Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PXMP2 Gene 0 16.54 40.53 91.42 45.83 47.99 45.93 83.31 59.39 35.32 91.99 191.13 53.17 38.49 203.55 153.19 167.07 136.82 93.29 72.16 75.52 40.88 23.36 23.55 2 317479 Transcript 0 21.39 63.74 53.19 28.10 73.41 47.90 130.30 39.27 20.07 44.44 91.00 33.73 28.49 66.39 71.49 104.50 90.67 25.22 43.59 66.12 12.84 12.06 7.50 3 428960 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.00 4.47 0.00 7.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 317555 Transcript 0 2.30 2.47 3.85 1.95 2.05 4.81 5.42 2.30 4.23 7.64 8.38 1.79 0.71 4.68 6.40 7.03 10.46 9.62 2.04 6.12 2.11 2.73 5.83 5 454808 Transcript 0 21.64 57.35 184.69 94.73 28.66 82.27 74.12 82.78 74.30 188.37 344.46 108.02 78.86 481.67 330.64 253.72 242.68 162.24 123.85 108.31 84.99 43.38 41.98 6 ER1a ExonRegion 1 8.88 43.57 7.78 1.94 23.68 33.81 78.25 12.39 4.88 12.79 50.58 0.00 0.00 29.11 17.58 73.99 62.57 7.06 7.63 46.58 5.34 3.79 7.07 7 E1_Ab KnownBoundary 1 35.71 134.58 24.19 10.89 82.85 105.73 293.06 52.57 15.13 44.43 134.24 0.00 0.00 54.21 22.99 238.14 183.36 89.17 33.70 128.47 22.30 8.88 19.55 8 ER1b ExonRegion 0 17.65 45.02 22.37 8.75 24.39 39.65 86.98 26.16 11.00 31.75 83.96 9.52 4.46 36.68 27.12 50.77 72.67 26.82 17.45 44.12 16.57 2.00 9.85 9 E1a_E2a KnownJunction 1 14.45 33.22 49.94 22.94 24.70 36.29 25.13 57.46 20.28 66.56 277.54 55.37 21.43 74.70 50.19 107.07 267.23 74.08 26.54 63.09 37.87 3.12 15.45 10 ER2a ExonRegion 0 8.84 36.80 95.22 49.92 57.36 28.04 72.90 118.47 34.26 111.79 283.27 76.79 32.01 177.19 128.75 291.29 180.04 157.45 95.25 126.50 31.70 18.50 20.94 11 E2_Da NovelBoundary 0 13.63 3.09 8.31 3.83 0.00 0.00 6.32 4.85 1.79 4.57 5.00 12.60 0.00 6.89 4.70 25.55 0.00 16.66 4.52 8.56 0.00 0.00 0.00 12 E2a_E3a KnownJunction 0 11.19 40.19 141.33 68.96 57.13 43.44 85.59 106.05 34.09 114.19 206.42 79.68 39.28 161.46 73.06 161.50 128.38 123.37 72.47 90.31 20.39 8.45 7.43 13 E2a_E5a NovelJunction 0 0.00 0.00 1.15 0.00 3.57 0.00 5.61 0.00 1.74 3.30 10.06 0.00 0.00 7.24 4.70 7.18 4.02 17.08 0.00 3.26 7.66 0.00 3.76 14 I2 Intron 0 9.22 17.46 9.63 12.33 11.76 5.22 31.60 12.83 11.56 9.80 14.97 17.30 10.17 16.19 13.66 38.21 17.00 19.66 6.27 20.85 4.06 1.66 2.83 15 I2_SR1 SilentIntronRegion 0 5.42 6.78 7.02 7.28 10.97 5.87 18.82 7.59 7.08 5.48 9.90 8.65 4.95 9.81 8.86 25.14 10.15 11.30 5.71 16.08 2.82 1.33 2.26 16 I2_AR2 ActiveIntronRegion 0 12.69 33.36 13.66 18.34 14.38 6.04 52.79 19.43 17.56 12.33 24.59 25.26 14.53 19.12 14.72 46.21 22.81 21.87 8.64 26.92 2.38 2.29 2.60 17 I2_SR2 SilentIntronRegion 