Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PSPC1 Gene 0 90.90 141.53 105.88 98.94 122.62 184.21 166.07 137.61 110.39 95.74 257.70 193.37 143.01 271.89 197.94 203.01 227.45 235.21 136.13 187.49 112.33 99.79 106.19 2 427943 Transcript 0 1.78 2.28 0.01 1.48 3.70 4.15 4.34 0.85 0.50 0.56 16.53 0.00 1.64 5.99 6.80 14.97 3.41 6.63 3.95 1.81 6.81 0.00 5.51 3 335781 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 492741 Transcript 0 96.62 180.61 64.01 73.40 162.98 159.25 92.51 80.21 69.36 49.73 67.50 57.31 45.02 43.41 54.94 33.90 53.64 21.75 53.60 54.46 28.36 38.29 22.62 5 338910 Transcript 1 62.87 108.45 66.25 78.40 83.14 113.91 121.72 120.28 64.04 82.44 244.85 317.97 115.89 295.80 232.08 217.13 212.53 253.29 133.36 146.08 106.00 94.81 80.88 6 471658 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 497722 Transcript 0 44.98 37.41 11.38 38.37 36.15 30.80 24.46 25.00 33.26 17.46 18.28 18.85 22.28 8.19 21.01 8.17 12.78 7.57 7.99 28.89 4.33 19.74 8.96 8 ER1a ExonRegion 0 0.00 1.73 0.02 0.00 3.75 5.87 4.88 1.70 1.01 1.13 12.21 0.00 3.28 2.92 4.21 9.86 2.81 1.66 0.00 3.62 11.09 0.00 2.74 9 E1_Da NovelBoundary 1 46.45 76.83 51.77 38.16 32.60 163.94 105.02 41.07 37.62 47.79 220.58 0.00 6.66 205.84 87.77 325.21 237.77 269.45 240.95 211.31 90.69 94.97 372.95 10 E1a_E1e KnownJunction 0 3.56 2.83 0.00 2.96 3.65 2.44 3.80 0.00 0.00 0.00 20.85 0.00 0.00 9.06 9.39 20.08 4.02 11.61 7.91 0.00 2.53 0.00 8.28 11 ER1b ExonRegion 0 2.12 0.00 2.45 0.00 5.35 7.34 6.62 1.73 1.24 2.29 9.66 0.00 0.00 3.25 14.51 11.89 0.00 1.85 3.19 0.00 8.81 0.00 2.94 12 ER1c ExonRegion 1 17.78 28.23 31.27 18.48 16.70 77.68 46.60 25.51 20.21 26.01 119.30 1.04 1.88 233.61 157.48 176.43 116.85 99.34 116.07 95.83 46.10 47.50 184.07 13 ER1d ExonRegion 1 51.42 69.22 127.50 66.35 57.51 263.35 134.67 122.24 130.11 120.34 344.47 78.48 59.74 273.65 164.45 339.53 446.67 204.81 247.67 257.51 157.09 88.47 315.11 14 E1_Ae KnownBoundary 1 27.19 9.08 40.74 19.05 15.03 23.11 13.43 56.85 83.82 85.47 367.83 24.91 21.26 64.92 29.79 38.62 238.71 51.03 26.64 96.83 130.97 25.90 15.45 15 ER1e ExonRegion 1 46.98 87.10 93.01 56.41 55.25 155.08 111.32 102.55 96.38 100.53 367.26 71.79 62.83 344.10 194.31 264.56 324.09 332.50 177.96 235.44 167.43 99.35 175.73 16 E1b_E2a KnownJunction 1 152.25 159.84 156.23 101.62 84.47 197.33 143.04 167.25 140.39 138.58 464.54 170.91 110.38 450.47 247.73 285.57 