Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ARL6IP4 Gene 0 186.82 125.38 323.83 284.88 135.73 151.42 138.19 152.38 106.16 204.13 335.82 160.80 111.19 367.48 523.89 246.88 265.53 216.79 212.41 156.88 234.63 146.35 129.49 2 453766 Transcript 0 102.98 61.83 267.76 270.10 48.64 98.24 28.88 83.05 78.47 185.86 125.82 186.96 82.14 327.45 529.95 271.64 162.88 248.39 393.33 158.07 136.16 189.27 287.08 3 315580 Transcript 1 29.41 47.29 80.28 67.42 23.09 56.10 13.82 55.41 35.88 27.80 60.49 26.41 26.46 85.35 175.29 55.71 11.22 92.11 101.37 35.79 42.01 9.06 76.66 4 392435 Transcript 1 101.65 58.15 342.89 193.65 27.08 54.00 77.99 139.20 84.84 198.97 600.31 159.20 132.78 385.31 498.55 263.61 579.24 188.70 258.27 156.21 313.46 113.59 168.85 5 454885 Transcript 1 0.00 8.22 39.56 31.13 8.23 2.38 6.09 25.06 19.33 25.17 126.66 0.00 25.00 33.96 56.49 22.64 21.32 18.45 34.64 11.89 50.60 5.27 16.30 6 392433 Transcript 0 33.30 8.41 52.11 32.51 12.61 35.14 18.50 25.80 20.99 38.56 26.76 5.93 4.81 50.27 45.76 35.91 26.30 36.52 23.91 13.64 28.65 12.74 22.95 7 357866 Transcript 0 7.11 6.02 24.91 20.21 1.61 2.90 0.00 15.12 5.31 16.00 3.71 3.15 0.00 12.13 13.97 16.41 6.73 14.26 2.40 4.44 0.00 0.00 1.79 8 IG35 Intergenic 0 12.98 3.57 18.22 6.41 3.28 15.11 7.43 11.74 10.64 14.68 12.53 5.43 6.12 6.75 20.98 14.06 2.89 8.52 12.84 12.68 11.97 1.10 3.60 9 IG35_AR1 ActiveIntergenicRegion 0 13.06 3.60 18.34 6.45 3.31 15.21 7.48 11.81 10.71 14.77 12.62 5.47 6.17 6.79 21.12 14.16 2.91 8.58 12.93 12.77 12.04 1.10 3.63 10 ER1a ExonRegion 0 9.62 2.97 9.94 1.71 4.87 13.27 3.69 4.34 4.24 8.75 9.03 0.61 2.28 5.76 12.94 3.23 0.98 12.24 7.46 4.12 7.00 3.47 3.38 11 E1_Ab KnownBoundary 0 14.00 2.63 10.61 9.46 8.40 10.56 2.03 8.30 16.35 6.80 24.64 0.00 0.00 33.02 22.25 8.12 9.54 15.55 13.18 7.29 19.21 6.06 8.54 12 ER1b ExonRegion 1 162.84 71.18 48.14 19.30 31.40 163.73 136.26 16.33 14.67 36.02 192.90 0.35 3.35 314.45 521.51 162.98 288.39 14.78 89.45 75.81 103.71 84.49 71.86 13 E1_Da NovelBoundary 1 623.22 261.80 185.42 177.17 183.62 356.78 333.08 92.38 74.22 163.32 185.42 0.00 19.64 131.32 249.71 211.65 251.89 218.96 305.89 147.01 159.32 74.77 348.45 14 E1a_E2b KnownJunction 1 563.06 183.26 197.78 143.94 84.72 380.29 267.49 83.30 78.67 136.32 366.36 0.00 13.64 442.70 873.23 441.94 679.29 68.44 228.15 224.48 215.11 165.51 214.35 15 I1 Intron 0 30.41 16.07 0.00 0.00 5.77 18.44 28.53 0.00 0.00 0.00 22.21 2.56 3.37 24.22 23.41 27.75 30.82 1.33 45.76 13.75 25.33 13.47 27.42 