Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZMYM5 Gene 0 55.44 82.68 55.55 76.57 92.91 72.99 76.54 67.08 61.39 32.98 55.51 114.18 94.81 47.40 46.37 59.41 51.10 35.72 34.92 58.60 26.87 53.17 37.55 2 337963 Transcript 1 15.47 7.34 1.65 2.94 10.73 9.32 15.08 0.37 4.80 1.19 13.02 0.00 0.00 20.60 6.32 26.93 14.49 7.42 4.90 12.09 12.34 3.69 8.08 3 495534 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 382905 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 467542 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 439841 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 382907 Transcript 0 4.06 9.49 0.20 4.77 1.34 0.76 4.96 3.89 3.71 0.57 2.26 2.53 3.52 5.14 1.69 1.49 0.00 0.00 1.86 3.90 0.00 0.87 1.47 8 382909 Transcript 0 0.00 0.00 0.00 0.00 6.69 4.58 0.00 0.00 0.00 0.00 0.00 0.00 7.04 0.81 1.45 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 9 ER1a ExonRegion 0 15.47 7.34 1.65 2.94 10.73 9.32 15.08 0.37 4.80 1.19 13.02 0.00 0.00 20.60 6.32 26.93 14.49 7.42 4.90 12.09 12.34 3.69 8.08 10 E1_Ab KnownBoundary 0 6.96 10.06 1.51 1.93 24.45 2.73 17.40 2.34 3.07 1.67 12.42 0.00 0.00 16.83 4.45 12.56 8.88 13.93 4.42 6.39 8.40 9.06 8.54 11 E1_Ac KnownBoundary 0 24.37 25.98 9.99 10.62 11.88 34.64 33.52 2.55 14.26 10.64 14.69 0.00 0.00 7.42 11.13 31.62 22.25 13.68 17.69 29.85 18.47 8.45 20.74 12 ER1b ExonRegion 0 13.89 19.70 8.81 8.09 20.40 24.99 32.52 3.13 15.67 6.95 21.14 0.00 0.00 16.65 10.88 28.98 17.74 15.36 18.32 24.73 17.35 13.54 21.66 13 ER1c ExonRegion 1 44.63 64.90 14.05 26.36 85.30 126.97 111.58 19.13 29.51 13.57 75.92 6.64 39.78 35.03 21.36 102.59 84.57 60.98 72.55 74.61 72.87 31.18 83.90 14 E1_Da NovelBoundary 0 0.00 0.00 0.00 3.60 0.00 0.00 0.00 2.22 6.25 13.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.54 0.00 0.00 0.00 2.33 6.49 15 E1a_E2a KnownJunction 0 12.74 23.09 16.56 42.52 49.32 42.36 30.69 38.90 42.53 14.83 46.91 0.00 18.99 28.67 15.95 45.80 74.61 105.71 30.87 22.18 57.39 12.37 37.22 16 E1a_E3a NovelJunction 0 3.48 6.58 6.89 9.82 21.31 4.54 10.78 7.64 3.53 4.78 2.11 0.00 0.00 2.24 4.45 3.33 0.00 4.35 8.28 7.73 11.74 2.45 0.00 17 E2_Aa NovelBoundary 0 3.48 2.76 10.02 5.26 24.45 2.16 11.00 8.67 6.66 0.00 12.06 12.60 6.82 7.06 5.44 12.90 7.67 5.72 8.28 23.39 8.90 3.12 0.00 18 ER2a ExonRegion 1 14.97 17.11 18.80 26.22 25.58 