376.72 539.10 187.30 235.60 202.44 122.90 174.48 17 ER2a ExonRegion 0 120.83 239.13 220.27 185.24 162.86 281.23 267.51 244.73 198.28 158.97 565.46 266.92 271.84 551.97 341.11 410.88 466.75 542.33 249.44 381.19 269.06 194.09 185.66 18 E2a_E3a KnownJunction 0 139.58 404.66 272.61 209.63 176.15 394.77 300.79 288.71 229.31 203.13 565.04 258.53 415.39 565.60 342.54 340.42 529.97 585.16 337.99 454.64 246.06 159.70 136.07 19 ER3a ExonRegion 0 188.34 334.38 253.33 229.48 230.11 424.58 400.13 313.59 200.11 205.36 584.84 361.15 434.81 563.86 384.34 372.88 425.22 567.93 226.03 374.76 251.44 159.04 160.78 20 E3_Da NovelBoundary 0 193.52 326.85 254.34 290.24 334.04 528.67 513.92 351.47 217.16 200.95 497.81 346.61 384.55 465.36 420.67 364.61 400.09 397.00 221.37 345.22 235.00 225.40 170.30 21 E3b_E4a KnownJunction 0 238.78 462.81 337.72 316.54 526.66 642.58 735.18 359.77 278.59 225.56 527.55 427.94 419.13 586.15 469.62 543.11 689.57 358.74 364.06 531.41 207.39 339.23 256.43 22 ER3b ExonRegion 0 180.79 344.18 276.83 283.59 387.87 552.43 567.92 340.72 248.31 217.15 547.65 410.58 404.52 585.02 432.89 467.37 565.00 423.98 285.36 442.20 246.08 271.81 210.70 23 ER4a ExonRegion 0 161.23 264.54 234.69 230.72 244.09 416.65 380.01 289.67 241.09 209.07 532.18 559.14 539.59 653.90 446.65 453.15 517.97 501.23 295.77 405.55 242.40 188.94 229.97 24 E4a_E5a KnownJunction 0 121.65 304.16 234.47 163.55 250.93 460.13 352.15 249.07 219.12 185.51 539.87 544.98 264.92 535.05 297.79 347.77 501.26 483.76 295.35 382.03 190.15 155.41 178.24 25 ER5a ExonRegion 1 213.54 393.94 225.24 213.17 328.08 495.49 479.80 287.31 238.30 172.87 520.31 730.86 527.71 636.06 447.48 415.50 550.08 500.57 307.44 366.93 260.61 166.85 191.81 26 E5a_E6a KnownJunction 1 330.06 465.84 195.35 227.38 342.36 657.24 603.48 350.61 254.19 177.77 484.81 826.92 619.76 651.01 561.96 484.40 549.51 494.99 382.03 358.89 290.85 200.91 262.66 27 ER6a ExonRegion 0 200.39 263.94 206.95 206.61 339.74 430.74 402.88 303.59 222.44 193.23 523.10 696.59 438.96 674.06 576.42 498.95 533.34 561.47 379.75 361.60 241.29 230.19 238.12 28 E6a_E7a KnownJunction 0 84.90 147.54 107.45 118.83 175.21 209.37 201.87 177.40 95.46 119.72 464.54 594.79 273.03 689.92 515.86 426.38 411.13 404.50 321.23 323.04 219.37 170.72 178.75 29 E6a_E10b KnownJunction 1 98.54 108.47 92.28 49.58 89.13 126.92 99.72 87.45 101.24 47.87 109.92 129.94 13.15 