Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ABCB9 Gene 0 8.97 14.27 39.08 33.01 11.02 19.75 18.23 32.01 20.78 35.83 3.32 35.15 21.51 35.06 157.66 57.58 11.44 39.35 17.73 24.13 19.66 9.19 11.38 2 392439 Transcript 0 0.33 1.27 2.28 3.40 1.53 2.29 2.06 4.23 1.63 1.69 1.10 0.00 0.00 1.28 1.52 2.78 1.54 1.48 2.65 1.99 5.10 0.43 0.15 3 442833 Transcript 0 0.00 3.60 7.99 1.22 0.00 3.36 1.57 6.52 1.08 3.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 1.00 4.61 2.11 0.00 2.81 4 344275 Transcript 0 7.04 5.55 16.10 14.30 8.38 14.96 11.28 6.92 9.57 15.47 0.00 0.76 0.00 3.86 10.67 7.39 0.33 3.51 1.57 5.42 3.35 0.82 2.65 5 280560 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 346530 Transcript 0 0.00 0.00 5.77 5.19 0.00 0.00 0.00 8.87 1.30 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 7 442028 Transcript 0 1.28 0.67 2.30 4.54 2.90 0.53 0.31 1.89 2.06 1.35 0.05 0.24 0.13 0.36 0.16 0.04 0.14 2.73 0.26 1.02 3.05 0.31 5.19 8 ER1a ExonRegion 0 0.66 2.53 4.55 4.74 3.06 4.58 4.13 6.48 3.25 3.37 2.21 0.00 0.00 2.56 3.05 5.56 3.09 2.96 5.29 3.98 7.49 0.87 0.31 9 E1_Da NovelBoundary 0 9.26 12.50 9.37 11.32 3.90 8.92 1.99 14.91 7.87 5.69 0.00 0.00 0.00 7.18 9.39 0.00 0.00 4.81 0.00 7.93 13.96 0.00 15.62 10 E1a_E3a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 1.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.72 0.00 0.00 11 I1_SR1 SilentIntronRegion 0 7.31 11.65 6.89 9.27 5.35 7.63 9.61 18.98 9.02 6.15 5.00 5.33 3.81 2.41 5.65 0.73 0.80 8.40 7.16 11.70 12.78 0.77 5.09 12 ER2a ExonRegion 0 0.00 5.64 11.31 9.61 5.70 15.11 8.94 13.60 4.67 11.53 0.94 0.00 0.00 2.42 3.08 3.37 2.83 36.35 8.04 15.38 7.29 0.97 14.91 13 E2a_E3a KnownJunction 0 0.00 2.50 22.56 13.62 3.99 7.04 3.80 25.26 23.76 19.02 2.00 0.00 0.00 4.94 0.00 0.00 4.11 14.38 0.00 21.86 5.56 4.90 3.50 14 ER3a ExonRegion 0 0.34 6.46 36.68 19.49 7.90 17.18 12.93 29.30 21.47 36.83 1.84 0.42 0.67 7.94 6.01 7.00 3.24 43.93 14.94 31.20 22.25 4.52 13.19 15 E3_Da NovelBoundary 0 0.00 5.92 6.62 12.39 3.31 2.90 1.85 4.35 6.22 5.61 0.00 0.00 0.00 0.00 0.00 4.27 0.00 19.73 7.91 21.60 2.72 2.76 3.59 16 E3a_E4a KnownJunction 0 3.04 5.59 26.46 31.16 6.71 32.48 25.31 23.99 24.28 28.63 4.53 6.30 6.82 0.00 0.00 8.54 8.70 28.81 14.40 9.78 21.99 6.00 7.09 17 I3 Intron 0 5.10 15.84 13.05 15.27 7.63 7.97 11.29 11.96 7.05 14.57 0.52 0.61 1.44 1.40 1.55 2.77 1.30 15.39 8.45 14.64 3.90 1.59 3.32 18 I3_AR1 ActiveIntronRegion 0 4.69 25.28 26.39 28.81 7.40 7.90 14.53 27.32 12.47 23.57 0.82 0.00 1.78 1.64 2.67 2.74 1.01 21.15 16.64 17.43 7.21 1.92 4.51 19 I3_SR2 SilentIntronRegion 0 3.19 14.62 12.51 9.17 5.37 7.67 5.31 8.18 4.00 11.43 0.00 0.60 0.65 1.36 1.85 0.50 0.55 17.66 2.13 8.89 4.05 1.05 2.95 20 E4_Aa NovelBoundary 0 3.63 32.36 22.47 31.16 11.29 13.57 2.08 13.39 5.56 22.