52.16 31.35 33.02 42.79 15.64 63.73 10.57 24.69 39.31 18.13 54.46 68.93 61.46 35.32 41.68 35.71 26.01 24.70 19 E2_Da NovelBoundary 0 0.00 2.70 9.46 5.09 0.00 0.00 7.68 0.00 5.30 2.47 0.00 0.00 0.00 2.24 0.00 3.85 0.00 2.16 12.61 3.26 0.00 0.00 15.19 20 E2a_E3a KnownJunction 0 6.74 14.73 23.68 26.17 26.57 27.48 25.04 32.37 49.19 24.20 94.18 17.56 32.30 33.73 25.09 50.07 79.10 31.50 20.14 36.69 28.97 20.57 27.49 21 ER3a ExonRegion 0 55.22 86.89 68.12 77.94 100.01 95.75 91.23 82.20 78.69 40.66 115.29 151.27 145.06 61.64 48.67 82.92 97.40 49.97 50.91 86.18 40.42 69.24 41.31 22 E3_Ab KnownBoundary 0 128.02 162.54 99.02 101.92 176.32 181.20 186.54 110.20 108.04 42.42 107.29 206.77 277.42 66.81 46.60 111.08 73.77 42.45 55.44 67.94 32.37 77.64 50.28 23 ER3b ExonRegion 0 67.25 144.75 100.15 84.40 133.59 103.58 130.92 95.39 101.01 39.91 107.66 300.03 258.87 85.46 45.47 92.02 87.15 48.37 43.73 83.44 35.05 88.56 51.08 24 E3_Da KnownBoundary 0 9.63 29.53 38.38 48.71 51.10 22.26 24.82 36.72 43.98 14.83 30.17 50.87 47.72 2.47 0.00 16.83 14.03 13.39 17.13 52.92 3.15 10.65 25.69 25 E3a_E3c KnownJunction 0 34.45 128.46 57.92 49.11 78.44 34.41 70.97 75.12 51.65 25.25 74.97 217.27 199.18 91.06 55.88 113.39 53.48 50.86 41.04 48.39 34.41 87.44 65.30 26 E3a_E6a NovelJunction 0 0.00 5.85 3.67 1.30 0.00 0.00 3.53 2.09 2.78 4.46 2.47 18.91 0.00 0.00 0.00 3.93 0.00 6.22 0.00 8.50 0.00 0.00 0.00 27 ER3c ExonRegion 0 24.08 29.77 52.70 47.93 57.90 42.37 49.61 36.28 56.73 17.67 24.21 67.53 49.92 12.77 18.47 31.36 24.93 14.63 18.16 40.72 2.83 29.76 17.12 28 E3_Ac KnownBoundary 0 13.34 31.51 41.01 31.86 38.29 43.61 71.32 29.16 52.23 12.17 17.16 62.57 33.44 11.42 22.99 24.61 19.73 6.59 9.22 38.03 6.30 36.56 16.39 29 ER3d ExonRegion 0 45.49 85.32 64.08 77.39 86.89 67.77 86.97 73.21 86.26 32.01 137.40 233.51 210.19 81.07 62.77 89.93 87.46 51.06 56.03 72.66 48.15 76.42 60.37 30 E3_Db NovelBoundary 0 7.04 16.84 19.04 7.26 0.00 0.00 7.42 12.65 14.64 0.99 10.58 55.67 6.82 0.00 13.35 22.90 0.00 5.14 9.60 11.44 0.00 0.00 16.22 31 E3b_E4a KnownJunction 0 14.30 62.62 30.01 64.23 92.95 63.32 73.66 65.23 58.56 18.16 64.91 171.66 128.73 55.21 29.92 80.49 58.91 45.68 30.78 18.54 38.55 30.43 42.51 32 E3b_E5a KnownJunction 0 3.78 8.95 11.80 3.36 0.00 5.45 0.00 6.70 3.15 2.74 9.84 36.46 20.45 14.19 8.90 0.00 8.04 0.00 