3.10 11.04 2.71 0.65 23.91 9.43 4.82 10.73 5.98 0.00 6.34 5.22 2.10 1.41 7.34 4.71 71 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72 ER13a ExonRegion 0 67.96 31.86 1.96 4.06 15.58 55.67 30.19 0.00 5.76 0.00 0.00 1.54 0.00 1.84 2.39 0.00 0.00 0.29 0.00 2.36 0.00 5.23 0.00 73 E13a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74 ER14a ExonRegion 0 51.58 33.38 10.87 15.04 11.77 9.93 9.66 2.45 20.82 4.72 0.98 8.76 2.68 3.28 6.45 0.73 0.95 2.96 0.90 8.68 3.10 4.04 0.83 75 E14_Da KnownBoundary 0 27.86 19.01 15.88 20.38 15.20 11.19 12.10 6.04 22.42 4.73 0.00 12.15 13.64 8.89 4.45 3.25 0.00 2.11 0.00 5.43 4.88 18.06 0.00 76 ER14b ExonRegion 0 6.65 15.53 11.41 13.80 16.32 12.37 8.75 6.86 31.61 9.56 3.46 16.56 6.05 2.42 5.63 2.88 1.78 4.20 2.59 10.86 3.59 6.77 0.80