Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KATNAL1 Gene 0 22.69 93.06 21.79 26.64 86.74 131.80 82.05 95.13 108.69 69.23 28.33 36.65 47.86 35.70 17.86 45.74 51.80 46.52 33.03 72.84 22.22 54.79 35.64 2 380615 Transcript 0 13.31 59.53 13.08 16.79 54.91 79.49 47.94 60.81 65.42 42.55 12.78 18.47 25.11 15.88 8.68 20.73 22.97 22.72 16.96 39.31 10.43 32.88 18.06 3 420782 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 441394 Transcript 0 1.29 2.55 0.24 1.63 1.37 3.74 5.82 0.85 3.70 0.90 4.77 0.68 2.90 0.97 2.05 2.80 1.81 6.60 1.89 8.56 0.57 2.02 2.74 5 380617 Transcript 0 6.00 2.89 10.41 8.89 8.40 18.68 10.86 17.21 25.09 8.46 0.00 0.00 13.64 0.00 0.00 8.72 13.28 21.68 7.62 9.20 5.93 0.00 3.50 6 414289 Transcript 0 0.00 0.00 0.00 1.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 0.00 0.00 7 480854 Transcript 0 2.80 13.18 0.07 4.13 10.00 16.25 17.10 10.96 8.73 4.36 4.38 1.09 5.22 1.15 1.03 4.70 8.44 0.83 2.29 7.75 2.13 4.92 4.90 8 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.78 0.76 3.16 0.00 0.00 0.00 1.46 0.00 0.00 2.82 0.49 2.24 0.25 1.08 0.00 0.95 1.73 1.63 0.00 9 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 4.16 12.49 8.83 0.00 0.00 2.63 0.00 0.00 0.00 0.00 4.45 3.42 0.00 1.87 0.00 3.20 0.00 0.00 3.76 10 ER1b ExonRegion 0 0.00 2.06 1.10 1.03 4.78 16.32 14.06 3.92 1.21 3.48 4.08 0.00 0.00 8.56 4.89 7.58 4.30 6.71 4.72 9.32 9.14 4.21 12.64 11 E1a_E3a KnownJunction 0 0.00 3.35 0.00 3.96 7.47 17.89 13.82 11.71 4.95 6.15 9.84 0.00 0.00 24.19 10.75 4.02 4.11 7.63 4.80 2.75 2.66 8.45 19.46 12 E2_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 10.56 0.00 0.00 1.56 0.00 2.58 0.00 0.00 0.00 0.00 3.25 4.49 2.45 14.40 0.00 0.00 0.00 0.00 13 E2_Ab NovelBoundary 0 7.04 3.16 0.00 0.00 8.32 13.06 27.16 0.00 1.50 1.29 10.42 6.30 0.00 0.00 0.00 12.30 4.58 2.45 0.00 2.94 2.84 6.06 14.85 14 ER2a ExonRegion 0 3.90 0.00 0.00 0.00 0.00 7.34 11.29 0.36 0.52 1.09 6.31 2.73 0.00 1.20 0.00 5.47 0.00 0.29 0.00 2.46 0.00 2.08 8.96 15 ER2b ExonRegion 0 6.40 11.78 4.76 3.77 19.17 44.48 19.89 8.40 16.65 5.96 17.01 3.62 10.25 8.76 1.21 21.81 21.38 18.22 20.52 25.68 11.58 16.72 19.12 16 E2_Da KnownBoundary 0 2.89 9.87 1.69 4.20 3.48 7.78 10.11 3.94 5.84 5.75 0.00 0.00 0.00 2.12 0.00 0.00 3.74 10.90 4.80 14.70 2.72 0.00 0.00 17 E2a_E3a KnownJunction 0 6.00 2.89 10.41 