8.85 0.00 0.00 8.57 4.35 33 E3b_E6a NovelJunction 0 0.00 8.75 11.56 14.38 29.37 2.90 15.02 6.70 4.72 6.18 16.79 26.71 6.49 13.07 0.00 0.00 13.28 6.96 4.80 13.93 2.90 3.12 4.10 34 I3 Intron 0 13.24 13.52 7.91 10.99 16.48 7.05 12.17 10.07 7.86 3.52 2.96 12.34 18.62 3.14 8.91 12.20 6.78 3.15 8.30 12.27 1.36 4.35 5.55 35 I3_SR1 SilentIntronRegion 0 13.25 13.53 7.92 11.00 16.49 7.05 12.18 10.08 7.86 3.52 2.96 12.35 18.63 3.14 8.92 12.21 6.78 3.15 8.31 12.28 1.37 4.35 5.55 36 I3 Intron 0 14.86 15.34 6.63 12.49 18.41 10.51 14.29 8.64 7.84 2.14 4.05 11.33 16.76 3.73 9.40 10.90 5.53 5.14 5.90 10.85 2.69 4.00 5.54 37 I3_AR1 ActiveIntronRegion 0 8.83 8.96 6.37 14.05 18.82 12.76 13.54 14.96 8.08 3.57 2.58 10.34 19.96 4.56 12.18 12.34 5.35 5.32 2.94 13.65 3.42 2.45 7.13 38 I3_SR2 SilentIntronRegion 0 19.78 19.38 5.52 12.66 16.09 9.26 11.98 7.12 7.26 2.16 2.51 13.22 14.87 3.01 8.27 9.73 4.56 3.64 5.60 8.10 1.43 3.24 4.25 39 I3_AR2 ActiveIntronRegion 0 15.54 19.24 11.61 13.34 27.40 12.40 22.51 6.95 12.80 1.95 10.83 9.00 22.81 5.22 9.26 18.37 9.57 11.73 11.69 15.62 7.24 9.26 10.78 40 E4_Aa NovelBoundary 1 58.23 9.01 22.97 27.77 69.52 12.49 15.37 4.31 14.44 4.57 7.16 0.00 54.70 7.00 4.45 15.30 17.39 11.07 9.51 18.02 18.10 6.00 18.95 41 ER4a ExonRegion 0 85.31 98.44 52.29 105.47 120.40 111.98 98.89 78.32 71.17 26.08 90.27 159.12 150.69 67.71 50.51 124.60 81.29 65.69 58.75 67.24 58.26 61.83 70.17 42 E4_Da NovelBoundary 0 23.12 24.80 30.40 34.29 47.71 31.86 24.16 29.45 18.66 6.74 14.11 12.60 21.75 7.36 17.80 28.11 17.20 20.06 22.87 17.77 2.84 13.72 34.57 43 E4a_E5a KnownJunction 0 33.04 65.12 23.74 23.41 72.50 39.07 31.75 32.86 33.94 11.07 29.43 55.97 46.43 21.48 31.03 20.08 35.16 2.40 4.80 9.20 11.00 27.19 29.96 44 E4a_E6a NovelJunction 0 0.00 15.13 13.36 17.45 12.31 2.50 13.73 1.89 9.90 1.67 5.00 24.91 0.00 2.47 4.45 10.85 9.35 0.00 0.00 12.59 9.14 2.57 0.00 45 I4 Intron 0 16.95 13.28 13.83 18.74 22.36 19.79 17.28 18.61 12.01 5.50 10.94 17.45 21.30 11.53 16.34 35.95 11.20 11.36 16.08 17.78 7.29 12.70 16.10 46 I4_AR1 ActiveIntronRegion 1 26.75 13.13 18.27 25.34 29.53 24.07 21.39 26.78 17.32 7.91 20.40 26.20 32.09 14.87 23.31 65.14 16.87 20.30 29.17 27.40 13.93 18.47 29.04 47 I4_SR1 SilentIntronRegion 0 21.19 8.33 6.41 11.34 17.34 23.17 11.13 10.09 6.63 2.40 7.95 17.03 15.11 11.31 18.05 