Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TNFRSF19 Gene 0 17.24 74.28 52.04 18.25 30.60 18.33 32.29 32.24 13.19 23.63 8.87 82.08 155.63 1.01 0.77 123.29 42.23 108.85 31.46 50.94 153.78 118.13 39.69 2 248484 Transcript 1 3.27 15.13 10.60 0.69 9.91 4.51 5.91 13.00 5.65 2.86 0.00 2.30 11.43 0.00 0.00 28.33 0.78 60.98 14.05 36.89 33.76 38.81 21.53 3 403372 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 464735 Transcript 0 0.29 1.15 0.71 0.48 0.37 0.63 1.42 0.00 0.62 0.53 0.44 4.66 3.12 0.75 0.60 2.74 2.46 1.27 0.73 4.00 3.12 1.20 1.91 5 382258 Transcript 1 0.00 5.16 0.81 0.70 3.45 4.34 2.99 1.26 1.89 2.09 2.43 16.13 19.45 0.13 0.00 21.96 7.98 11.89 0.43 7.61 27.61 16.47 8.87 6 382263 Transcript 0 39.12 130.81 105.54 32.91 51.19 25.12 50.33 52.78 17.49 32.35 7.65 100.43 171.18 0.79 1.47 127.66 37.16 72.36 37.03 51.83 102.41 141.22 37.19 7 ER1a ExonRegion 1 3.27 15.13 10.60 0.69 9.91 4.51 5.91 13.00 5.65 2.86 0.00 2.30 11.43 0.00 0.00 28.33 0.78 60.98 14.05 36.89 33.76 38.81 21.53 8 E1_Ab KnownBoundary 0 6.59 5.26 20.37 2.06 7.64 12.49 5.87 31.01 4.02 4.16 0.00 30.91 6.82 0.00 0.00 20.85 0.00 47.75 8.47 39.25 85.19 39.43 10.84 9 ER1b ExonRegion 1 2.40 18.09 19.88 3.19 9.15 5.00 11.08 12.47 3.62 7.52 0.00 21.96 49.25 0.00 0.00 32.91 0.00 95.75 20.13 46.45 42.03 50.66 25.33 10 E1a_E4a KnownJunction 1 6.15 28.28 13.51 5.89 8.15 13.12 3.84 9.16 3.36 12.49 0.00 24.46 61.52 0.00 0.00 22.22 0.00 116.94 20.42 47.81 26.81 51.31 4.35 11 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER2b ExonRegion 0 0.00 0.00 0.00 0.00 1.20 1.56 0.33 0.00 0.00 0.00 3.09 0.00 0.00 0.00 2.61 5.50 2.81 3.42 0.00 0.00 25.01 4.79 7.05 13 ER2c ExonRegion 0 0.00 0.00 0.71 0.28 1.67 7.32 4.03 0.87 0.02 2.26 3.10 4.42 3.15 0.46 0.35 24.40 15.57 8.00 0.00 1.11 56.16 15.30 15.25 14 E2a_E3a KnownJunction 0 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 2.43 2.90 0.00 0.00 15 E2a_E4a KnownJunction 0 0.00 0.00 4.35 1.83 0.00 0.00 0.00 0.00 1.79 2.74 2.68 18.46 13.15 0.00 0.00 14.44 26.27 8.21 0.00 5.18 86.80 8.08 11.61 16 E2a_E7a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.16 0.00 0.00 17 ER3a ExonRegion 0 0.00 4.68 2.75 1.04 0.00 0.14 2.31 0.00 0.03 0.59 0.00 7.22 15.32 0.00 0.00 4.89 0.88 0.45 0.00 4.78 7.17 1.25 2.09 18 E3a_E4a KnownJunction 0 0.00 0.00 1.51 0.00 0.00 2.16 0.00 0.00 0.00 1.67 0.00 17.56 0.00 0.00 0.00 3.42 0.00 2.11 0.00 9.20 3.15 4.84 7.77 19 ER4a ExonRegion 0 5.32 28.25 22.04 8.51 8.24 17.38 10.76 17.54 7.43 22.04 2.89 71.50 87.61 1.32 1.01 112.77 36.60 116.35 24.40 66.74 138.34 95.44 45.87 20 E4a_E5a KnownJunction 0 3.63 31.31 17.33 14.05 22.16 12.72 11.88 17.17 8.71 20.23 4.79 85.53 209.56 0.00 0.00 62.80 17.67 128.46 22.31 69.29 148.27 57.31 72.39 