Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CCDC92 Gene 0 21.63 23.00 31.98 19.86 23.67 60.03 27.58 60.47 51.76 56.57 15.59 9.32 20.07 27.13 22.07 21.67 11.39 43.22 38.09 23.02 86.18 45.57 27.04 2 238156 Transcript 0 64.79 62.87 105.09 61.46 74.75 183.67 82.27 184.53 150.36 173.55 56.00 27.24 61.44 99.04 74.29 62.48 40.41 121.51 120.66 81.98 291.56 139.67 85.04 3 ER1a ExonRegion 0 3.10 3.81 4.27 2.27 6.50 25.39 8.48 12.44 8.38 10.55 8.23 4.48 1.36 10.36 7.00 10.74 5.16 11.41 20.60 5.54 42.34 14.62 13.83 4 E1a_E2a KnownJunction 0 13.93 15.06 19.87 18.78 13.84 63.94 23.54 73.52 43.11 55.66 36.38 19.66 0.00 56.39 14.46 24.69 12.90 64.34 78.59 11.51 126.95 42.13 31.84 5 I1 Intron 0 9.44 20.81 10.39 19.00 17.44 16.54 35.64 23.74 28.19 20.38 5.45 13.22 18.80 8.67 4.41 7.51 5.43 23.13 21.88 32.36 21.92 11.08 14.58 6 I1_AR1 ActiveIntronRegion 0 4.33 11.93 7.50 9.39 11.07 6.74 34.03 17.12 14.77 12.37 6.53 7.94 10.37 10.42 4.85 8.78 5.23 14.22 16.24 24.54 16.12 4.19 8.31 7 I1_SR2 SilentIntronRegion 0 3.86 11.79 17.40 33.35 12.01 1.71 58.43 25.00 26.24 13.28 9.79 25.30 13.65 12.63 7.16 5.22 8.44 1.64 4.46 35.13 5.24 15.23 0.98 8 I1_AR2 ActiveIntronRegion 0 12.36 18.65 13.09 20.76 28.43 12.24 65.08 29.25 19.80 17.19 5.38 25.80 36.21 7.77 5.48 4.49 3.37 3.12 11.82 30.88 2.77 11.98 7.55 9 I1_AR3 ActiveIntronRegion 0 21.63 41.82 23.88 30.86 35.94 12.90 57.55 32.20 26.33 23.13 6.14 20.65 30.69 9.81 6.87 4.81 7.05 11.29 24.34 30.78 16.03 8.07 8.19 10 I1_SR3 SilentIntronRegion 0 18.84 35.13 26.59 31.06 34.49 9.32 51.35 39.41 24.31 25.92 7.43 18.10 25.34 10.41 9.60 7.09 6.79 20.21 20.98 36.37 8.89 2.71 10.29 11 I1_AR4 ActiveIntronRegion 0 14.19 38.94 25.87 34.91 22.02 7.58 51.64 27.94 25.60 24.77 9.39 23.36 34.12 9.55 5.63 5.05 7.73 11.56 13.05 39.55 9.31 6.14 8.84 12 I1_SR4 SilentIntronRegion 0 7.41 21.78 13.21 21.34 19.05 9.50 52.84 18.81 19.29 18.08 7.91 14.78 16.99 8.07 3.33 5.23 6.52 17.72 20.80 39.32 15.86 7.12 9.67 13 I1_AR5 ActiveIntronRegion 0 9.99 13.21 21.26 27.02 15.95 8.49 39.21 21.16 17.80 15.52 11.07 13.30 6.38 13.29 4.49 12.62 11.47 31.51 25.56 40.51 24.61 4.68 16.14 14 I1_SR5 SilentIntronRegion 0 7.45 20.09 18.14 21.84 17.20 9.33 38.58 14.84 17.58 17.89 4.38 15.62 5.94 9.43 5.63 13.12 10.98 46.49 21.38 48.08 27.78 1.19 