16 I1_AR1 ActiveIntronRegion 0 31.26 16.50 0.00 0.00 5.89 18.98 29.36 0.00 0.00 0.00 22.83 2.64 3.47 24.93 24.01 28.52 31.67 1.37 47.00 14.15 26.06 13.86 28.13 17 ER2a ExonRegion 0 13.84 6.27 26.73 11.83 4.04 19.91 8.27 9.29 12.38 20.63 11.35 1.70 2.32 27.93 20.65 10.23 10.09 18.91 13.61 5.25 22.16 7.52 23.47 18 E2_Ab KnownBoundary 0 37.86 8.68 35.84 14.18 12.39 12.83 4.50 13.72 10.04 25.20 8.90 5.55 6.82 33.79 6.30 8.37 9.54 32.38 0.00 3.26 31.82 11.63 15.96 19 E2_Ac KnownBoundary 0 64.46 23.68 145.62 56.00 3.74 58.83 43.32 47.15 39.81 89.96 44.91 5.70 13.47 58.74 55.38 47.08 82.28 49.25 46.40 52.48 63.88 32.94 30.99 20 ER2b ExonRegion 1 279.19 125.16 147.27 54.64 41.35 251.40 166.94 49.18 40.98 98.53 254.09 14.17 23.45 373.25 577.09 302.08 470.53 62.49 154.06 153.96 185.11 140.35 146.03 21 ER2c ExonRegion 1 185.90 99.45 364.36 260.91 62.22 127.75 103.38 179.92 123.95 291.05 557.07 137.24 143.86 333.73 401.39 209.70 491.57 226.39 266.58 174.42 384.18 131.66 163.40 22 E2_Da KnownBoundary 1 91.13 112.87 402.53 385.40 79.12 124.81 74.99 176.62 114.70 266.71 390.20 149.00 92.20 360.94 335.13 182.17 407.20 241.05 262.78 215.27 321.55 132.14 208.29 23 E2a_E2d KnownJunction 1 0.00 8.22 39.56 31.13 8.23 2.38 6.09 25.06 19.33 25.17 126.66 0.00 25.00 33.96 56.49 22.64 21.32 18.45 34.64 11.89 50.60 5.27 16.30 24 E2a_E2e KnownJunction 1 101.65 58.15 342.89 193.65 27.08 54.00 77.99 139.20 84.84 198.97 600.31 159.20 132.78 385.31 498.55 263.61 579.24 188.70 258.27 156.21 313.46 113.59 168.85 25 ER2d ExonRegion 0 108.58 104.08 394.35 347.95 59.43 137.09 50.87 181.59 121.15 262.64 284.37 188.27 100.91 428.52 518.27 267.31 298.08 265.52 347.69 197.81 234.13 165.29 262.96 26 E2_Db KnownBoundary 1 41.71 8.81 81.07 48.71 11.71 24.25 10.42 42.92 20.63 47.47 38.01 11.85 0.00 60.04 80.35 93.74 25.06 63.55 54.03 15.08 21.13 8.08 48.06 27 E2b_E2d KnownJunction 1 29.41 47.29 80.28 67.42 23.09 56.10 13.82 55.41 35.88 27.80 60.49 26.41 26.46 85.35 175.29 55.71 11.22 92.11 101.37 35.79 42.01 9.06 76.66 28 E2b_E2e KnownJunction 1 102.98 61.83 267.76 270.10 48.64 98.24 28.88 83.05 78.47 185.86 125.82 186.96 82.14 327.45 529.95 271.64 162.88 248.39 393.33 158.07 136.16 189.27 287.08 29 E2b_E2f KnownJunction 0 14.22 12.04 33.12 8.02 3.23 5.79 0.00 13.39 4.48 18.83 7.42 6.30 0.00 24.25 27.94 32.81 13.46 8.66 4.80 8.88 0.00 0.00 3.59 30 ER2e ExonRegion 0 52.76 10.54 77.48 53.19 21.17 50.37 28.73 42.31 29.61 56.49 42.16 10.16 7.29 72.61 70.88 61.60 42.51 54.13 