21 ER5a ExonRegion 0 4.94 10.63 18.89 13.41 7.95 8.34 19.84 12.04 7.58 24.38 9.04 85.34 128.32 2.09 0.00 114.17 59.71 160.24 37.82 70.65 231.61 94.85 50.80 22 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E5a_E7a KnownJunction 0 10.30 3.03 19.81 12.62 0.00 18.97 14.57 16.02 2.58 19.58 16.95 122.89 161.84 4.77 0.00 109.12 46.66 216.64 44.80 75.55 328.35 83.03 31.50 24 E6_Aa NovelBoundary 0 3.56 12.50 24.45 47.75 0.00 0.00 14.18 46.82 26.68 24.55 0.00 0.00 0.00 0.00 0.00 7.52 4.11 44.06 4.05 8.50 8.53 0.00 0.00 25 ER6a ExonRegion 0 1.75 2.22 0.00 0.56 2.21 1.51 6.18 0.00 2.03 0.94 2.66 3.16 3.42 4.49 3.62 8.16 9.08 5.06 4.37 7.57 5.47 1.13 1.60 26 ER7a ExonRegion 0 2.10 14.10 17.59 12.36 6.88 12.51 14.16 13.06 6.35 22.38 14.92 59.23 116.20 1.97 0.00 150.33 56.43 226.86 41.20 66.49 346.28 98.95 50.53 27 E7a_E8a KnownJunction 0 0.00 15.85 18.18 11.62 23.51 16.52 15.15 13.18 12.70 10.66 10.27 58.82 116.71 7.42 0.00 158.76 81.16 219.41 34.26 59.63 350.65 91.91 32.27 28 ER8a ExonRegion 1 0.07 19.63 15.64 8.67 3.14 8.72 9.07 11.32 8.78 16.82 10.99 30.86 122.76 1.74 0.00 173.83 54.62 259.76 25.33 57.89 289.10 95.36 49.31 29 E8a_E9a KnownJunction 0 0.00 30.46 20.70 9.56 0.00 2.90 13.29 10.88 5.12 15.96 7.95 50.27 146.91 0.00 0.00 133.21 52.17 220.86 22.40 63.92 266.75 60.68 52.41 30 ER9a ExonRegion 1 3.07 7.94 14.00 3.58 8.56 6.48 9.40 5.53 6.21 12.63 9.86 30.73 66.88 0.75 0.63 111.54 44.21 156.94 15.21 57.77 240.02 66.84 37.84 31 E9a_E10a KnownJunction 1 10.82 15.06 20.99 1.27 18.17 9.88 8.44 5.54 7.52 22.75 7.21 43.81 61.52 2.30 0.00 143.21 40.95 162.79 12.89 44.29 222.15 47.27 72.22 32 ER10a ExonRegion 1 2.79 11.60 15.54 4.20 13.27 15.06 13.70 12.06 9.72 14.47 7.30 29.79 49.58 0.10 0.00 85.27 38.43 139.83 13.32 46.76 181.67 51.46 35.01 33 E10a_E11a KnownJunction 0 0.00 15.26 23.95 3.13 3.99 5.68 7.82 7.02 9.43 14.00 11.95 36.31 26.95 0.00 0.00 81.77 35.06 139.86 12.61 61.55 214.86 28.72 32.52 34 ER11a ExonRegion 1 3.10 13.94 16.27 3.32 4.83 7.92 9.40 13.63 8.91 15.64 7.99 18.28 40.39 0.57 1.01 93.61 39.64 124.59 21.43 47.26 218.77 43.92 31.22 35 E11_Da NovelBoundary 1 0.00 0.00 1.71 0.00 0.00 0.00 0.00 2.55 1.65 0.00 0.00 0.00 13.31 0.00 0.00 50.93 0.00 57.83 0.00 3.26 22.18 11.82 3.16 36 E11a_E12a KnownJunction 1 0.00 18.75 13.19 8.36 7.13 2.38 14.31 8.34 12.59 14.61 13.42 52.22 66.07 0.00 0.00 85.36 35.81 129.71 32.47 65.32 243.46 73.17 31.24 37 E11a_E13a NovelJunction 1 0.00 0.00 6.95 0.00 0.00 0.00 1.99 2.55 0.00 0.00 0.00 12.45 20.13 0.00 0.00 33.24 8.88 35.44 0.00 0.00 17.98 0.00 0.00 38 I11 Intron 0 1.42 2.21 1.22 0.68 2.91 2.30 2.77 2.37 2.77 0.72 0.32 21.88 46.25 0.14 0.00 7.47 4.15 7.24 0.00 5.35 10.70 9.60 2.95 39 I11_SR1 SilentIntronRegion 0 1.42 2.22 