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.32 0.00 18.28 0.00 0.00 4.18 21 ER4a ExonRegion 0 7.86 15.44 58.57 46.52 14.38 30.94 26.38 39.51 30.81 53.53 6.49 0.68 4.08 7.30 4.97 8.63 5.37 44.25 19.75 39.43 19.81 8.28 12.26 22 E4_Da NovelBoundary 0 0.00 3.22 25.22 6.99 3.14 4.94 0.00 4.56 0.00 3.06 0.00 0.00 0.00 0.00 4.45 0.00 0.00 14.18 4.33 2.94 0.00 0.00 4.35 23 E4a_E5a KnownJunction 0 0.00 8.16 41.78 35.36 3.90 16.64 23.36 12.73 21.33 33.28 2.68 0.00 6.17 9.59 0.00 4.27 12.44 32.75 0.00 14.89 10.50 5.94 4.35 24 E4a_E5b KnownJunction 0 6.74 12.56 28.33 22.91 4.07 24.59 8.52 7.19 12.88 18.19 0.00 0.00 0.00 7.30 0.00 3.59 0.00 8.62 0.00 7.80 3.09 0.00 4.35 25 E5_Ab NovelBoundary 0 2.82 26.90 36.57 16.65 11.38 10.22 17.36 11.46 16.29 22.05 0.00 0.00 0.00 4.47 4.45 3.85 0.00 27.73 48.38 12.08 7.72 0.00 0.00 26 ER5a ExonRegion 0 2.68 18.03 40.52 23.62 6.24 20.42 23.04 12.91 19.27 30.43 1.93 0.00 5.32 8.34 2.13 6.54 6.60 30.06 19.96 19.15 10.72 4.31 3.52 27 ER5b ExonRegion 0 11.68 34.31 83.37 74.07 21.52 43.65 38.74 68.63 44.34 75.40 4.27 1.23 3.27 18.36 10.43 10.86 7.00 71.70 49.57 52.64 28.80 19.52 11.80 28 E5_Da NovelBoundary 0 3.41 5.85 28.59 25.01 0.00 0.00 10.29 6.74 4.69 8.62 2.68 0.00 0.00 0.00 0.00 0.00 0.00 19.86 0.00 16.75 10.63 2.51 7.85 29 E5a_E6a KnownJunction 0 3.78 9.74 81.61 53.41 19.86 26.97 18.72 65.18 42.10 64.55 7.26 6.00 0.00 14.77 4.45 11.88 21.41 43.19 43.77 33.11 29.41 14.51 8.02 30 E6_Aa NovelBoundary 0 0.00 9.08 4.79 7.89 0.00 5.28 13.87 16.55 4.80 3.12 2.68 0.00 0.00 0.00 0.00 0.00 4.77 7.92 8.47 8.82 9.33 0.00 3.33 31 ER6a ExonRegion 0 6.36 26.51 92.90 63.48 24.65 35.28 31.07 62.95 43.22 60.02 5.42 2.33 5.26 14.10 9.03 19.12 7.29 54.53 35.60 45.36 33.95 13.42 13.43 32 E6_Da NovelBoundary 0 3.63 4.87 10.47 4.10 3.40 5.62 15.46 1.85 4.77 4.65 0.00 0.00 0.00 0.00 0.00 0.00 8.13 16.95 19.29 14.89 0.00 0.00 0.00 33 E6a_E7a KnownJunction 0 11.11 21.44 121.52 74.75 36.42 43.27 40.98 66.66 35.36 64.04 10.53 6.00 12.17 17.19 15.70 24.18 0.00 53.77 25.22 42.50 25.95 11.51 0.00 34 I6_SR2 SilentIntronRegion 0 0.71 4.28 7.46 6.50 5.00 3.19 5.68 6.88 5.58 8.34 0.54 0.88 0.43 1.62 2.31 4.05 2.21 15.59 7.66 8.26 4.42 1.35 2.80 35 ER7a ExonRegion 0 8.26 31.89 75.70 63.46 21.45 33.15 33.07 47.69 30.09 62.13 5.81 1.84 3.53 15.98 12.54 15.46 10.04 72.86 32.50 43.53 27.31 12.62 12.83 36 E7a_E8b KnownJunction 0 10.74 20.92 46.72 64.53 4.33 17.83 31.27 61.41 24.07 56.46 5.37 0.00 0.00 17.48 14.83 7.95 8.51 69.27 17.69 15.08 21.00 20.15 19.29 37 E7a_E9a KnownJunction 0 0.00 0.00 5.77 5.19 0.00 0.00 0.00 8.87 1.30 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 38 ER8a ExonRegion 0 1.28 0.67 2.30 4.54 2.90 0.53 0.31 1.89 2.06 1.35 0.05 0.24 0.13 0.36 0.16 0.04 0.14 2.73 0.26 1.02 3.05 0.31 5.19 39 E8_Ab KnownBoundary 0 3.63 2.96 6.39 1.80 6.62 2.38 0.00 2.55 1.56 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.00 7.73 2.53 0.00 4.35 40 ER8b ExonRegion 0 8.25 23.15 59.93 50.05 16.03 21.27 25.35 49.38 27.55 55.60 6.13 2.71 4.80 16.05 9.50 15.70 6.76 67.46 25.18 34.72 27.13 14.06 15.83 41 E8a_E9a KnownJunction 0 13.41 5.39 31.76 41.75 12.22 11.87 20.45 55.70 21.73 41.47 6.58 0.00 6.66 21.13 18.79 7.95 8.23 44.36 31.53 18.28 20.14 11.94 7.34 42 E8a_E10a KnownJunction 0 