0 10.18 16.38 9.34 12.77 10.91 4.27 29.09 13.07 11.56 11.76 13.28 19.40 11.72 19.57 16.90 43.99 19.03 25.06 5.33 21.11 6.07 1.54 3.44 18 E3_Aa NovelBoundary 0 6.59 11.91 9.43 11.32 16.13 2.90 40.59 12.57 15.80 8.30 9.63 12.15 0.00 11.89 22.25 38.45 30.11 48.83 6.96 15.47 6.24 0.00 0.00 19 ER3a ExonRegion 0 24.84 88.79 133.40 62.53 89.35 81.90 176.79 105.03 36.00 101.44 181.83 70.33 37.20 227.60 156.95 187.99 135.19 104.99 52.55 104.65 25.62 17.42 12.47 20 E3a_E4a KnownJunction 1 61.12 188.72 169.75 67.12 189.22 105.45 200.59 133.53 39.79 81.31 208.90 153.20 39.12 301.31 249.21 279.07 151.19 172.20 44.80 115.63 26.69 23.15 25.27 21 E3a_E5a NovelJunction 0 3.41 3.35 1.48 0.00 4.16 0.00 10.42 0.00 0.00 1.67 5.32 0.00 0.00 14.19 10.01 6.92 4.68 1.99 0.00 0.00 5.62 0.00 0.00 22 I3 Intron 0 8.04 10.56 7.02 11.91 11.96 4.67 22.28 6.93 7.61 8.71 6.41 4.77 7.32 9.42 11.03 21.86 12.06 11.57 5.97 16.36 1.48 0.90 1.69 23 I3_SR1 SilentIntronRegion 0 8.06 10.59 7.04 11.94 12.00 4.69 22.34 6.95 7.63 8.73 6.43 4.79 7.34 9.45 11.05 21.91 12.09 11.60 5.99 16.41 1.49 0.90 1.70 24 E4_Aa NovelBoundary 0 12.67 13.02 8.60 9.22 3.65 0.00 13.65 4.68 10.21 6.63 2.68 0.00 0.00 23.54 25.47 27.77 17.39 19.94 7.62 38.80 0.00 5.33 0.00 25 ER4a ExonRegion 0 36.70 104.22 140.21 63.62 128.55 55.53 193.68 97.89 29.48 76.18 201.36 58.23 38.03 231.88 204.71 228.33 144.39 106.26 95.14 108.94 23.36 24.97 18.79 26 E4_Da NovelBoundary 0 9.56 29.07 5.26 8.72 21.73 7.84 39.57 23.70 9.23 1.29 6.53 0.00 6.82 24.84 49.57 32.13 0.00 14.63 8.85 12.21 0.00 0.00 4.35 27 E4a_E5a KnownJunction 0 6.67 98.47 177.46 116.00 312.14 98.69 388.63 120.88 32.58 102.05 247.64 44.41 37.98 216.49 177.76 314.28 180.36 93.93 93.56 141.00 46.70 16.59 19.72 28 I4_AR1 ActiveIntronRegion 0 6.93 13.90 14.39 13.51 36.08 8.85 27.65 23.39 8.32 7.99 18.87 9.71 6.48 40.62 27.00 40.19 14.36 21.65 12.23 18.77 1.55 3.45 2.33 29 E5_Aa NovelBoundary 0 20.74 6.25 8.10 7.56 15.79 10.73 8.26 1.89 11.11 16.49 2.58 6.30 6.82 6.71 5.07 16.66 8.23 14.51 9.60 12.34 3.15 0.00 0.00 30 ER5a ExonRegion 0 26.73 59.26 182.10 104.64 142.99 62.17 161.18 142.85 52.27 114.59 259.63 72.62 54.79 222.81 241.31 250.06 203.81 117.99 112.74 167.89 51.30 23.06 15.30 31 E5_Da KnownBoundary 0 24.60 124.52 261.76 147.37 287.01 128.11 294.17 150.33 66.69 130.47 334.08 67.82 115.09 202.66 323.63 455.44 322.49 115.20 286.50 172.07 54.80 43.60 15.71 32 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.00 4.47 0.00 7.