Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CHST11 Gene 0 28.06 18.94 39.81 13.46 28.55 32.51 26.74 37.01 26.96 17.13 123.79 98.45 131.39 213.04 121.52 138.20 202.85 57.53 12.18 45.99 53.12 81.92 75.88 2 303694 Transcript 0 14.33 5.42 25.48 7.91 19.65 20.43 11.28 24.18 17.42 10.37 86.37 42.02 45.02 137.00 69.88 83.19 143.71 42.14 5.18 34.22 35.75 46.12 45.03 3 IG19_SR2 SilentIntergenicRegion 0 0.00 0.88 1.47 1.36 0.00 0.00 1.44 2.44 1.48 0.00 2.27 9.79 15.09 3.81 0.00 1.23 2.80 0.00 0.14 2.54 0.00 3.94 2.30 4 IG19_SR7 SilentIntergenicRegion 0 2.96 0.71 1.34 0.71 2.97 1.75 2.75 0.00 2.55 0.66 7.32 4.24 7.00 5.15 10.93 10.50 6.24 0.00 0.00 0.58 1.45 0.00 0.54 5 ER1a ExonRegion 0 1.49 0.00 0.66 0.00 1.08 0.62 4.02 0.95 1.33 0.66 21.47 1.20 6.93 25.98 8.97 29.52 44.97 2.66 1.10 5.31 16.58 3.59 7.08 6 E1_Da NovelBoundary 1 3.33 0.00 2.75 0.00 0.00 4.66 0.00 2.42 10.10 5.56 44.59 0.00 0.00 40.56 32.26 15.98 77.70 19.23 0.00 14.57 33.79 2.51 33.63 7 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.32 0.00 0.00 0.00 0.00 0.00 8 I1 Intron 1 5.93 2.28 5.12 0.00 0.00 6.17 2.23 2.89 5.16 2.87 29.27 6.14 26.44 71.69 37.30 96.64 75.88 14.94 12.50 9.54 18.55 5.84 75.77 9 I1_AR1 ActiveIntronRegion 1 6.00 2.30 5.15 0.00 0.00 6.23 2.25 2.92 5.21 2.91 29.59 6.21 26.68 72.49 37.72 97.72 76.73 15.11 12.64 9.65 18.76 5.90 76.61 10 E2_Aa NovelBoundary 0 3.19 0.00 15.76 6.03 6.88 30.49 7.99 24.77 20.86 14.42 48.91 13.95 46.59 82.76 8.90 84.42 131.93 53.31 20.24 23.01 45.47 28.72 32.18 11 ER2a ExonRegion 0 13.99 4.33 28.71 8.20 13.16 13.67 13.77 18.81 20.97 12.99 80.99 31.54 33.01 148.46 67.44 93.16 157.29 39.44 6.25 28.60 37.90 43.91 41.61 12 E2_Da NovelBoundary 0 13.71 0.00 16.35 5.56 19.19 5.34 5.96 10.47 3.73 1.02 5.00 0.00 23.21 9.54 21.01 31.02 21.04 4.48 0.00 3.26 0.00 0.00 0.00 13 E2a_E3a KnownJunction 0 12.59 0.00 29.21 2.06 23.60 17.94 6.09 22.14 18.92 4.78 70.44 41.86 18.18 105.25 31.15 47.42 107.34 28.73 0.00 33.17 22.92 36.62 20.40 14 I2_SR1 SilentIntronRegion 0 12.31 1.40 4.30 1.66 6.19 3.36 3.93 4.00 4.92 2.13 5.11 3.70 6.39 12.59 13.01 25.17 19.83 3.83 1.65 2.78 1.14 0.00 2.45 15 I2_AR2 ActiveIntronRegion 0 10.56 1.71 5.15 1.06 3.49 3.25 4.34 5.15 4.86 1.35 5.46 3.05 4.94 6.05 18.44 21.01 16.27 5.86 1.24 3.42 1.54 0.65 4.66 16 Ix Intron 0 44.47 4.93 14.51 7.02 19.82 3.13 17.90 8.82 9.86 3.70 3.96 11.32 14.65 