40.84 11.05 9.15 20.55 14.69 7.01 7.51 17.03 48 E5_Aa NovelBoundary 0 17.41 36.84 17.53 28.37 20.12 29.19 20.05 13.92 4.37 4.84 4.37 12.60 20.29 7.65 4.45 16.24 7.39 2.36 0.00 11.12 0.00 13.72 0.00 49 ER5a ExonRegion 0 63.75 73.99 45.60 75.57 96.99 61.61 60.43 67.44 53.71 22.20 54.61 129.96 134.15 41.42 53.69 39.10 52.66 8.31 15.08 28.79 11.56 61.05 29.51 50 E5_Da KnownBoundary 1 28.97 54.00 23.77 65.49 52.46 17.32 50.61 41.77 38.22 2.95 30.96 99.63 20.45 13.89 17.80 16.24 13.18 3.61 13.74 32.60 5.07 51.50 15.54 51 E5a_E6a KnownJunction 0 28.23 33.74 8.43 29.87 45.08 35.38 37.32 35.82 32.61 16.65 16.95 76.67 57.14 23.31 25.47 19.48 30.01 5.60 9.60 5.88 3.15 15.37 3.07 52 ER5b ExonRegion 0 17.59 36.06 22.15 40.33 33.73 15.75 30.71 32.57 26.72 6.65 19.24 72.60 53.04 15.51 24.62 9.71 10.94 2.93 8.22 17.43 2.71 32.09 9.98 53 E5_Db NovelBoundary 0 30.89 36.64 5.97 21.84 24.45 51.33 17.14 21.52 17.94 7.66 7.21 23.11 28.73 23.84 17.80 15.55 9.54 4.60 0.00 21.03 2.90 9.25 15.02 54 E5_Dc NovelBoundary 0 43.04 30.39 8.63 20.78 40.75 49.46 29.32 25.63 10.13 4.27 12.53 27.46 13.15 4.71 16.19 11.19 9.54 8.87 8.09 12.08 5.81 9.06 23.39 55 ER5c ExonRegion 0 4.06 9.49 0.20 4.77 1.34 0.76 4.96 3.89 3.71 0.57 2.26 2.53 3.52 5.14 1.69 1.49 0.00 0.00 1.86 3.90 0.00 0.87 1.47 56 I5 Intron 0 22.35 22.73 12.97 23.95 36.86 31.70 27.88 21.15 14.89 6.86 13.13 27.43 31.48 12.32 16.13 17.43 12.02 9.95 11.80 22.20 5.17 15.44 11.60 57 I5_SR1 SilentIntronRegion 0 22.08 33.75 5.64 15.69 20.76 12.75 17.90 12.94 7.11 1.98 5.97 28.34 23.98 9.41 12.53 11.46 6.38 4.62 12.31 12.31 7.65 16.90 5.67 58 I5_AR1 ActiveIntronRegion 0 26.26 23.52 18.91 33.73 48.01 41.36 37.63 29.16 19.13 9.28 18.46 36.45 40.20 14.57 19.73 20.14 16.91 12.91 15.41 27.03 6.07 16.27 15.87 59 I5_AR2 ActiveIntronRegion 0 10.05 14.24 3.98 18.06 21.41 23.38 17.21 5.62 11.12 7.17 5.80 17.32 23.45 10.15 11.24 17.83 13.20 12.01 9.56 11.70 4.41 10.16 14.32 60 I5_AR3 ActiveIntronRegion 0 11.11 12.71 4.90 21.47 18.06 21.78 15.23 6.91 12.04 9.18 7.25 19.48 29.31 14.01 13.42 17.46 10.32 12.93 9.56 8.24 4.41 8.59 12.85 61 I5_AR4 ActiveIntronRegion 0 10.58 11.96 5.19 21.97 15.42 28.26 15.73 10.98 14.02 10.12 6.48 21.14 38.07 17.29 14.51 18.88 6.41 11.09 8.81 10.26 2.85 6.37 8.12 62 I5_AR5 ActiveIntronRegion 0 14.05 18.67 4.90 18.34 18.49 27.01 