8.89 8.40 18.68 10.86 17.21 25.09 8.46 0.00 0.00 13.64 0.00 0.00 8.72 13.28 21.68 7.62 9.20 5.93 0.00 3.50 18 ER2c ExonRegion 0 1.01 3.56 0.83 1.07 2.99 1.14 2.77 2.14 3.93 1.69 1.52 0.00 0.00 0.46 0.00 0.67 2.59 3.19 0.87 5.72 2.28 0.07 0.10 19 E2_Ac KnownBoundary 0 0.00 5.39 1.74 0.00 0.00 0.00 4.50 2.22 0.00 5.29 2.21 0.00 0.00 0.00 0.00 3.93 7.95 6.96 0.00 0.00 8.46 0.00 0.00 20 ER2d ExonRegion 0 2.21 4.38 1.61 0.80 1.60 28.92 15.97 3.34 3.38 3.58 2.96 0.00 0.00 11.09 1.36 9.98 13.74 6.91 8.66 22.02 5.56 4.78 0.57 21 E2_Db KnownBoundary 0 2.74 12.04 0.00 1.76 0.00 18.80 17.36 3.61 12.62 1.67 0.00 0.00 0.00 2.47 0.00 7.52 4.77 28.31 22.12 37.46 0.00 5.02 3.93 22 E2b_E3a KnownJunction 0 0.00 0.00 0.00 1.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 0.00 0.00 23 ER2e ExonRegion 0 0.25 4.07 0.12 1.47 2.47 6.51 9.22 0.88 6.78 0.83 3.45 0.00 11.59 2.23 3.02 5.07 4.66 14.82 6.68 26.03 0.00 5.92 1.90 24 E2_Dc NovelBoundary 0 0.00 5.59 10.97 0.00 14.94 10.45 13.60 1.85 4.80 11.07 10.32 6.30 21.91 0.00 0.00 0.00 4.77 7.34 0.00 19.37 11.92 0.00 4.27 25 E2c_E3a KnownJunction 0 0.00 2.57 0.00 4.00 0.00 0.00 0.00 0.00 3.59 0.00 7.79 0.00 0.00 0.00 5.19 0.00 0.00 8.08 0.00 0.00 0.00 0.00 0.00 26 ER3a ExonRegion 0 5.11 11.68 17.09 14.12 22.76 54.00 30.31 38.14 62.60 30.74 49.09 37.05 36.83 51.22 14.16 73.46 65.76 57.84 31.60 85.58 28.50 37.33 42.36 27 E3a_E4a KnownJunction 0 7.56 19.86 22.23 21.71 38.03 84.21 66.24 35.24 69.76 44.43 56.01 69.92 54.87 74.75 27.32 72.97 116.69 87.88 24.75 74.34 38.67 39.62 50.36 28 ER4a ExonRegion 0 13.28 20.53 17.00 10.95 41.48 109.66 69.74 50.22 77.10 49.88 52.87 73.17 104.05 76.17 25.77 84.62 122.07 83.08 43.29 97.53 56.05 45.26 44.27 29 E4a_E5a KnownJunction 0 9.19 11.64 11.32 4.73 32.85 35.49 40.01 26.94 43.46 36.05 30.32 43.21 59.25 99.42 60.57 55.46 115.01 93.64 28.24 73.44 51.21 31.54 18.78 30 E4a_E6a NovelJunction 1 0.00 9.60 3.10 1.53 0.00 0.00 4.46 3.86 10.42 1.21 2.21 30.46 0.00 0.00 0.00 3.50 4.11 16.42 0.00 3.26 3.09 0.00 0.00 31 ER5a ExonRegion 0 11.16 21.69 13.30 7.03 27.47 48.72 51.36 31.09 53.29 44.39 43.20 59.29 74.12 86.12 25.68 56.10 98.67 77.37 36.61 73.32 53.90 37.26 37.08 32 E5_Da KnownBoundary 0 3.33 7.56 9.34 7.99 15.45 42.48 63.11 30.44 33.25 20.71 20.53 24.31 54.05 50.09 18.42 31.02 59.84 43.44 12.14 60.53 27.31 16.90 