Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GOLGA3 Gene 0 39.82 50.64 58.68 78.17 64.98 89.74 73.39 62.19 82.98 104.40 65.43 82.04 76.66 113.82 118.05 122.39 108.78 111.79 69.78 78.79 168.91 102.97 164.09 2 456883 Transcript 0 5.43 0.00 3.02 1.95 2.85 2.69 4.99 1.84 1.07 2.29 0.00 1.73 0.00 3.79 7.06 2.48 5.06 0.00 4.03 6.74 20.49 4.65 0.00 3 204726 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 450791 Transcript 1 12.74 15.79 35.42 55.17 7.39 18.57 29.85 41.16 58.59 65.97 61.65 61.22 68.18 102.13 60.94 99.12 108.84 89.58 35.20 79.64 125.41 33.43 103.72 5 IG17_AR4 ActiveIntergenicRegion 0 5.62 2.41 1.60 0.00 5.30 5.01 13.83 1.20 0.00 4.68 12.86 0.00 1.44 12.33 14.21 18.32 25.26 4.19 10.01 11.16 8.77 3.83 19.00 6 IG17_AR3 ActiveIntergenicRegion 0 1.74 1.28 1.23 0.00 6.60 1.45 4.27 1.70 0.74 1.00 7.11 0.00 0.00 11.03 13.80 11.12 15.17 5.84 12.18 6.97 26.23 2.35 31.73 7 IG17_SR1 SilentIntergenicRegion 0 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 1.27 0.00 1.27 0.00 0.00 0.64 0.00 6.49 5.47 4.18 2.93 1.29 11.37 0.00 6.03 8 ER1a ExonRegion 0 3.53 4.25 10.78 9.84 2.50 7.77 7.62 15.88 18.82 33.34 9.97 17.24 17.63 27.56 30.85 30.50 24.76 39.38 18.26 35.45 61.50 21.49 45.27 9 E1_Da NovelBoundary 1 2.74 3.35 6.48 5.09 7.22 5.05 12.50 11.09 15.34 14.96 9.69 25.96 46.10 14.13 14.59 18.11 12.62 44.73 16.09 23.59 32.56 0.00 43.02 10 E1a_E2a KnownJunction 0 7.19 2.70 2.87 8.36 0.00 0.00 2.25 6.45 6.22 24.74 0.00 0.00 6.82 14.72 14.09 4.19 13.56 16.62 20.71 9.27 31.51 12.06 31.50 11 I1 Intron 0 80.68 27.76 15.72 15.07 16.50 17.37 30.78 15.11 18.41 17.11 19.91 43.23 31.63 42.39 47.80 52.27 40.89 32.14 65.74 37.21 45.11 24.43 62.93 12 I1_SR1 SilentIntronRegion 0 4.54 0.97 5.22 1.94 4.46 5.68 9.15 5.52 4.39 5.30 5.07 10.38 19.20 7.60 20.95 19.83 14.95 15.54 16.70 16.23 25.21 5.96 34.98 13 I1_SR2 SilentIntronRegion 0 11.87 10.21 18.17 17.93 15.52 15.98 32.95 17.37 21.57 19.84 11.59 42.98 30.83 21.98 23.81 41.33 35.13 34.18 33.63 36.48 43.89 19.92 61.68 14 I1_AR2 ActiveIntronRegion 1 2041.24 557.81 0.00 0.00 89.01 98.58 67.15 0.00 0.00 0.00 280.12 183.47 102.21 674.04 733.47 447.50 285.12 51.39 1036.26 140.83 156.38 208.08 208.06 15 I1 Intron 1 23.50 14.94 21.39 25.96 27.82 22.69 38.37 22.68 21.52 25.82 12.22 50.46 40.13 14.17 35.14 34.35 35.59 30.18 25.36 28.99 37.58 26.21 58.45 16 I1_SR1 SilentIntronRegion 1 23.52 14.96 21.41 25.99 27.84 22.71 38.40 22.70 21.54 25.84 12.23 50.50 40.16 