103.07 120.28 74.34 97.71 96.34 107.67 80.09 48.62 46.48 33.80 30 I6 Intron 1 14.65 20.17 8.49 24.82 24.21 14.09 52.36 19.86 18.37 10.63 4.38 29.97 34.10 2.88 12.92 14.57 16.59 9.80 8.13 32.64 3.05 5.16 10.36 31 I6_SR1 SilentIntronRegion 1 9.74 22.16 8.58 16.25 17.93 13.20 58.78 16.48 11.59 5.64 0.39 29.16 30.35 1.81 11.55 9.81 11.55 4.33 3.82 24.26 1.10 2.50 7.34 32 I6_AR1 ActiveIntronRegion 0 13.03 17.56 6.31 22.62 29.61 20.19 54.82 16.58 10.78 9.76 7.62 17.86 27.19 3.46 8.87 14.68 14.99 11.97 7.26 27.47 6.21 2.99 11.18 33 I6_SR2 SilentIntronRegion 0 9.89 15.02 10.66 32.02 30.17 19.74 50.86 17.60 13.83 9.75 4.52 36.10 40.30 2.88 12.75 14.92 16.57 9.52 8.87 37.59 2.92 3.44 10.82 34 I6_SR3 SilentIntronRegion 0 20.44 26.27 11.99 32.31 33.46 24.13 71.12 15.85 16.42 9.09 5.66 40.30 36.41 3.38 15.66 22.36 28.30 14.43 10.52 43.37 5.39 3.89 15.31 35 I6_AR3 ActiveIntronRegion 1 30.50 29.32 15.01 35.26 33.39 21.00 73.17 17.02 20.74 13.34 3.74 40.85 42.72 2.16 24.58 16.71 18.40 9.88 8.46 39.12 3.34 5.64 13.02 36 I6_SR4 SilentIntronRegion 1 13.40 20.45 5.85 24.33 24.35 13.98 62.31 19.30 19.56 11.33 4.29 33.27 47.81 2.83 15.91 12.22 18.72 8.52 8.69 41.35 3.00 4.14 10.08 37 I6_AR4 ActiveIntronRegion 0 18.58 19.50 9.39 24.81 17.80 9.51 58.25 29.83 26.12 11.03 2.30 26.45 19.93 1.11 11.28 17.97 17.45 12.84 13.72 33.09 5.72 3.75 13.94 38 I6_SR5 SilentIntronRegion 0 53.99 26.77 11.05 25.10 23.22 8.56 48.34 48.30 34.32 16.70 3.05 21.61 19.94 2.39 15.46 17.17 8.49 11.56 8.42 23.34 1.62 4.26 13.48 39 I6_AR5 ActiveIntronRegion 0 14.51 23.29 8.99 23.17 44.90 20.22 62.88 33.60 25.43 14.06 3.83 26.12 34.75 2.44 13.92 16.04 12.54 13.49 6.35 28.33 2.16 4.61 9.72 40 I6_SR6 SilentIntronRegion 0 12.24 20.49 9.11 26.10 19.27 8.79 39.43 22.24 25.79 9.94 5.23 20.43 33.72 3.71 12.84 16.43 17.21 8.34 6.25 34.72 1.87 7.96 8.96 41 I6_AR6 ActiveIntronRegion 0 5.36 9.90 3.27 18.68 10.78 9.18 38.37 18.46 24.14 10.87 6.31 22.05 25.70 2.84 8.60 11.91 10.53 8.21 11.75 27.06 2.32 4.23 6.56 42 I6_SR7 SilentIntronRegion 0 8.59 22.55 7.02 25.79 14.01 5.52 35.18 23.41 32.66 21.90 10.64 28.03 22.15 1.91 7.61 7.86 14.54 5.80 6.91 28.59 2.29 2.08 12.56 43 I6_AR7 ActiveIntronRegion 0 10.12 26.40 4.76 19.77 17.83 3.52 40.51 23.37 19.44 14.03 3.44 30.49 32.49 3.48 10.85 8.00 8.06 4.27 5.87 22.34 1.18 8.49 6.76 44 I6_SR8 SilentIntronRegion 0 11.86 12.03 7.80 11.37 16.73 5.10 36.19 11.26 