15.36 15 I1_AR6 ActiveIntronRegion 0 8.57 23.80 15.00 28.84 13.40 3.74 39.56 21.66 29.52 21.25 7.75 14.88 14.99 10.05 3.35 10.12 5.01 25.08 27.54 43.63 22.20 10.17 15.17 16 I1_SR6 SilentIntronRegion 0 4.71 10.80 3.84 6.30 6.37 9.43 36.36 18.91 22.84 18.07 9.25 14.00 22.19 10.00 2.28 9.21 6.00 21.52 20.62 42.76 22.08 8.66 12.98 17 I1_AR7 ActiveIntronRegion 0 2.85 18.32 2.87 10.11 10.31 7.30 33.67 15.27 21.23 15.96 5.08 31.22 62.73 6.87 2.92 5.72 3.51 4.80 9.71 33.06 6.91 10.62 7.29 18 I1_SR7 SilentIntronRegion 0 1.16 17.02 2.16 16.28 12.83 14.33 63.67 20.68 23.01 22.69 5.71 18.62 55.82 8.06 3.41 3.92 2.80 9.78 20.30 35.49 7.41 12.83 10.91 19 I1_AR8 ActiveIntronRegion 0 3.75 18.60 5.86 16.98 11.32 11.61 39.59 19.94 21.07 14.37 7.83 11.62 32.85 10.59 4.05 8.47 5.75 25.59 22.51 40.54 23.73 10.49 14.37 20 I1_SR8 SilentIntronRegion 0 7.99 18.50 5.42 12.56 12.26 13.16 45.50 16.59 27.00 13.57 5.96 22.26 29.39 8.71 2.74 8.65 6.55 15.71 20.84 30.18 17.66 9.16 15.27 21 I1_AR9 ActiveIntronRegion 0 11.29 20.44 7.17 19.39 15.86 15.63 38.00 16.07 20.55 16.89 5.38 12.52 15.41 7.77 4.09 7.01 4.32 20.30 20.50 33.00 16.13 10.40 15.34 22 I1_AR10 ActiveIntronRegion 0 4.14 7.16 8.26 9.01 8.03 8.45 42.25 20.14 21.64 15.96 6.13 25.04 10.20 8.90 0.00 5.94 11.48 23.54 40.99 29.23 20.50 3.62 12.77 23 I1_AR11 ActiveIntronRegion 0 24.44 16.74 15.61 26.30 25.58 10.15 66.97 30.55 37.25 24.58 6.58 19.40 16.38 9.32 4.22 17.72 7.37 38.11 38.14 42.11 43.02 8.96 30.13 24 I1_SR9 SilentIntronRegion 0 17.99 39.63 16.62 34.32 25.45 14.82 39.19 37.28 30.72 24.49 3.39 11.84 14.68 6.88 4.08 6.93 4.75 21.52 20.70 32.47 18.75 11.60 15.67 25 I1_AR12 ActiveIntronRegion 0 7.32 23.97 11.67 22.71 19.68 12.81 34.12 18.49 29.03 22.02 5.90 16.34 14.68 6.37 2.55 7.72 3.74 22.60 21.77 25.26 20.44 14.26 16.27 26 I1_SR10 SilentIntronRegion 0 10.21 29.16 7.73 17.22 25.34 13.62 35.10 21.99 22.90 19.77 4.41 19.44 15.02 7.72 2.44 5.00 5.56 10.83 27.20 26.59 15.88 10.44 13.29 27 I1_AR13 ActiveIntronRegion 0 4.15 11.04 7.27 16.21 17.15 13.12 31.43 21.58 27.74 11.08 4.60 13.26 8.20 5.76 4.52 7.31 4.65 10.60 13.18 23.18 16.33 13.88 15.78 28 I1_AR14 ActiveIntronRegion 0 4.23 17.35 13.23 24.35 14.81 21.52 37.95 33.07 26.51 14.53 3.61 4.33 17.82 5.85 0.00 2.97 1.76 0.62 9.98 28.94 8.08 14.86 1.96 