14.18 35.17 34.38 35.62 30.20 25.38 29.02 37.62 26.23 58.51 17 E2_Aa NovelBoundary 1 26.38 29.40 25.69 52.84 36.93 23.28 33.48 34.71 41.32 59.93 5.21 114.19 42.85 14.48 37.46 11.96 43.29 49.16 4.42 32.79 58.63 44.21 51.05 18 ER2a ExonRegion 0 45.59 32.45 46.79 60.05 30.31 55.80 55.29 51.95 86.88 103.63 82.88 123.94 86.65 104.57 123.76 148.66 128.62 143.28 96.53 105.70 200.88 97.96 200.44 19 E2a_E3a KnownJunction 0 34.52 45.26 34.18 38.12 48.90 87.85 112.66 67.48 67.65 115.75 82.18 59.27 82.14 131.44 133.75 127.15 123.80 124.48 58.26 106.61 233.46 83.09 163.64 20 E2a_E4a NovelJunction 0 0.00 2.89 3.67 3.86 0.00 0.00 1.85 2.55 9.95 13.40 6.95 6.30 0.00 9.71 14.71 3.50 15.99 4.15 0.00 0.00 26.26 10.41 7.09 21 ER3a ExonRegion 0 49.84 39.67 64.82 77.41 32.72 71.17 69.92 64.04 102.97 121.32 89.00 56.00 64.04 151.62 158.54 161.12 188.97 184.40 94.94 128.42 248.70 109.26 184.36 22 E3_Da KnownBoundary 0 27.12 26.90 21.82 11.49 24.45 31.91 44.43 41.69 44.99 68.34 32.27 12.75 13.15 34.91 46.48 49.56 82.66 82.37 25.60 45.38 115.21 45.31 67.69 23 E3a_E4a KnownJunction 0 12.74 15.79 35.42 55.17 7.39 18.57 29.85 41.16 58.59 65.97 61.65 61.22 68.18 102.13 60.94 99.12 108.84 89.58 35.20 79.64 125.41 33.43 103.72 24 ER3b ExonRegion 0 31.73 14.96 42.42 22.01 23.23 39.27 41.44 37.19 46.77 62.23 44.99 31.79 18.72 89.10 101.13 91.99 87.61 98.64 65.38 65.90 118.61 80.30 101.39 25 E3_Db NovelBoundary 0 35.12 6.71 4.02 21.61 27.76 0.00 14.53 9.08 5.15 9.89 5.11 0.00 6.82 2.47 8.78 8.46 4.77 5.64 9.60 15.28 10.93 2.51 11.18 26 E3b_E4a KnownJunction 0 10.67 16.25 46.01 15.98 14.60 27.43 40.50 46.45 35.21 63.10 32.38 44.56 35.22 95.47 58.84 86.47 47.03 80.17 76.71 55.80 113.79 73.54 103.46 27 ER4a ExonRegion 0 52.82 49.06 70.08 68.26 37.86 77.39 81.28 58.86 102.75 118.20 94.95 83.60 85.79 143.96 136.00 153.39 177.69 127.72 91.30 127.64 242.10 118.54 197.61 28 E4_Da NovelBoundary 0 40.75 5.59 26.14 11.15 0.00 2.84 9.63 31.54 8.45 19.07 19.11 0.00 5.84 7.89 44.01 8.54 12.81 4.15 8.09 8.50 27.37 11.27 4.35 29 E4a_E5a KnownJunction 0 48.75 65.98 75.93 115.40 74.62 114.20 157.71 98.70 151.21 146.26 104.82 103.38 105.35 173.41 169.23 218.75 176.34 197.53 115.58 123.87 288.31 151.86 307.48 30 I4_AR1 ActiveIntronRegion 0 15.86 3.50 11.05 8.78 13.11 1.06 15.24 11.13 4.24 11.33 13.92 5.14 4.69 4.18 21.49 11.99 10.46 8.72 8.26 3.68 18.41 10.21 15.21 31 ER5a ExonRegion 0 38.80 44.36 58.49 75.85 49.45 80.60 81.10 68.69 112.94 139.99 91.70 