3.35 9.82 20.75 26.34 4.19 2.40 6.24 1.77 0.82 4.86 17 Ix_SR1 SilentIntronRegion 0 49.93 5.40 15.20 7.19 20.18 3.25 17.95 9.12 10.66 3.88 3.73 10.85 14.35 3.38 9.55 19.96 24.89 4.45 2.43 6.25 1.82 0.75 4.55 18 Ix_AR2 ActiveIntronRegion 0 19.15 3.47 11.97 8.25 19.29 2.89 19.79 8.78 7.72 2.69 5.32 13.59 15.52 3.56 11.28 26.11 32.89 3.50 3.34 7.25 1.15 0.55 7.32 19 Ix_SR2 SilentIntronRegion 0 23.09 1.66 10.46 2.22 16.05 2.00 13.36 4.92 3.51 3.26 4.22 13.03 16.93 2.55 10.47 20.26 32.41 2.01 0.00 4.06 2.40 2.27 4.00 20 I2_SR1 SilentIntronRegion 0 14.19 0.82 3.41 2.57 6.70 0.76 13.93 4.87 5.61 2.30 1.90 13.07 15.39 2.00 5.02 13.91 21.88 3.31 1.89 6.12 2.77 0.54 6.15 21 I2_AR1 ActiveIntronRegion 0 19.69 2.68 4.09 2.88 8.51 0.59 14.21 5.22 8.16 1.41 3.18 7.84 13.25 2.47 7.69 15.77 27.30 2.26 0.42 3.87 2.15 0.27 5.23 22 I2_AR2 ActiveIntronRegion 1 16.06 4.07 7.42 1.36 0.00 0.00 2.49 8.64 3.34 0.00 0.00 1.78 9.38 1.05 2.90 6.82 41.16 9.13 0.00 6.26 3.37 0.00 0.00 23 I2_AR3 ActiveIntronRegion 0 11.09 2.40 4.75 1.14 4.27 1.70 14.07 12.40 5.12 0.29 2.69 6.32 22.62 1.37 12.79 22.53 28.94 5.14 1.48 2.79 3.85 0.00 11.12 24 I2_AR4 ActiveIntronRegion 0 14.86 2.43 6.34 2.23 3.66 1.37 11.41 6.16 2.92 0.16 1.16 8.91 19.32 2.17 7.18 12.25 22.10 0.69 0.38 5.04 1.15 0.00 6.66 25 I2_SR2 SilentIntronRegion 0 9.82 0.74 2.43 2.31 4.06 3.71 16.91 4.32 4.28 0.97 0.89 18.92 15.34 1.73 3.21 14.37 27.20 1.27 0.73 5.18 0.00 0.48 8.72 26 I2_SR3 SilentIntronRegion 0 13.08 1.57 2.75 2.16 6.22 1.65 10.71 3.38 3.48 0.84 1.82 8.46 10.98 2.37 5.78 12.95 18.60 2.26 0.98 3.45 1.98 0.31 4.59 27 I2_AR8 ActiveIntronRegion 0 9.98 1.46 10.63 3.73 18.15 6.46 10.33 4.81 9.42 2.97 4.79 0.00 13.56 0.95 9.15 28.56 31.14 2.61 0.00 6.20 1.39 0.00 10.41 28 I2_SR5 SilentIntronRegion 0 11.88 1.35 3.06 2.99 7.75 1.97 14.40 5.27 4.45 1.64 1.39 9.60 10.31 2.64 6.19 13.88 20.66 2.54 0.97 4.48 1.52 0.31 5.08 29 I2_AR17 ActiveIntronRegion 0 32.93 3.79 3.40 4.42 6.72 0.80 17.95 4.45 1.71 2.75 2.25 12.30 26.96 4.03 10.21 21.02 29.04 4.39 1.11 6.61 1.79 0.73 7.77 30 I2_AR18 ActiveIntronRegion 0 18.68 2.91 3.15 5.78 13.67 0.19 13.53 3.04 3.56 0.70 1.35 14.21 14.73 2.30 4.30 11.24 9.45 2.78 0.33 3.48 0.45 0.21 2.63 31 I2_SR10 SilentIntronRegion 0 10.48 1.65 2.48 2.63 6.02 0.65 10.16 4.26 2.53 1.35 0.81 8.99 10.58 3.12 5.48 15.98 17.75 4.39 0.33 4.66 3.22 0.30 5.71 32 I2 Intron 0 