28.51 33 E5_Db KnownBoundary 0 6.52 31.11 6.86 5.03 20.37 60.19 30.74 11.38 30.29 20.33 27.43 18.46 60.22 34.49 20.15 51.95 43.95 38.01 18.07 49.47 17.24 29.70 23.05 34 ER5b ExonRegion 0 6.35 25.93 17.16 12.27 30.44 78.62 67.36 38.89 54.04 40.14 48.08 57.91 113.73 95.42 39.17 74.30 82.94 75.99 27.87 78.46 42.70 37.50 47.35 35 ER5c ExonRegion 0 12.96 30.32 11.21 9.99 28.87 61.29 47.14 30.69 52.77 40.59 44.40 42.77 104.46 76.04 37.01 85.29 68.42 74.58 38.42 69.70 32.25 30.43 37.91 36 E5_Dc NovelBoundary 0 3.48 10.59 1.83 3.26 16.64 2.27 32.64 5.83 5.03 1.67 17.27 12.60 20.45 2.12 8.90 15.89 13.00 7.50 8.09 31.45 6.18 2.39 0.00 37 E5c_E6a KnownJunction 0 21.11 34.93 7.81 7.52 27.93 44.63 43.68 27.27 52.89 43.89 46.27 36.31 57.63 62.10 33.99 77.07 74.33 71.80 43.01 63.09 30.64 22.60 40.04 38 I5_AR1 ActiveIntronRegion 0 3.72 5.14 3.31 3.78 4.86 7.19 20.16 11.34 7.97 2.06 6.74 3.66 6.44 5.46 3.62 15.70 9.12 5.48 7.46 22.86 3.21 4.35 5.20 39 I5_AR2 ActiveIntronRegion 0 0.60 4.38 1.11 2.84 2.10 3.23 25.71 10.00 10.57 3.84 2.65 4.79 13.18 3.46 4.77 16.49 8.53 0.11 7.32 25.20 1.50 7.17 1.82 40 ER6a ExonRegion 0 17.96 24.18 14.15 13.81 32.38 88.21 81.27 41.20 78.22 46.58 63.02 40.35 71.30 77.41 25.68 94.48 100.01 99.43 50.97 94.76 50.39 38.69 41.50 41 E6a_E7a KnownJunction 0 17.04 36.57 21.91 11.79 47.88 109.77 63.15 39.84 83.54 47.28 64.60 88.38 40.91 80.23 42.28 108.60 103.13 102.22 47.34 112.30 49.98 50.33 61.38 42 E7_Aa NovelBoundary 0 3.19 3.09 1.69 2.06 4.07 7.84 12.10 2.01 5.67 9.54 0.00 0.00 0.00 0.00 0.00 0.00 18.42 8.58 0.00 6.26 0.00 3.12 0.00 43 ER7a ExonRegion 0 13.18 39.48 12.23 16.35 51.82 91.34 73.02 50.47 88.79 43.16 67.91 58.45 73.01 80.32 27.97 118.60 114.97 101.40 55.32 96.15 56.49 51.03 52.53 44 E7a_E8a KnownJunction 0 6.74 72.42 16.17 21.98 46.10 154.00 128.25 43.54 123.90 54.26 75.60 51.92 86.52 109.01 37.09 96.38 144.09 128.09 70.21 98.82 73.21 29.45 67.52 45 ER8a ExonRegion 0 20.58 47.42 14.16 19.57 47.39 95.59 96.63 48.71 93.71 56.52 62.61 48.11 67.08 96.44 41.38 103.87 122.09 103.37 56.92 105.16 54.87 43.10 61.78 46 E8a_E9a KnownJunction 0 49.12 54.86 13.90 22.71 26.91 197.67 129.31 59.31 89.03 57.59 43.38 23.71 58.92 111.13 38.57 78.18 131.65 76.23 94.97 98.56 62.46 62.52 89.55 47 ER9a ExonRegion 0 25.80 30.01 22.14 18.30 52.29 134.79 90.48 46.10 81.86 51.28 