109.69 81.49 160.39 115.15 170.86 152.55 173.71 112.53 128.96 271.83 110.38 239.48 32 E5a_E6a KnownJunction 0 30.89 32.89 81.28 66.39 16.55 116.64 51.85 82.39 93.66 120.83 95.45 86.58 44.80 115.37 150.20 182.69 185.60 204.86 82.07 130.84 264.90 112.85 193.35 33 ER6a ExonRegion 0 27.72 32.85 57.75 56.39 33.33 105.49 78.44 64.23 117.46 128.36 106.91 58.06 59.17 171.52 156.38 219.11 163.98 215.71 93.57 133.68 288.27 107.21 228.17 34 E6a_E7a KnownJunction 0 35.34 52.23 56.56 62.83 40.07 99.49 68.41 86.67 123.20 133.85 103.66 103.68 58.60 125.02 191.24 160.04 169.33 187.70 106.64 105.02 241.86 95.59 224.68 35 ER7a ExonRegion 0 29.74 39.15 78.17 90.10 32.91 76.95 68.78 65.58 114.56 133.19 95.79 64.67 58.37 133.70 160.37 158.85 154.97 192.80 90.04 147.00 252.06 112.55 222.42 36 E7a_E8a KnownJunction 0 40.90 59.66 88.38 102.15 28.95 141.28 83.56 83.05 118.34 160.80 106.18 127.84 53.08 121.14 116.20 157.74 175.60 185.09 106.17 153.40 256.31 147.88 202.57 37 ER8a ExonRegion 0 28.38 46.87 66.67 89.68 34.67 65.22 71.57 87.84 106.04 130.68 64.24 63.60 68.71 133.35 172.15 163.48 152.93 178.13 95.01 156.06 238.33 101.47 226.05 38 E8_Da NovelBoundary 0 13.48 5.85 13.25 24.71 0.00 4.77 12.59 4.07 12.56 18.80 2.58 6.30 0.00 0.00 18.05 12.39 17.20 20.48 16.75 17.83 28.48 8.21 20.74 39 E8a_E9a KnownJunction 0 30.67 33.35 43.91 60.37 34.55 79.27 36.88 74.92 77.49 138.61 68.65 69.17 92.69 189.12 159.22 165.00 167.27 188.41 141.56 156.02 229.56 121.79 237.22 40 I8_SR1 SilentIntronRegion 0 5.24 1.76 5.25 8.04 3.90 3.29 17.71 1.46 6.30 7.08 5.08 2.05 0.48 2.37 17.90 8.97 17.96 5.45 7.23 5.41 16.02 5.69 19.81 41 I8_AR1 ActiveIntronRegion 1 18.69 4.63 8.50 32.68 14.35 5.97 33.75 4.78 14.16 17.01 4.40 2.12 3.59 6.77 24.44 27.63 38.35 19.11 24.53 13.13 27.80 7.45 33.12 42 ER9a ExonRegion 0 25.01 34.88 57.64 98.13 40.27 94.41 65.76 92.25 95.99 146.11 79.18 71.94 65.69 161.41 184.65 185.28 147.01 220.24 111.70 163.84 282.68 106.64 237.12 43 E9a_E10a KnownJunction 0 34.01 53.35 52.22 125.49 64.69 75.58 78.34 87.53 98.64 176.27 87.71 78.63 73.05 179.47 134.87 182.77 157.74 215.10 85.37 182.93 237.97 147.21 278.80 44 ER10a ExonRegion 0 34.86 34.09 54.33 88.18 40.93 66.70 87.74 65.76 78.46 131.36 74.87 72.59 72.49 153.83 182.99 153.17 165.39 173.83 110.01 133.75 301.50 116.32 201.40 45 E10a_E11a KnownJunction 0 32.97 43.54 49.41 79.71 26.74 97.67 75.39 68.72 86.17 119.19 91.60 62.42 54.05 168.46 190.49 109.89 156.15 156.11 41.98 