14.04 2.25 3.45 4.06 9.23 1.38 12.79 4.93 3.85 2.14 1.51 11.10 13.06 4.05 5.49 17.20 18.33 4.39 1.05 4.96 2.37 0.56 6.01 33 I2_SR1 SilentIntronRegion 0 11.29 1.42 2.10 2.77 6.28 0.64 12.61 2.87 3.27 2.04 1.50 11.85 16.91 3.97 5.06 16.54 19.10 3.60 0.62 5.26 2.31 0.44 6.12 34 I2_AR2 ActiveIntronRegion 0 13.53 2.59 2.30 4.03 16.51 1.56 16.84 7.26 3.00 1.97 2.50 20.75 11.76 5.40 3.63 22.55 21.26 1.02 1.16 6.45 1.83 0.76 4.47 35 I2_SR3 SilentIntronRegion 0 18.61 3.36 5.02 5.42 12.93 2.32 13.00 7.50 4.58 2.29 1.45 9.90 10.61 4.17 6.17 17.77 17.34 5.16 1.59 4.71 2.26 0.68 5.98 36 I2_AR1 ActiveIntronRegion 0 13.04 0.89 4.96 5.59 4.20 0.68 10.54 3.96 4.20 2.60 0.54 11.69 4.01 1.89 4.81 15.20 16.84 6.08 0.31 2.64 2.86 0.86 5.22 37 ER3a ExonRegion 0 21.21 4.52 39.14 13.39 24.70 35.25 15.50 32.06 31.47 13.39 147.60 52.76 46.90 202.17 109.03 109.04 211.30 67.44 5.26 53.81 56.53 58.85 67.37 38 E3_Da NovelBoundary 0 13.93 0.00 3.05 0.00 7.98 0.00 15.46 7.56 5.93 0.00 0.00 13.80 6.17 0.00 14.59 8.54 25.99 2.03 4.61 2.88 6.30 2.63 0.00 39 E3a_E4a KnownJunction 0 15.85 3.35 33.20 15.32 39.13 34.81 6.14 49.12 17.94 20.31 139.09 37.21 34.09 224.38 123.25 138.51 251.99 86.35 8.19 64.05 55.23 77.46 85.53 40 I3_AR1 ActiveIntronRegion 0 10.54 3.07 2.34 3.12 10.39 2.47 13.09 4.47 5.07 1.77 1.38 7.34 10.32 2.18 6.46 19.67 22.73 2.82 1.20 5.96 2.77 1.57 6.36 41 I3_SR1 SilentIntronRegion 0 16.75 3.88 2.16 0.49 7.79 3.54 16.35 4.25 4.17 3.40 0.66 9.87 21.80 2.49 8.74 16.75 22.94 7.72 0.89 11.68 4.52 1.17 11.46 42 I3_SR2 SilentIntronRegion 0 16.36 2.16 3.16 1.72 12.92 1.71 17.06 9.47 6.35 2.04 1.98 21.67 26.79 3.76 7.33 22.85 22.96 4.49 3.68 6.91 4.33 1.11 8.17 43 I3_AR2 ActiveIntronRegion 1 26.05 7.41 3.36 4.96 18.79 1.35 19.73 11.65 5.09 5.13 1.56 21.13 31.60 5.92 5.18 25.12 28.14 5.24 1.21 11.80 1.36 0.79 12.73 44 I3_AR3 ActiveIntronRegion 1 76.19 4.65 4.90 5.45 26.76 7.34 33.86 9.88 7.23 3.60 1.93 43.91 61.64 3.94 14.51 59.87 50.93 10.29 0.00 13.07 5.67 2.08 30.21 45 I3_AR4 ActiveIntronRegion 0 21.57 4.06 3.00 5.17 13.42 2.57 14.06 7.18 4.20 1.86 1.70 10.22 18.21 3.69 9.20 23.12 25.70 5.29 3.44 3.91 4.17 0.18 8.86 46 I3_SR3 SilentIntronRegion 0 13.76 1.75 1.26 2.29 14.90 0.97 14.56 1.89 2.77 0.56 0.58 9.86 6.72 4.15 5.89 11.01 13.65 1.39 2.19 4.81 2.01 1.28 2.86 47 I3_AR5 ActiveIntronRegion 0 18.56 0.84 2.66 5.68 9.39 3.65 15.03 5.97 