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 ER5b ExonRegion 0 33.90 83.92 98.60 54.26 123.14 61.98 182.34 66.15 35.26 76.10 131.42 67.46 56.97 103.68 125.39 135.00 118.78 43.38 79.55 85.65 20.33 20.34 7.93 34 E5_Db NovelBoundary 1 19.78 14.14 29.01 12.65 52.55 27.48 38.33 19.92 19.73 35.67 9.32 5.70 38.80 11.77 25.59 56.40 4.77 14.96 20.33 20.71 8.77 0.00 4.27 35 I5 Intron 0 10.33 9.10 20.49 20.96 16.22 17.78 10.99 11.45 11.90 17.85 3.84 11.56 9.87 8.74 15.57 16.91 8.10 11.76 20.29 10.71 2.88 2.20 2.83 36 I5_SR1 SilentIntronRegion 0 6.87 3.77 8.47 10.36 25.98 6.80 14.72 11.93 5.11 11.09 4.48 15.23 12.24 4.87 12.82 9.67 1.53 8.52 4.43 12.82 2.02 0.97 1.36 37 I5_SR2 SilentIntronRegion 0 15.76 7.13 22.01 28.72 16.03 22.97 12.99 17.64 14.80 22.46 4.43 17.73 16.51 9.06 20.19 17.96 9.88 16.40 22.37 10.72 2.61 1.92 4.71 38 I5_AR2 ActiveIntronRegion 0 14.56 17.33 36.93 38.84 25.53 20.57 17.36 20.08 20.68 30.42 3.74 21.83 22.81 14.78 21.49 21.60 9.23 17.89 34.97 16.85 4.70 2.59 3.13 39 I5_SR3 SilentIntronRegion 0 12.58 15.21 5.60 15.58 16.93 16.52 10.92 5.43 4.58 5.89 2.22 13.05 4.02 9.65 12.63 13.68 4.43 4.41 11.60 6.53 1.69 1.60 0.56 40 I5_AR3 ActiveIntronRegion 0 4.21 3.45 27.76 18.41 9.97 20.65 6.63 9.90 16.31 24.21 6.31 3.01 2.20 7.47 17.44 21.35 13.46 15.54 25.90 13.03 3.77 4.10 4.67 41 E6_Aa NovelBoundary 0 0.00 2.76 1.54 1.33 0.00 7.15 4.02 4.60 0.00 1.26 35.27 5.70 0.00 2.47 4.45 44.09 29.17 38.92 19.77 2.68 10.69 0.00 8.45 42 ER6a ExonRegion 1 1.38 2.30 10.71 3.38 1.88 11.54 11.05 5.57 5.12 14.67 81.53 7.03 4.99 37.42 36.93 52.37 44.68 20.30 21.57 12.99 19.95 3.82 14.33 43 E6a_E7a KnownJunction 0 7.33 22.04 44.53 8.26 7.39 4.77 26.19 41.20 30.24 83.33 221.48 42.31 55.19 169.46 183.94 216.01 126.23 122.70 84.61 73.44 64.80 18.98 43.54 44 ER7a ExonRegion 0 12.21 22.35 112.87 53.43 14.38 56.62 46.35 62.32 61.20 155.42 368.88 47.19 44.75 387.54 248.39 273.95 193.92 198.27 142.72 84.73 83.42 47.15 52.38 45 E7a_E8a KnownJunction 0 17.56 30.59 139.71 53.64 8.06 48.95 76.58 50.40 70.22 189.14 410.37 50.72 73.86 382.43 203.72 202.00 213.18 148.86 68.05 92.04 79.57 43.66 20.15 46 ER8a ExonRegion 0 10.32 26.69 131.88 55.03 15.22 40.34 59.91 61.68 67.70 200.56 393.71 70.90 79.44 384.10 208.35 224.58 205.89 171.03 58.73 97.21 83.60 39.85 26.06 47 ER8b ExonRegion 0 10.76 32.81 155.20 82.91 20.97 69.30 63.49 86.38 80.92 229.63 409.07 103.87 78.28 579.35 330.53 347.06 274.03 215.48 170.21 118.10 112.29 70.76 71.28 48 E8b_E9a KnownJunction 0 12.67 23.22 164.87 90.70 16.13 52.41 67.22 77.14 62.09 198.29 307.08 123.94 51.62 460.59 230.67 268.73 206.17 223.06 121.70 81.43 75.18 60.74 44.90 49 E8b_E10a NovelJunction 