29 I1_SR11 SilentIntronRegion 0 2.38 20.78 16.81 28.32 21.91 22.12 33.97 24.58 25.94 12.29 0.60 13.94 25.80 4.62 0.00 0.00 0.52 5.02 18.32 20.61 7.23 14.06 11.38 30 I1_AR15 ActiveIntronRegion 0 9.11 11.78 11.05 20.23 14.96 16.65 29.42 18.16 32.11 13.81 1.10 11.89 16.61 6.45 1.17 6.41 3.52 21.26 20.28 31.49 15.90 15.21 15.97 31 I1_AR16 ActiveIntronRegion 0 10.97 24.22 8.02 11.77 12.16 13.00 22.75 17.28 29.19 13.97 0.00 11.81 13.64 9.60 0.00 11.89 3.30 56.44 23.17 25.53 40.67 13.64 18.15 32 I1_AR17 ActiveIntronRegion 0 6.12 23.47 9.50 11.68 11.35 12.64 12.56 16.86 26.34 15.44 0.00 5.15 6.34 6.94 1.02 6.67 0.54 53.19 29.01 19.55 32.52 13.68 30.40 33 I1_SR12 SilentIntronRegion 0 6.89 13.89 6.38 14.27 14.23 19.64 27.44 19.58 28.03 17.00 3.01 9.89 12.28 7.31 3.66 6.24 4.13 22.52 19.38 27.00 23.53 12.50 14.41 34 I1_AR18 ActiveIntronRegion 0 4.16 11.71 5.18 11.65 12.05 23.24 23.45 22.29 36.51 24.43 3.03 6.05 8.77 8.43 3.48 10.36 4.29 44.08 33.06 36.19 35.54 12.11 26.30 35 I1_SR13 SilentIntronRegion 0 6.79 12.43 5.21 10.91 15.02 27.24 22.15 23.56 39.49 27.01 4.99 3.20 8.84 10.73 6.05 8.75 6.96 40.49 33.88 32.95 41.02 17.14 20.22 36 I1_AR19 ActiveIntronRegion 0 9.14 13.08 9.84 17.17 13.52 42.06 21.91 35.87 62.49 39.25 16.64 1.29 2.08 14.95 9.66 14.43 9.66 71.19 32.61 30.60 63.77 30.69 39.02 37 I1_SR14 SilentIntronRegion 0 9.10 11.08 8.21 15.13 18.06 42.64 8.67 48.22 60.77 40.37 8.99 9.96 6.33 11.21 17.12 17.09 15.68 64.67 28.99 22.34 59.17 19.69 28.78 38 I1_AR20 ActiveIntronRegion 0 15.76 18.63 10.23 21.27 25.11 53.30 26.64 41.18 56.90 37.75 6.39 7.77 7.16 11.56 8.24 12.39 6.22 49.52 34.24 33.45 45.01 20.88 25.11 39 E2_Aa NovelBoundary 0 63.20 23.88 34.03 47.81 88.71 93.53 69.03 76.11 112.79 53.05 20.01 6.30 13.47 6.89 4.45 3.76 4.39 52.36 31.44 25.06 48.37 41.64 22.71 40 ER2a ExonRegion 0 53.87 49.16 64.19 44.87 86.20 195.86 76.82 156.55 114.72 129.92 53.87 37.85 46.09 76.65 56.81 42.22 25.98 117.80 126.42 73.80 245.44 130.39 98.49 41 E2_Da NovelBoundary 0 17.26 28.94 13.39 16.98 30.73 17.72 23.27 28.67 36.40 33.34 2.26 11.70 6.17 9.18 4.45 10.68 0.00 22.84 54.21 16.36 31.07 13.96 4.35 42 E2a_E3a KnownJunction 0 37.27 55.25 110.52 48.78 36.08 231.51 111.29 185.33 137.12 164.80 64.23 31.81 26.78 113.13 77.51 62.55 48.62 100.69 117.09 