34.22 22.04 35.14 17.96 22.42 31 E2_Ad KnownBoundary 0 106.91 6.12 65.08 61.13 25.47 31.29 38.47 61.08 28.56 61.65 23.11 7.65 7.14 65.04 74.17 84.00 22.25 27.48 21.93 15.40 26.44 5.82 8.54 32 E2_Ae KnownBoundary 1 228.04 81.63 184.23 165.81 63.58 171.89 86.25 80.96 85.62 96.27 114.61 87.78 56.17 232.92 315.35 176.88 77.70 132.44 164.33 93.89 129.73 28.53 89.20 33 ER2f ExonRegion 0 175.32 69.14 228.48 197.56 64.11 142.43 72.10 131.65 99.74 130.94 199.41 76.31 43.77 270.01 395.05 197.77 96.14 164.91 192.71 93.26 153.25 45.32 109.63 34 ER2g ExonRegion 0 556.51 260.70 805.29 646.92 231.61 272.72 248.10 382.41 268.57 474.35 772.37 520.32 286.32 901.41 1378.00 819.43 652.93 619.27 650.65 396.89 532.68 431.05 410.79 35 E2_Af KnownBoundary 0 498.09 384.01 867.68 716.06 380.39 397.27 391.15 395.26 257.03 463.56 820.42 680.17 365.89 884.87 1184.50 903.78 653.48 593.99 570.56 409.13 527.15 322.39 349.73 36 ER2h ExonRegion 0 264.72 346.74 531.56 469.17 432.68 547.91 597.19 239.71 158.47 320.45 769.79 535.46 277.34 879.98 939.98 479.49 560.74 365.52 367.88 317.74 488.99 263.30 237.34 37 E2_Dc KnownBoundary 0 115.06 63.80 36.28 48.41 227.08 174.39 102.02 28.55 19.99 20.98 169.78 133.24 91.23 131.32 160.08 66.82 123.89 27.69 80.85 49.54 61.47 82.42 67.95 38 E2c_E2g KnownJunction 0 0.00 0.00 16.71 32.40 0.00 0.00 0.00 16.84 6.13 13.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.86 0.00 0.00 0.00 0.00 0.00 39 E2_Ag KnownBoundary 0 318.06 210.88 89.91 80.28 440.07 339.46 322.92 54.71 29.48 49.24 465.22 198.51 98.86 351.46 427.22 291.12 391.96 90.82 257.33 220.13 262.43 218.66 143.58 40 ER2i ExonRegion 0 401.71 296.90 378.88 335.54 653.95 472.02 446.17 186.33 125.24 231.45 768.91 524.73 387.40 781.20 1125.69 400.64 572.38 313.75 383.52 284.25 413.86 362.95 216.72 41 ER2j ExonRegion 0 417.84 326.11 702.34 593.31 504.60 404.56 385.57 301.57 193.02 375.64 865.83 587.85 477.86 910.45 1374.63 534.40 631.75 601.49 480.02 422.87 561.52 438.64 301.82 42 E2_Dd KnownBoundary 0 508.46 382.76 1158.86 1028.67 280.22 326.40 329.37 490.05 303.96 575.52 845.69 626.00 623.17 825.95 1389.21 661.88 565.68 937.55 619.69 485.45 630.99 517.24 412.47 43 ER2k ExonRegion 0 452.51 256.52 1138.40 975.48 169.57 239.76 195.06 463.99 290.41 552.45 767.80 781.78 494.80 1265.10 1773.08 841.41 638.20 823.15 690.13 464.10 584.14 422.06 395.90 44 E2e_E3a KnownJunction 0 633.52 272.12 1303.30 1190.99 221.82 231.06 160.58 589.08 342.13 607.67 1071.01 516.62 243.33 1267.94 