49.69 30.54 47.16 85.61 31.89 76.25 97.91 87.16 47.91 86.41 38.12 37.65 51.56 48 E9a_E10a KnownJunction 0 16.52 27.17 14.22 14.62 27.76 101.65 54.10 45.59 78.91 40.21 49.17 43.21 72.40 109.60 24.60 67.76 76.48 64.79 84.33 82.58 25.27 36.01 19.21 49 ER10a ExonRegion 0 16.31 34.07 17.20 16.75 75.97 107.51 89.89 51.42 86.44 42.09 53.10 48.33 63.33 85.46 35.74 76.50 96.14 57.31 37.49 74.81 28.78 46.41 58.99 50 E10_Da NovelBoundary 1 3.63 5.13 16.97 17.71 0.00 2.33 18.46 39.55 13.17 10.18 2.11 0.00 0.00 0.00 0.00 0.00 22.44 6.26 9.22 11.89 2.90 0.00 0.00 51 E10a_E11b KnownJunction 0 13.04 29.14 12.09 12.89 62.99 81.26 102.24 43.46 94.18 37.07 59.49 50.57 13.15 72.87 20.03 84.93 111.55 96.75 30.97 86.35 32.68 67.72 30.73 52 ER11a ExonRegion 0 2.80 13.18 0.07 4.13 10.00 16.25 17.10 10.96 8.73 4.36 4.38 1.09 5.22 1.15 1.03 4.70 8.44 0.83 2.29 7.75 2.13 4.92 4.90 53 E11_Ab KnownBoundary 0 14.45 5.92 0.00 8.36 12.39 0.00 20.76 21.28 8.97 4.75 5.16 0.00 13.47 2.47 0.00 4.36 4.77 0.00 0.00 9.01 0.00 2.76 0.00 54 ER11b ExonRegion 0 27.15 36.36 16.27 13.51 43.00 115.14 90.94 46.08 95.87 45.13 59.11 61.95 48.28 72.36 40.20 91.22 103.14 65.93 40.78 90.61 37.92 45.49 52.18 55 E11a_E12a KnownJunction 0 45.05 55.19 13.04 12.75 36.50 85.01 30.78 27.15 99.39 34.33 61.28 34.66 45.45 58.04 33.99 47.51 91.63 44.06 21.84 92.36 37.87 29.58 50.88 56 ER12a ExonRegion 0 30.08 58.54 13.48 11.00 24.46 77.02 26.20 31.85 91.40 38.50 56.33 49.17 31.49 56.84 29.84 53.50 86.77 47.51 32.08 80.39 40.30 35.72 38.60 57 ER12b ExonRegion 0 25.22 90.83 15.01 13.78 61.45 103.96 89.49 50.01 80.50 47.48 41.71 52.29 36.22 51.65 23.45 77.08 62.49 40.48 33.44 60.13 26.18 54.57 39.53 58 E12_Db KnownBoundary 0 26.67 78.14 25.96 13.12 98.56 120.84 108.55 72.50 72.89 56.03 33.96 56.12 56.65 45.62 24.35 59.13 34.78 17.24 18.45 60.02 8.28 42.92 35.77 59 ER12c ExonRegion 0 22.61 81.20 18.26 12.92 58.80 85.51 77.89 49.92 76.52 37.74 40.69 46.36 34.46 42.13 19.74 73.05 48.95 41.16 35.25 62.07 24.66 50.99 38.12 60 E12_Dc KnownBoundary 1 10.45 50.91 24.51 14.75 26.15 41.79 51.80 67.44 98.38 39.68 44.54 67.52 33.44 42.32 4.45 28.71 74.61 49.62 15.91 59.51 26.50 25.90 37.65 61 ER12d ExonRegion 0 26.63 119.07 26.16 33.59 109.04 158.22 92.73 121.62 130.84 85.11 24.10 36.93 50.23 28.94 16.87 39.22 45.69 44.35 33.93 77.66 19.13 64.12 36.13