4.47 1.07 2.00 3.85 5.18 2.60 9.01 19.82 16.88 5.52 1.10 7.74 6.12 0.00 3.52 48 I3_SR4 SilentIntronRegion 0 53.66 3.69 6.07 8.20 17.00 3.65 15.49 12.52 4.36 3.92 1.83 0.67 10.49 3.72 22.49 23.46 31.98 8.44 4.46 3.29 4.16 0.29 10.90 49 I3_AR6 ActiveIntronRegion 0 63.16 5.85 5.12 8.54 38.54 6.51 22.67 12.74 5.40 2.04 1.55 8.63 18.03 3.66 21.55 18.87 22.47 5.05 0.49 6.02 2.78 0.32 7.93 50 I3_SR5 SilentIntronRegion 0 23.84 2.19 2.80 4.69 13.99 2.59 13.92 6.46 2.95 2.12 0.83 4.56 7.47 3.28 6.70 12.75 19.82 2.75 1.62 2.22 3.18 0.55 6.09 51 I3_AR7 ActiveIntronRegion 0 11.59 2.18 2.73 4.17 13.68 3.61 17.88 5.47 5.67 2.19 1.36 9.37 12.38 4.49 9.16 16.39 17.03 2.71 2.32 3.96 2.95 0.00 5.72 52 I3_SR6 SilentIntronRegion 0 11.99 1.77 2.20 3.26 6.98 1.38 14.50 5.09 4.40 1.75 1.29 11.10 14.38 2.89 6.56 15.17 22.22 2.67 1.62 3.89 3.16 0.61 6.69 53 I3_AR9 ActiveIntronRegion 1 11.73 2.96 3.01 1.67 5.66 0.00 22.05 3.75 4.98 4.00 0.00 39.09 29.75 0.00 8.54 17.41 20.65 1.85 4.37 1.34 2.20 0.00 3.86 54 I3_SR7 SilentIntronRegion 0 12.03 0.19 2.11 1.36 3.32 0.75 13.58 4.67 6.66 4.04 2.94 31.67 26.32 0.00 1.18 10.68 17.36 0.34 6.19 3.47 0.08 0.00 5.22 55 I3_AR11 ActiveIntronRegion 1 13.88 1.08 3.68 0.00 3.93 2.86 10.79 4.73 6.18 6.68 0.00 26.36 27.04 0.76 7.42 6.03 13.49 1.20 3.19 4.94 1.43 0.00 1.47 56 I3_AR12 ActiveIntronRegion 1 12.70 0.00 3.68 0.00 2.68 1.83 13.90 3.46 4.94 3.44 0.00 25.98 26.58 3.25 8.22 2.97 6.60 1.85 3.19 8.51 2.20 2.08 0.00 57 I3_SR8 SilentIntronRegion 0 16.09 1.41 2.54 2.33 5.28 1.31 10.27 3.94 2.95 1.47 0.84 9.77 12.20 2.53 6.20 13.10 16.66 2.12 1.39 3.64 2.78 0.51 5.86 58 I3_AR14 ActiveIntronRegion 0 3.72 1.74 5.59 3.29 8.09 6.35 24.61 0.63 1.75 1.06 0.05 0.00 0.00 7.21 3.89 8.19 21.42 4.55 0.00 4.57 6.50 0.91 9.10 59 I3_SR9 SilentIntronRegion 0 13.81 2.48 3.75 4.39 5.25 4.59 10.00 3.77 4.12 0.81 0.47 6.26 8.29 3.41 9.84 11.90 20.48 1.42 1.94 3.16 3.65 0.47 6.68 60 I3_AR15 ActiveIntronRegion 0 16.89 0.99 2.68 1.75 1.43 0.60 6.01 3.78 0.33 1.11 0.80 8.05 8.03 2.19 4.82 13.31 13.67 1.95 1.26 0.69 2.87 1.02 2.48 61 I3_AR16 ActiveIntronRegion 0 20.26 1.16 8.21 4.62 7.92 6.11 14.59 4.03 5.49 2.90 1.22 8.49 14.64 4.28 9.18 20.05 26.50 3.94 1.65 6.20 5.25 0.87 7.25 62 I3_SR11 SilentIntronRegion 0 11.67 0.76 1.97 2.03 4.37 1.12 9.04 3.62 2.39 1.01 0.71 9.19 10.52 2.38 4.78 12.31 17.83 1.92 1.07 3.22 2.30 0.15 5.09 63 