1964.16 881.99 811.69 755.20 919.56 590.53 629.51 527.16 359.63 45 ER3a ExonRegion 0 584.22 334.56 1161.28 948.51 266.79 254.16 229.87 574.63 369.04 676.11 1281.33 565.08 237.44 915.64 1496.81 728.01 923.90 753.83 690.67 550.13 865.26 517.16 338.30 46 ER3b ExonRegion 0 382.33 372.94 855.79 740.14 241.10 274.09 312.83 485.45 332.64 646.90 971.76 387.33 215.57 904.17 1369.81 619.26 658.29 644.86 489.41 444.38 605.55 401.23 316.95 47 E3b_E4a KnownJunction 0 464.90 421.24 1192.09 1215.33 416.64 422.94 504.03 613.48 402.86 726.35 904.86 332.66 195.28 985.00 1384.51 560.71 607.29 800.75 481.71 453.62 535.73 341.13 352.21 48 ER3c ExonRegion 0 351.48 388.01 1052.43 1014.62 311.10 349.16 387.13 544.46 367.57 676.21 964.65 302.77 223.25 944.59 1334.19 574.81 625.41 765.95 456.14 449.36 531.68 346.00 346.33 49 I3 Intron 0 48.37 16.15 44.01 53.77 29.46 33.73 21.22 21.89 11.03 22.15 19.66 3.58 3.34 20.92 30.23 26.51 9.20 27.77 20.86 18.09 10.13 12.77 9.00 50 I3_AR1 ActiveIntronRegion 0 48.50 16.20 44.13 53.92 29.54 33.82 21.27 21.95 11.06 22.21 19.72 3.59 3.34 20.98 30.31 26.58 9.22 27.84 20.92 18.13 10.16 12.81 9.03 51 ER4a ExonRegion 0 775.46 540.61 1224.50 1280.55 1022.48 734.51 793.30 586.09 402.35 719.76 1041.22 455.58 542.90 1436.23 2067.64 985.09 918.17 806.33 811.99 610.09 770.86 494.69 501.70 52 E4_Da KnownBoundary 0 115.80 75.91 308.74 273.89 85.23 64.39 112.00 102.19 53.18 118.70 64.49 30.01 27.43 120.73 177.02 90.92 72.18 121.29 101.74 59.19 54.80 38.27 41.83 53 E4a_E4b KnownJunction 0 389.85 301.26 741.96 737.24 682.77 367.91 495.64 392.50 270.02 570.25 770.35 250.73 299.82 804.41 1655.48 549.09 633.29 446.37 532.53 459.50 642.18 443.09 311.92 54 ER4b ExonRegion 0 95.84 64.38 197.25 174.77 96.52 86.08 73.56 71.92 53.00 109.92 72.06 20.70 27.74 96.36 138.34 112.00 62.88 83.49 57.30 66.48 34.61 35.52 28.01 55 E4_Ab KnownBoundary 0 135.28 55.65 137.34 98.72 84.72 61.95 50.52 60.99 48.41 90.82 38.80 6.30 6.82 78.76 108.17 79.12 34.50 34.78 30.49 64.43 30.46 20.45 20.06 56 ER4c ExonRegion 0 288.01 199.20 401.89 410.35 167.43 164.24 139.69 193.90 149.90 292.16 459.82 130.73 106.92 494.46 818.11 310.04 327.75 229.11 276.20 200.10 334.52 229.39 154.89 57 ER4d ExonRegion 0 34.39 20.34 11.64 23.17 20.07 42.18 26.48 10.37 9.26 14.34 24.64 4.33 0.00 53.60 63.10 14.86 20.63 12.47 14.33 7.98 12.12 5.21 7.34 58 ER4e ExonRegion 0 1.59 0.51 1.23 4.77 2.68 3.67 0.99 3.02 2.16 4.01 2.42 0.00 0.00 2.84 5.08 2.23 1.65 1.39 0.80 2.13 0.55 1.04 0.00