126.49 321.74 125.83 230.14 46 ER11a ExonRegion 0 40.98 48.57 67.05 98.21 59.03 92.34 87.86 81.71 114.80 150.79 105.26 88.45 109.27 179.89 187.40 195.22 185.38 172.71 91.01 122.30 299.63 129.55 257.23 47 E11_Da NovelBoundary 1 21.86 2.70 20.73 21.58 37.52 9.94 33.56 14.91 25.84 26.65 2.47 6.30 33.93 2.65 30.04 25.12 8.32 11.36 7.72 18.79 22.67 17.45 11.27 48 E11a_E12a KnownJunction 0 57.12 61.77 118.03 115.74 50.85 131.00 103.03 97.67 169.82 181.26 109.50 132.04 195.60 226.62 267.76 155.17 176.72 192.22 120.10 120.55 238.52 193.68 324.55 49 I11 Intron 0 13.37 9.80 10.43 24.50 11.46 7.66 18.33 18.39 13.99 27.21 3.59 11.09 8.63 3.94 16.06 17.71 14.61 20.46 13.98 17.54 20.05 10.04 28.61 50 I11_SR1 SilentIntronRegion 0 13.43 9.84 10.47 24.60 11.51 7.69 18.41 18.47 14.05 27.33 3.60 11.14 8.66 3.96 16.13 17.78 14.67 20.54 14.04 17.61 20.13 10.08 28.73 51 E12_Aa NovelBoundary 0 3.48 0.00 11.95 16.98 14.69 4.88 2.16 26.33 6.16 20.15 2.68 24.76 0.00 7.36 19.28 24.69 17.30 10.90 0.00 20.20 14.15 8.27 3.84 52 ER12a ExonRegion 0 33.70 56.60 87.06 109.90 83.91 159.92 119.84 117.34 136.86 166.87 120.76 202.21 182.01 226.92 205.32 191.55 230.30 189.11 121.86 138.76 361.75 177.15 305.82 53 E12a_E13a KnownJunction 0 51.42 60.84 80.78 128.49 97.71 182.62 186.85 100.22 136.17 152.66 110.34 210.82 122.07 162.11 152.30 235.49 250.30 191.89 132.52 147.01 415.33 140.65 287.76 54 ER13a ExonRegion 0 26.26 37.91 79.71 108.72 48.94 95.70 77.00 73.95 110.43 138.36 87.75 150.48 155.98 189.09 192.88 157.92 157.84 170.76 96.00 125.72 265.36 129.01 229.44 55 E13a_E14a KnownJunction 0 55.94 37.95 91.19 100.52 104.16 167.29 104.62 73.93 113.86 161.01 136.93 103.68 172.55 211.49 205.20 183.80 175.69 221.15 96.29 191.56 269.47 143.72 242.94 56 ER14a ExonRegion 0 46.45 43.65 86.96 95.06 64.61 130.64 113.69 84.29 99.73 140.85 109.52 104.96 124.56 165.64 181.80 199.32 193.99 199.83 110.82 124.25 258.41 118.19 237.47 57 E14a_E15a KnownJunction 0 80.68 39.01 81.04 105.28 81.49 151.33 125.60 97.55 91.98 133.32 105.08 136.39 173.20 215.02 195.69 180.72 187.75 232.30 121.13 129.30 236.30 140.10 270.69 58 ER15a ExonRegion 0 22.28 26.51 53.79 56.40 34.88 85.51 53.71 56.90 71.43 110.55 67.34 79.31 76.90 142.18 160.67 140.13 154.11 142.03 70.11 95.90 206.78 86.85 184.98 59 E15a_E16a KnownJunction 0 33.93 33.88 66.35 55.50 63.92 102.90 65.80 58.61 92.45 157.46 67.54 72.62 38.80 144.51 206.44 159.79 140.91 181.65 80.00 110.45 277.38 107.59 157.07 