I3_AR18 ActiveIntronRegion 0 9.57 0.00 0.00 0.56 2.50 0.34 7.45 2.26 1.47 0.00 1.06 19.86 3.19 3.68 9.48 9.27 30.41 1.36 0.21 2.70 1.50 0.00 5.83 64 I3_AR19 ActiveIntronRegion 1 11.57 0.00 0.00 0.00 4.82 3.67 10.15 3.46 1.73 0.00 0.00 38.10 15.63 4.87 4.06 3.76 22.01 2.59 4.03 2.13 0.00 0.00 2.15 65 I3_AR20 ActiveIntronRegion 1 10.48 0.00 1.16 0.00 5.08 7.24 7.15 6.57 2.16 0.00 0.10 25.11 19.93 1.22 5.80 8.17 24.43 5.54 6.37 1.49 0.00 0.00 6.46 66 I3_AR21 ActiveIntronRegion 0 13.72 1.30 1.21 1.79 5.33 0.18 9.22 8.51 8.06 3.87 1.32 10.77 16.17 2.92 6.34 15.34 19.33 3.10 0.62 4.66 3.25 1.42 7.10 67 I3_AR24 ActiveIntronRegion 0 16.25 0.90 2.98 0.76 2.91 0.67 6.00 6.67 4.22 3.06 1.60 11.09 13.72 4.61 10.00 12.45 22.39 2.31 1.16 4.47 4.31 0.00 8.14 68 I3_SR15 SilentIntronRegion 0 13.51 1.99 2.28 2.57 9.43 1.52 9.52 4.44 2.82 1.48 1.12 11.53 11.42 2.31 6.57 11.60 16.39 2.32 1.06 3.47 2.15 0.66 5.33 69 I3_AR27 ActiveIntronRegion 0 13.01 5.24 1.75 2.92 9.42 0.53 5.94 2.97 2.79 2.79 1.46 8.19 4.24 3.43 5.38 10.47 10.77 1.85 1.22 2.45 2.12 0.20 5.05 70 I3_AR31 ActiveIntronRegion 0 10.58 4.07 2.45 1.36 0.00 1.83 3.97 1.73 3.71 1.15 7.73 4.33 4.69 1.62 5.80 5.94 19.81 0.00 0.00 4.26 0.00 0.00 2.94 71 I3_SR16 SilentIntronRegion 0 37.42 3.82 6.77 2.62 14.40 3.76 6.89 5.69 1.87 2.02 2.05 13.20 9.34 3.86 11.02 19.86 13.59 4.35 0.98 4.33 5.19 1.28 6.74 72 I3_AR34 ActiveIntronRegion 0 51.97 4.16 8.15 3.11 17.84 3.18 6.41 6.76 1.97 2.61 2.05 11.63 9.16 3.96 12.77 15.88 14.64 4.14 0.50 5.96 3.79 1.31 7.38 73 ER4a ExonRegion 0 35.20 25.76 47.46 16.41 35.87 40.70 33.45 46.18 31.31 20.48 144.99 129.58 176.02 252.78 149.29 164.67 233.06 68.02 15.47 54.62 61.06 102.40 93.19 74 IG20_AR1 ActiveIntergenicRegion 0 11.62 11.93 12.70 11.32 30.88 37.01 22.30 12.76 14.49 10.08 53.46 96.42 76.20 86.81 24.24 56.76 80.20 22.06 9.49 25.54 25.66 50.40 56.58 75 IG20_SR1 SilentIntergenicRegion 0 3.40 12.29 2.77 0.65 6.17 18.98 9.27 3.31 3.17 0.55 11.35 28.24 25.29 50.35 11.35 4.14 20.09 8.36 0.00 2.22 5.56 3.26 2.94 76 IG20_AR2 ActiveIntergenicRegion 0 53.28 34.69 37.03 21.34 52.51 41.73 27.97 30.82 17.68 17.74 78.18 119.45 92.23 96.00 77.20 97.06 96.95 36.21 9.91 32.91 38.97 69.88 75.78 77 IG20_AR3 ActiveIntergenicRegion 0 18.38 56.02 29.52 52.68 67.97 107.94 51.59 86.21 70.13 56.75 7.88 37.47 60.01 11.23 24.35 6.79 10.11 2.03 0.58 15.62 4.43 24.38 5.21