0 3.48 0.00 4.97 4.00 0.00 0.00 0.00 4.44 0.00 6.85 5.05 12.60 0.00 2.47 0.00 0.00 0.00 18.41 19.29 0.00 0.00 0.00 0.00 50 ER9a ExonRegion 0 8.85 19.58 131.50 55.97 25.31 56.00 48.35 65.78 60.63 159.29 249.84 112.91 77.73 385.23 246.28 245.18 192.01 138.37 62.92 81.45 66.71 43.85 40.92 51 E9a_E10a KnownJunction 0 13.93 32.56 150.82 68.19 39.22 66.67 69.42 62.97 54.40 186.40 228.90 101.43 56.49 331.39 196.68 220.80 179.43 154.04 85.08 105.72 63.94 48.62 64.79 52 ER10a ExonRegion 0 20.30 41.82 185.21 95.68 30.37 70.45 79.77 78.05 66.54 200.09 366.76 112.82 97.90 458.16 318.94 317.88 284.62 208.99 133.67 101.17 91.14 53.07 53.21 53 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.26 0.00 0.00 0.00 0.00 0.00 8.04 1.99 0.00 0.00 0.00 2.88 3.33 54 E10a_E12a KnownJunction 0 13.26 68.08 233.32 124.66 29.20 92.16 85.45 110.74 90.91 228.38 376.83 108.49 81.65 562.31 352.06 300.52 234.31 220.32 124.80 133.59 82.04 44.39 46.86 55 ER11a ExonRegion 0 4.60 4.94 7.71 3.89 4.10 9.62 10.83 4.60 8.47 15.28 14.49 3.58 1.41 9.36 12.80 14.06 12.88 17.26 4.07 12.24 4.23 2.58 8.33 56 E11_Da NovelBoundary 0 9.56 12.17 16.94 9.86 15.28 28.73 10.16 7.27 9.46 16.14 15.95 0.00 0.00 12.24 14.71 15.89 13.46 9.58 0.00 14.38 0.00 8.63 20.91 57 I11 Intron 0 8.53 6.30 13.17 11.38 8.40 12.53 12.98 7.98 5.70 24.08 24.20 6.08 3.00 11.82 16.12 21.31 11.48 23.77 14.46 16.88 3.84 3.54 8.35 58 I11_AR1 ActiveIntronRegion 0 5.47 6.48 9.74 6.44 4.04 11.72 8.32 4.07 2.55 19.36 15.11 1.60 1.24 11.65 11.11 17.98 8.45 15.03 7.04 10.08 2.50 5.88 9.13 59 I11_SR1 SilentIntronRegion 0 10.14 9.84 16.67 14.77 5.62 13.00 11.56 5.86 7.89 30.88 28.01 4.35 2.96 10.46 16.76 21.03 15.52 24.90 11.28 17.32 4.44 5.46 10.14 60 I11_AR2 ActiveIntronRegion 0 9.65 5.70 14.20 12.79 11.14 13.53 15.75 10.36 6.49 25.37 27.70 8.15 3.77 13.09 18.22 23.94 12.13 27.88 18.69 20.09 4.36 2.51 8.20 61 ER12a ExonRegion 0 30.01 46.62 136.06 64.80 28.12 72.38 62.78 54.82 57.69 148.35 312.08 107.55 76.07 401.03 309.22 206.93 251.04 104.16 122.90 83.03 87.94 42.37 37.09 62 IG14 Intergenic 0 19.55 25.45 63.90 38.73 32.61 39.69 45.73 34.25 23.78 73.65 134.38 47.49 25.45 168.17 137.04 127.19 91.82 57.69 68.77 40.34 30.80 24.66 27.68 63 IG14_AR1 ActiveIntergenicRegion 0 27.38 41.09 171.23 88.60 51.50 81.76 80.55 79.03 52.15 173.42 344.90 92.81 51.10 408.70 297.69 289.18 229.75 160.96 156.66 80.75 83.63 51.90 55.26 64 IG14_AR2 ActiveIntergenicRegion 0 44.22 52.41 70.42 54.89 68.10 63.67 84.57 49.78 35.89 105.45 169.63 86.13 44.14 233.81 220.05 189.71 113.93 56.56 101.82 67.41 33.89 41.97 43.50