11.67 10.20 5.89 19.33 17.95 4.47 9.48 15.72 13.04 13.48 12.17 18.15 3.68 8.69 10.33 45 I6_AR8 ActiveIntronRegion 0 4.81 21.48 8.02 19.79 10.48 4.91 26.30 14.69 14.40 9.15 5.23 21.86 29.52 2.48 6.14 10.88 14.01 10.41 3.47 20.62 1.62 11.76 6.04 46 ER7a ExonRegion 1 82.65 140.28 92.16 113.82 82.26 133.17 136.57 168.55 83.26 120.80 399.58 562.76 170.38 461.42 340.70 349.07 340.11 397.90 198.32 197.28 173.64 144.66 135.44 47 E7a_E8a KnownJunction 1 53.57 100.38 67.77 91.30 27.50 71.61 80.38 147.41 65.19 98.42 264.91 347.66 53.73 180.18 149.33 196.62 220.94 306.13 100.52 92.62 114.54 74.64 57.62 48 I7_AR1 ActiveIntronRegion 0 4.72 11.23 7.01 16.02 12.62 9.96 25.76 19.07 20.38 7.24 7.28 35.45 35.07 5.95 7.85 12.12 13.11 8.34 7.24 27.07 1.91 14.63 7.05 49 I7_AR2 ActiveIntronRegion 0 11.49 7.36 0.64 23.04 21.02 25.94 22.32 10.95 13.17 4.10 4.51 3.50 12.95 2.55 10.78 9.62 6.60 8.89 6.37 20.87 0.00 7.24 10.77 50 I7_AR3 ActiveIntronRegion 0 12.47 29.07 7.17 18.77 22.36 14.51 30.60 14.66 19.32 6.81 7.74 31.64 24.49 3.89 11.64 14.27 10.10 8.78 7.03 28.03 1.47 18.56 5.08 51 I7_SR3 SilentIntronRegion 0 26.73 26.70 14.80 31.08 38.04 22.06 39.66 25.61 26.13 12.51 12.40 30.89 38.31 4.26 18.73 20.70 14.52 13.44 6.09 33.42 2.18 14.07 14.78 52 I7_AR4 ActiveIntronRegion 0 12.48 14.00 7.67 22.45 7.94 11.51 17.58 11.40 19.94 6.42 3.35 24.91 15.33 3.00 11.90 17.01 10.79 18.15 6.53 14.35 2.52 7.30 8.08 53 ER8a ExonRegion 0 101.59 184.23 77.36 95.42 141.99 196.80 213.72 140.57 84.10 105.26 233.41 304.36 149.14 324.54 285.14 254.26 240.50 339.31 141.62 170.64 106.17 114.62 87.27 54 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 E8a_E10b NovelJunction 0 3.78 0.00 0.00 0.00 0.00 15.90 0.00 1.52 1.71 0.00 7.37 0.00 0.00 5.47 0.00 0.00 0.00 0.00 0.00 0.00 2.97 0.00 0.00 56 ER9a ExonRegion 0 54.51 78.26 52.79 51.04 71.89 72.52 97.79 87.72 56.25 50.46 106.66 98.28 49.06 118.74 101.46 76.48 62.51 71.91 38.49 92.89 22.27 64.24 26.17 57 I9_AR1 ActiveIntronRegion 0 0.00 27.11 8.78 9.54 5.35 7.34 22.51 7.49 7.00 5.73 3.87 34.64 0.00 21.38 2.90 2.97 16.50 7.39 19.11 18.44 0.00 20.14 14.68 58 I9_SR2 SilentIntronRegion 0 6.08 50.35 10.73 18.00 31.76 23.55 50.14 23.66 19.84 9.70 13.33 30.92 17.75 9.55 5.07 6.40 15.29 13.36 7.21 45.26 5.37 12.21 7.87 59 I9_AR2 ActiveIntronRegion 0 7.22 31.72 17.90 17.61 33.15 18.55 47.90 27.84 15.63 7.58 10.22 35.09 21.35 11.37 3.81 8.21 13.83 