1.23 0.68 2.92 2.31 2.78 2.38 2.78 0.72 0.32 21.95 46.40 0.14 0.00 7.49 4.16 7.27 0.00 5.36 10.73 9.63 2.96 40 E12_Aa NovelBoundary 0 0.00 5.20 1.15 1.40 3.65 2.90 0.00 4.85 1.36 2.69 0.00 31.21 67.37 0.00 0.00 24.44 4.39 16.71 0.00 11.57 36.88 8.57 7.51 41 ER12a ExonRegion 0 4.80 22.30 28.20 7.06 18.32 16.53 22.05 17.84 11.38 16.30 9.94 75.70 166.53 0.45 0.00 157.89 56.49 172.27 30.11 55.82 245.64 104.89 52.32 42 E12_Da KnownBoundary 0 0.00 8.95 1.71 0.00 0.00 0.00 4.50 0.00 2.69 1.67 2.68 12.60 13.64 4.71 0.00 15.81 8.79 8.62 8.47 5.82 28.91 11.63 0.00 43 E12a_E13a KnownJunction 0 0.00 11.77 27.56 0.00 14.86 16.24 17.36 16.06 9.58 19.74 4.63 91.23 237.48 0.00 0.00 146.29 48.81 134.47 37.74 49.09 253.16 87.93 50.62 44 E12_Db KnownBoundary 0 0.00 9.08 0.00 0.00 3.57 0.00 18.15 2.55 0.00 1.67 2.53 30.61 12.66 0.00 0.00 28.62 0.00 21.72 0.00 2.88 34.10 25.66 12.29 45 ER12b ExonRegion 0 0.00 11.15 1.23 0.00 1.09 0.88 11.82 1.73 0.00 2.29 3.01 21.49 14.76 3.25 0.00 24.99 9.17 18.00 6.37 5.83 34.44 16.82 6.53 46 ER12c ExonRegion 0 0.00 5.16 0.81 0.70 3.45 4.34 2.99 1.26 1.89 2.09 2.43 16.13 19.45 0.13 0.00 21.96 7.98 11.89 0.43 7.61 27.61 16.47 8.87 47 I12 Intron 0 1.89 8.99 2.16 1.91 7.05 3.69 5.31 6.16 2.82 2.87 0.91 27.06 51.51 0.17 0.00 22.96 5.05 16.74 2.89 7.06 20.62 19.63 6.76 48 I12_SR2 SilentIntronRegion 0 1.44 6.55 0.58 0.86 2.76 4.16 5.06 3.33 3.03 0.79 0.53 15.16 23.35 0.00 0.00 27.37 1.57 32.49 8.11 8.28 40.77 19.61 7.65 49 I12_AR2 ActiveIntronRegion 0 1.46 9.97 2.86 1.11 7.72 3.25 5.56 5.76 2.48 3.14 1.53 26.30 56.26 0.15 0.00 28.02 5.50 21.89 3.58 8.46 24.23 20.89 6.46 50 I12_SR3 SilentIntronRegion 0 0.76 22.82 1.91 3.22 14.79 2.04 7.83 13.18 3.88 2.52 0.00 18.28 39.80 0.00 0.00 10.98 4.17 8.08 3.19 9.31 6.76 28.82 8.89 51 I12_AR3 ActiveIntronRegion 0 1.81 9.72 3.12 3.01 6.01 5.48 6.15 8.38 4.59 5.04 0.45 40.33 61.42 0.21 0.00 19.61 5.09 14.09 1.03 7.55 18.07 22.01 9.62 52 I12_SR4 SilentIntronRegion 0 7.44 13.31 2.30 2.61 15.26 7.27 7.96 13.32 4.13 3.91 0.31 38.92 87.59 0.47 0.00 17.95 5.29 8.63 3.48 4.67 8.27 22.56 3.00 53 E13_Aa NovelBoundary 0 9.41 32.10 7.13 4.13 26.74 5.00 27.12 8.83 3.12 4.08 0.00 60.92 66.23 0.00 0.00 38.96 7.57 40.21 8.47 12.14 66.10 23.57 4.01 54 ER13a ExonRegion 0 22.80 125.15 68.61 28.01 49.04 28.13 51.00 50.68 21.17 36.56 14.66 141.74 278.67 1.28 0.70 185.69 66.30 135.92 47.21 65.51 208.02 193.99 54.83 55 E13_Da KnownBoundary 0 39.78 125.57 87.22 21.34 39.64 37.76 71.76 35.32 18.14 33.34 9.48 96.18 166.06 0.00 0.00 126.63 52.45 33.87 17.69 65.96 74.07 197.48 63.17 56 ER13b ExonRegion 0 39.12 130.81 105.54 32.91 51.19 25.12 50.33 52.78 17.49 32.35 7.65 100.43 171.18 0.79 1.47 127.66 37.16 72.36 37.03 51.83 102.41 141.22 37.19