20.10 14.61 16.39 10.32 8.79 21.65 38.80 21.56 8.70 18.37 6.60 9.24 5.21 14.70 4.41 8.33 5.87 63 I5_AR6 ActiveIntronRegion 0 22.22 34.57 4.20 12.07 40.14 30.26 27.61 13.83 12.17 6.80 12.98 18.86 35.18 16.71 11.40 14.86 9.90 5.41 2.96 18.24 4.41 14.58 8.18 64 I5_AR7 ActiveIntronRegion 0 23.28 32.54 2.45 10.90 40.14 22.31 27.80 12.68 8.03 5.16 10.95 21.65 34.39 11.37 14.51 10.40 7.15 3.70 3.19 14.89 2.20 14.58 5.87 65 I5_AR8 ActiveIntronRegion 0 18.18 27.27 1.37 7.86 34.31 17.58 22.12 8.64 6.68 2.63 7.73 18.34 20.69 2.96 9.22 6.64 6.60 1.85 3.19 11.89 0.65 11.52 5.87 66 I5_SR2 SilentIntronRegion 0 18.34 22.37 0.00 9.09 16.05 23.23 17.65 5.76 7.41 1.53 3.87 8.66 9.38 0.54 0.00 0.00 0.00 0.00 0.00 4.96 0.00 4.17 1.96 67 I5_SR3 SilentIntronRegion 0 14.95 9.84 8.16 7.56 23.91 24.56 11.34 11.51 11.65 3.82 6.48 3.98 11.09 7.82 12.20 17.68 4.92 7.88 4.74 23.76 1.64 15.51 6.56 68 E6_Aa NovelBoundary 0 34.08 20.26 15.26 46.08 31.83 54.51 51.18 25.75 39.06 10.18 20.06 12.00 26.95 12.18 13.35 29.39 18.51 4.35 9.60 38.73 0.00 7.84 8.54 69 ER6a ExonRegion 0 56.58 97.18 46.53 85.36 100.16 73.00 75.86 56.15 61.36 38.86 54.58 102.61 110.91 40.79 42.95 48.49 49.67 27.37 25.81 65.52 17.99 45.71 26.77 70 E6_Da NovelBoundary 0 16.37 20.79 17.59 32.76 12.14 17.15 13.73 13.51 22.48 5.24 8.63 12.00 22.08 4.89 5.19 20.59 0.00 9.49 8.47 27.16 5.37 5.76 0.00 71 E6a_E7a KnownJunction 0 73.12 90.44 50.86 64.43 81.32 118.57 77.77 64.61 65.19 38.55 47.49 143.60 104.54 41.79 60.57 46.65 36.19 28.89 30.02 51.13 5.75 35.45 25.44 72 ER7a ExonRegion 0 63.24 95.81 63.30 87.52 104.20 75.58 81.56 77.37 63.60 41.15 39.78 108.53 75.50 49.44 55.48 53.97 40.88 36.58 35.05 61.51 24.90 56.17 38.54 73 ER7b ExonRegion 0 0.00 0.00 0.00 0.00 6.69 4.58 0.00 0.00 0.00 0.00 0.00 0.00 7.04 0.81 1.45 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 74 IG57 Intergenic 0 15.05 29.54 11.62 32.54 38.39 26.07 23.19 24.55 15.27 13.65 1.64 9.69 10.81 3.88 7.85 12.40 2.55 9.64 9.60 17.10 1.25 1.61 5.37 75 IG57_SR1 SilentIntergenicRegion 0 12.18 24.39 10.51 29.27 37.03 25.82 23.58 18.96 14.10 10.35 1.52 9.58 11.51 3.74 7.78 12.69 2.40 9.83 9.45 17.65 1.33 1.58 5.34 76 IG57_AR1 ActiveIntergenicRegion 0 31.57 59.26 18.06 51.43 46.42 27.67 21.13 56.75 22.03 32.61 2.35 10.34 6.89 4.76 8.26 10.83 3.44 8.62 10.50 14.02 0.76 1.81 5.60