14.54 5.67 60.34 1.55 13.31 5.48 60 I9_AR3 ActiveIntronRegion 0 6.65 32.88 12.89 17.80 17.61 13.48 32.57 34.66 17.60 12.07 7.58 30.21 20.69 8.95 8.09 7.53 11.76 13.47 5.64 47.64 2.60 9.61 7.31 61 I9_SR3 SilentIntronRegion 0 7.55 26.94 14.13 14.54 21.20 21.85 35.97 22.17 14.96 8.75 9.85 48.32 29.53 7.13 4.02 3.37 9.41 7.62 5.36 39.00 2.25 11.04 1.26 62 I9_AR4 ActiveIntronRegion 0 14.02 48.18 15.43 16.55 21.34 20.39 28.06 20.08 14.86 9.53 11.58 23.45 13.31 7.26 5.28 11.31 11.15 13.50 8.83 29.80 3.64 9.03 3.59 63 I9_AR13 ActiveIntronRegion 0 16.02 7.69 6.76 17.55 12.23 14.63 31.07 17.85 15.67 6.70 2.66 18.12 29.41 1.80 9.77 6.04 12.28 4.88 3.70 25.63 3.19 2.27 5.54 64 I9_AR15 ActiveIntronRegion 0 10.78 36.97 1.46 12.80 11.88 6.57 17.52 14.24 20.71 10.97 6.58 15.16 21.37 3.51 8.29 7.42 8.00 3.24 2.87 18.99 3.40 13.84 6.12 65 I9_SR12 SilentIntronRegion 0 5.83 31.80 4.86 32.11 26.58 16.57 30.31 32.87 30.80 12.49 13.99 30.61 23.27 6.96 10.85 12.40 17.18 17.07 7.53 22.43 11.11 19.77 13.47 66 I9 Intron 0 40.65 42.26 11.34 26.40 32.57 29.00 25.43 19.41 22.10 9.34 16.48 12.06 13.89 8.58 14.28 13.54 14.76 15.30 9.23 22.20 14.96 15.70 14.10 67 I9_SR1 SilentIntronRegion 0 36.73 34.57 5.94 13.96 22.22 18.57 20.11 8.38 11.32 6.18 19.56 5.16 10.38 5.67 10.99 19.37 15.52 9.64 5.76 22.30 15.94 11.30 11.68 68 I9_AR1 ActiveIntronRegion 0 41.99 44.73 12.99 30.22 35.78 32.23 27.13 22.77 25.40 10.32 15.63 14.17 14.99 9.49 15.33 11.86 14.59 17.05 10.30 22.25 14.73 17.07 14.88 69 E10_Aa NovelBoundary 0 49.42 59.27 21.52 46.85 41.09 14.37 22.74 37.50 37.90 24.95 4.47 24.46 21.59 4.83 8.90 7.78 13.37 4.27 9.60 8.69 0.00 24.37 10.50 70 ER10a ExonRegion 0 44.98 37.41 11.38 38.37 36.15 30.80 24.46 25.00 33.26 17.46 18.28 18.85 22.28 8.19 21.01 8.17 12.78 7.57 7.99 28.89 4.33 19.74 8.96 71 E10_Ab KnownBoundary 0 33.71 68.54 28.27 60.13 110.36 89.89 78.43 32.82 35.24 27.91 22.48 26.11 6.17 2.83 34.24 11.54 21.51 11.23 16.94 34.20 11.00 31.29 8.19 72 ER10b ExonRegion 0 106.64 143.67 103.14 95.98 193.68 216.87 116.95 118.06 125.51 75.20 120.64 155.25 61.40 95.05 110.95 63.53 105.20 97.45 116.89 96.09 53.22 83.72 49.72 73 E10_Da NovelBoundary 0 14.00 27.03 30.22 60.23 80.56 157.98 106.08 40.83 52.78 30.86 12.63 62.87 13.15 21.90 4.57 36.91 8.98 28.48 32.94 36.82 0.00 26.15 15.62 74 E10a_E11a KnownJunction 0 39.34 172.07 51.92 47.81 150.85 156.56 71.06 61.94 49.04 34.03 