60 ER16a ExonRegion 0 28.63 33.99 57.49 57.35 58.72 103.94 91.21 73.14 102.66 138.39 79.54 80.46 40.65 152.69 155.98 172.36 146.09 158.05 85.23 98.32 253.92 120.06 211.46 61 E16_Da NovelBoundary 0 0.00 6.31 17.21 22.37 8.57 7.78 5.26 22.76 17.88 29.58 2.68 6.30 0.00 9.06 14.83 8.72 13.18 11.57 13.93 19.94 26.19 17.76 24.58 62 E16a_E17a KnownJunction 0 43.42 63.28 50.38 58.70 62.90 131.91 101.53 65.23 110.44 143.01 115.50 100.98 52.59 136.44 149.08 168.76 191.21 126.85 72.28 123.23 216.16 135.88 245.68 63 I16 Intron 0 4.39 5.53 14.32 20.40 7.46 15.45 11.75 19.36 16.82 19.94 6.39 6.76 5.56 7.85 11.67 16.18 10.91 19.23 13.62 12.96 25.70 12.15 30.07 64 I16_AR1 ActiveIntronRegion 0 6.75 3.60 15.84 19.42 5.69 16.89 13.83 25.54 18.90 19.07 7.87 6.27 4.93 7.70 9.70 17.88 12.28 22.62 8.46 13.19 21.46 12.91 28.60 65 I16_SR1 SilentIntronRegion 0 3.04 6.68 13.49 21.05 8.51 14.68 10.59 15.86 15.67 20.52 5.55 7.06 5.95 7.97 12.85 15.25 10.16 17.35 16.67 12.88 28.26 11.76 31.03 66 E17_Aa NovelBoundary 0 40.01 30.72 23.18 94.13 62.90 80.69 75.65 27.03 46.61 48.94 18.90 12.00 36.20 7.42 31.15 39.22 25.99 31.01 13.55 30.62 50.10 32.58 67.95 67 ER17a ExonRegion 0 69.12 81.34 85.71 118.68 85.42 141.12 111.13 115.59 155.04 191.01 121.56 122.62 88.92 178.46 181.90 225.37 211.89 187.24 131.65 139.38 304.37 155.55 296.87 68 E17a_E18a KnownJunction 0 59.42 78.60 109.43 199.21 76.57 123.96 120.03 132.30 186.60 261.37 117.56 119.14 90.09 166.76 188.64 209.43 226.74 195.49 138.36 151.55 319.51 123.08 311.58 69 ER18a ExonRegion 0 49.19 50.14 111.28 148.82 64.90 126.05 100.80 104.99 160.50 189.66 97.78 115.86 92.28 182.32 188.56 206.09 171.99 155.45 118.65 153.57 270.06 153.04 245.72 70 E18a_E19a KnownJunction 0 41.04 89.85 108.36 103.32 52.21 151.05 67.22 85.84 134.72 113.92 107.82 108.19 131.48 173.00 174.55 142.10 181.11 147.70 75.96 126.36 202.01 156.88 182.68 71 ER19a ExonRegion 0 45.26 58.52 89.68 121.06 52.33 93.69 67.64 78.46 115.49 140.50 89.16 80.96 94.44 177.62 177.14 164.76 137.74 186.98 81.16 87.31 233.26 105.08 212.21 72 E19a_E20a KnownJunction 0 87.65 82.95 128.38 167.88 83.70 169.62 113.76 99.85 163.71 196.47 125.72 76.37 114.93 225.32 276.28 250.62 139.50 250.83 170.83 112.81 273.86 142.43 290.83 73 ER20a ExonRegion 0 89.20 82.55 121.82 139.31 56.89 128.97 100.05 127.87 143.38 203.05 122.18 100.20 139.33 203.91 200.86 208.05 180.68 228.87 92.06 111.85 331.09 155.03 276.95 74 E20a_E21a KnownJunction 0 88.83 