76.00 301.60 159.64 67.52 43 I2 Intron 0 9.12 11.56 8.18 11.02 14.98 21.33 16.42 27.52 29.18 18.85 2.50 2.83 3.33 4.73 3.53 6.91 4.27 33.31 16.74 13.01 22.96 8.80 8.85 44 I2_AR1 ActiveIntronRegion 0 9.15 11.60 8.21 11.06 15.03 21.40 16.48 27.61 29.28 18.91 2.51 2.84 3.34 4.75 3.54 6.94 4.28 33.42 16.80 13.06 23.04 8.82 8.88 45 E3_Aa NovelBoundary 0 10.52 8.35 26.91 13.62 17.57 27.03 18.86 18.89 31.94 22.64 2.32 0.00 0.00 7.42 14.96 0.00 7.20 31.92 21.55 31.89 25.70 10.84 12.21 46 ER3a ExonRegion 0 74.11 87.03 141.68 76.14 104.63 190.24 91.17 269.22 224.82 248.88 70.61 48.60 71.24 121.70 87.47 81.52 56.25 174.49 147.78 94.34 424.09 180.60 100.96 47 E3a_E4a KnownJunction 0 117.72 109.78 204.37 117.37 143.38 325.15 108.95 265.34 235.33 259.27 81.49 30.76 161.19 157.99 126.83 80.15 62.27 181.61 212.34 148.67 500.27 227.18 151.60 48 E4_Aa NovelBoundary 0 13.78 2.50 3.05 7.06 3.74 15.79 15.06 9.41 11.40 6.18 0.00 0.00 0.00 0.00 4.45 4.27 0.00 10.94 21.74 3.26 24.28 0.00 4.27 49 ER4a ExonRegion 0 99.07 98.34 200.11 115.23 134.74 281.58 123.79 328.86 274.93 330.39 97.01 38.14 130.65 172.81 149.07 115.56 70.10 212.67 187.86 159.68 496.62 234.79 143.34 50 E4_Da NovelBoundary 0 22.15 8.75 0.00 3.60 7.89 7.10 1.68 0.00 4.11 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 13.89 0.00 3.00 14.27 5.76 0.00 51 E4a_E5a KnownJunction 0 168.55 131.16 181.81 116.64 136.16 301.59 177.71 335.57 283.24 329.73 85.86 30.46 102.10 169.40 137.34 131.50 77.14 204.70 175.53 156.66 450.05 241.32 144.09 52 E5_Aa NovelBoundary 0 15.26 2.70 6.36 9.92 18.85 11.98 10.07 6.28 5.96 5.24 0.00 0.00 12.99 2.47 0.00 0.00 0.00 4.35 7.81 6.26 8.83 6.06 15.54 53 ER5a ExonRegion 0 15.46 16.22 18.95 13.04 11.18 37.76 18.66 33.94 31.59 32.71 6.32 3.41 13.50 12.96 12.16 13.43 5.21 25.90 19.76 11.63 36.68 26.40 13.72 54 IG4 Intergenic 0 4.06 7.96 6.10 8.09 9.33 12.78 10.64 18.14 7.86 13.98 1.65 0.00 2.83 3.08 5.60 2.96 1.64 36.12 22.88 27.70 21.31 18.08 7.52 55 IG4_SR1 SilentIntergenicRegion 0 4.72 5.78 4.96 9.66 3.26 14.06 9.63 21.96 6.70 14.41 0.44 0.00 5.26 4.06 6.42 4.25 0.48 36.55 18.03 28.09 20.26 21.56 11.85 56 IG4_AR1 ActiveIntergenicRegion 0 3.95 9.27 6.70 7.75 12.41 12.43 11.09 17.48 8.73 14.59 2.25 0.00 1.97 2.85 5.45 2.63 2.22 37.93 25.84 28.88 22.95 17.50 6.19