65.49 31.96 40.74 41.44 40.30 35.29 58.34 7.71 54.59 40.08 25.88 33.62 24.33 75 E10a_E12a KnownJunction 0 48.08 24.21 28.50 28.43 29.63 52.75 29.85 56.64 41.03 37.45 59.65 51.02 26.62 33.08 62.18 40.93 33.38 33.25 22.59 43.02 25.14 29.33 20.32 76 I10 Intron 0 31.68 24.31 16.33 30.39 58.80 77.42 46.62 20.07 27.32 15.72 14.02 19.14 18.73 20.90 20.74 16.17 15.38 16.76 18.78 30.09 7.63 19.50 13.68 77 I10_SR1 SilentIntronRegion 0 17.42 13.92 9.24 12.27 242.81 373.81 144.62 13.92 14.63 5.32 26.47 10.88 19.96 8.62 23.14 18.52 17.69 6.73 21.89 25.04 7.63 22.65 15.36 78 I10_AR1 ActiveIntronRegion 0 13.92 8.61 16.37 22.22 55.84 78.33 37.45 19.47 23.55 12.64 12.92 16.64 18.49 21.30 16.52 20.16 15.43 14.50 18.67 25.21 9.52 19.64 12.14 79 I10_AR2 ActiveIntronRegion 0 42.10 36.15 16.64 36.33 49.35 51.96 49.72 20.03 31.70 18.04 17.18 13.59 21.73 23.14 25.52 16.84 20.54 26.45 20.53 40.66 9.06 20.84 18.60 80 I10_SR3 SilentIntronRegion 0 16.82 18.02 4.28 9.61 30.89 69.59 28.92 8.31 10.55 8.75 3.15 28.94 20.41 15.59 20.77 2.66 8.11 12.87 11.62 17.54 8.81 11.73 11.13 81 I10_AR3 ActiveIntronRegion 0 42.59 28.41 19.22 38.03 59.16 79.38 44.54 24.13 30.45 18.81 11.30 29.95 14.31 19.93 18.71 12.84 8.91 7.25 17.42 23.61 3.12 18.59 8.67 82 E11_Aa NovelBoundary 1 116.69 122.41 19.87 45.25 141.26 99.60 76.49 56.93 44.99 21.70 29.48 86.28 13.96 21.84 35.73 10.85 31.70 8.95 17.88 13.04 19.15 13.66 21.26 83 ER11a ExonRegion 0 153.90 189.15 76.10 98.98 175.12 161.95 113.97 98.48 89.68 65.42 69.52 82.65 49.30 45.37 69.58 32.51 48.93 35.79 52.62 68.84 30.84 42.96 20.92 84 E11_Da NovelBoundary 1 113.65 224.30 51.15 92.43 136.50 117.15 119.46 77.10 71.41 35.32 19.79 94.83 65.09 23.90 32.76 26.83 21.69 39.34 8.75 65.39 21.19 16.84 32.10 85 Ix Intron 0 103.36 160.11 51.38 59.62 89.41 86.32 67.16 54.01 51.79 33.29 23.27 23.81 13.44 29.94 39.34 29.35 26.79 47.49 34.03 51.81 16.98 19.73 19.47 86 Ix_AR1 ActiveIntronRegion 0 103.91 160.96 51.65 59.94 89.88 86.79 67.52 54.30 52.06 33.47 23.40 23.93 13.51 30.10 39.55 29.51 26.94 47.75 34.22 52.08 17.07 19.84 19.57 87 E12_Aa NovelBoundary 0 94.54 73.41 62.65 68.72 48.47 124.53 66.69 76.15 105.38 43.11 20.95 11.85 18.18 33.67 41.91 57.42 13.84 68.77 43.20 76.83 27.06 24.13 24.67 88 ER12a ExonRegion 0 60.52 63.50 43.90 58.23 63.60 92.57 58.91 63.89 79.47 45.35 50.32 39.61 20.26 36.89 63.19 44.87 34.38 51.14 49.74 70.75 35.97 40.99 35.25