91.10 102.39 148.10 75.55 187.28 197.10 134.19 157.29 214.25 162.04 80.73 87.49 201.31 190.62 181.32 211.22 201.75 85.27 102.52 309.63 153.14 251.99 75 I20_SR1 SilentIntronRegion 0 8.02 4.44 13.44 8.99 7.28 5.44 7.68 8.44 3.04 9.26 0.32 5.84 2.89 4.21 11.10 18.12 13.78 14.36 3.41 4.60 12.70 5.59 11.93 76 I20_AR1 ActiveIntronRegion 0 14.21 1.63 5.54 4.79 3.34 7.83 5.72 6.61 2.29 9.03 0.93 2.01 6.20 7.86 12.69 10.51 6.90 8.51 0.00 5.70 7.71 6.59 9.65 77 E21_Aa NovelBoundary 0 20.60 22.96 16.17 8.29 11.04 25.78 24.51 12.16 14.64 7.17 2.42 12.45 6.82 4.94 10.26 4.36 13.46 10.90 0.00 3.07 18.16 8.51 15.88 78 ER21a ExonRegion 0 31.44 81.26 140.06 168.33 103.88 222.65 141.08 157.30 161.92 218.68 129.87 178.85 202.43 206.62 212.85 225.04 193.33 228.49 118.92 134.91 382.48 162.19 293.81 79 E21_Da NovelBoundary 0 31.78 3.35 14.16 14.08 4.24 5.51 0.00 19.63 15.28 13.22 2.53 0.00 0.00 0.00 19.16 12.13 4.58 35.28 18.07 3.20 15.51 0.00 7.77 80 E21a_E22a KnownJunction 0 32.75 60.12 142.48 205.34 97.28 122.49 77.06 162.78 220.66 268.59 116.03 246.53 225.47 193.66 357.13 310.77 182.70 344.19 142.87 158.32 321.06 249.47 401.04 81 ER22a ExonRegion 0 30.64 50.91 149.87 187.86 50.99 133.73 75.07 150.04 192.66 259.84 157.50 177.82 197.98 241.16 245.64 306.56 247.81 300.62 157.45 153.72 406.76 236.04 381.35 82 E22a_E23a KnownJunction 0 37.93 49.07 79.65 125.13 65.79 130.21 78.48 94.55 143.17 180.35 76.91 86.73 102.43 142.27 161.94 113.99 116.32 181.28 64.75 97.86 262.68 161.29 215.80 83 ER22b ExonRegion 0 5.43 0.00 3.02 1.95 2.85 2.69 4.99 1.84 1.07 2.29 0.00 1.73 0.00 3.79 7.06 2.48 5.06 0.00 4.03 6.74 20.49 4.65 0.00 84 I22_SR1 SilentIntronRegion 0 12.26 4.09 1.79 8.58 2.21 3.94 9.98 4.47 8.82 12.14 3.61 0.00 2.41 6.63 13.63 25.74 11.13 11.22 9.94 11.33 15.55 14.81 25.75 85 E23_Aa NovelBoundary 0 5.85 0.00 8.54 5.16 8.32 8.12 31.31 12.90 1.79 10.31 0.00 0.00 0.00 9.06 14.09 16.06 11.87 8.58 28.33 6.39 21.19 22.90 14.51 86 ER23a ExonRegion 0 45.27 58.80 64.51 59.77 56.92 150.91 107.73 44.19 91.84 136.55 80.45 94.09 143.33 154.05 192.08 183.08 134.41 97.13 78.10 81.41 247.02 148.40 226.19 87 E23a_E24a KnownJunction 0 26.00 34.73 73.80 107.01 93.46 207.38 115.53 52.04 96.30 99.36 33.11 55.22 81.81 101.83 112.12 99.29 84.71 61.31 69.08 50.30 136.78 73.60 117.46 88 ER24a ExonRegion 0 43.68 60.12 48.22 70.61 86.98 90.62 71.36 49.21 59.05 70.10 41.60 69.44 61.91 73.16 77.95 73.97 59.83 52.19 43.17 35.90 77.03 89.63 103.59