10.52 3.22 17.42 17.31 21.05 17.89 21.64 12.82 15.77 24.66 0.00 0.00 0.00 2.35 0.00 8.54 0.00 0.00 4.71 5.94 6.05 2.45 3.59 43 ER9a ExonRegion 0 4.42 12.27 37.82 35.75 5.80 12.31 19.07 41.57 19.36 39.73 3.94 0.00 4.69 14.65 8.61 10.88 5.73 75.00 27.69 31.45 22.60 10.86 11.58 44 E9_Da NovelBoundary 0 0.00 0.00 3.52 0.00 0.00 0.00 0.00 1.89 4.25 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.50 0.00 0.00 9.45 0.00 0.00 45 E9a_E10a KnownJunction 0 0.00 16.90 47.22 49.54 3.65 11.02 15.72 41.73 22.83 37.85 2.68 0.00 6.49 14.13 10.75 16.58 4.58 82.20 34.35 37.52 20.20 7.65 8.45 46 ER10a ExonRegion 0 7.04 22.50 60.73 59.94 16.04 26.51 28.44 55.30 36.14 58.54 3.15 0.00 1.54 16.70 11.45 14.06 3.91 82.76 28.85 33.74 30.92 12.38 12.08 47 E10_Da KnownBoundary 0 0.00 6.64 16.97 4.99 0.00 11.19 3.58 11.99 1.79 10.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.39 3.76 14.76 5.87 0.00 8.45 48 E10a_E11a KnownJunction 0 6.22 20.79 69.25 72.62 19.69 11.07 29.50 57.13 29.63 53.35 0.00 0.00 0.00 9.48 26.45 30.25 8.60 76.77 25.13 18.79 19.27 15.12 11.01 49 E10a_E12a NovelJunction 0 0.00 0.00 0.00 1.53 0.00 17.15 0.00 0.00 0.00 4.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 ER10b ExonRegion 0 0.00 3.60 7.99 1.22 0.00 3.36 1.57 6.52 1.08 3.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 1.00 4.61 2.11 0.00 2.81 51 E10_Db NovelBoundary 0 0.00 9.80 13.25 3.46 8.66 2.90 9.94 3.98 1.79 9.19 0.00 0.00 0.00 0.00 6.30 0.00 0.00 7.34 4.52 8.37 0.00 0.00 0.00 52 ER11a ExonRegion 0 3.88 17.08 51.27 51.96 13.31 22.65 22.42 46.72 24.01 50.80 1.61 1.84 1.08 15.21 12.98 11.02 3.45 51.22 19.47 20.40 29.28 13.00 19.07 53 E11a_E12a KnownJunction 0 7.33 17.89 67.21 69.06 8.49 26.18 8.79 62.84 24.25 52.11 2.68 13.05 0.00 16.95 8.90 17.00 4.11 55.63 31.06 21.22 17.30 11.63 7.77 54 E12_Aa NovelBoundary 0 10.22 2.89 0.00 2.06 0.00 0.00 4.24 0.00 1.65 7.52 0.00 12.45 13.64 16.54 129.67 52.98 9.44 10.11 0.00 3.07 0.00 0.00 3.50 55 ER12a ExonRegion 0 11.62 17.04 54.18 38.77 8.36 18.07 17.80 45.17 22.95 53.32 4.13 35.93 16.02 57.66 294.30 104.72 19.76 47.60 20.67 27.78 23.85 12.00 26.69 56 E12_Da KnownBoundary 0 0.00 3.03 2.37 7.29 0.00 5.74 8.13 4.07 0.00 3.79 0.00 11.55 0.00 2.35 53.03 22.30 4.77 5.93 0.00 0.00 2.90 0.00 0.00 57 E12a_E13a KnownJunction 1 18.97 5.85 29.27 41.05 15.20 14.88 12.23 35.73 23.90 25.14 9.90 21.31 13.64 59.74 587.18 176.62 7.85 50.53 4.05 14.32 14.02 4.78 7.17 58 ER12b ExonRegion 0 3.86 0.87 2.57 2.68 0.00 2.40 3.67 0.76 0.07 3.56 0.00 2.27 0.00 1.91 32.02 10.05 0.98 1.91 0.00 2.51 0.89 0.00 0.00 59 I12 Intron 0 3.39 0.59 4.52 3.85 3.12 1.87 3.67 2.63 1.88 2.24 0.56 16.77 1.81 7.06 41.31 11.69 0.96 1.87 2.32 2.79 1.28 1.21 1.71 60 I12_SR1 SilentIntronRegion 0 4.55 0.00 6.20 4.33 4.61 2.37 4.56 3.33 2.38 3.31 0.83 24.44 1.72 9.85 47.23 14.07 0.71 2.37 3.43 2.75 1.90 1.79 1.26 61 E13_Aa NovelBoundary 0 26.23 0.00 2.96 6.66 0.00 8.46 1.90 2.55 6.54 3.68 0.00 6.60 6.82 14.72 58.10 15.12 0.00 10.90 4.14 2.68 0.00 0.00 3.24 62 ER13a ExonRegion 0 22.36 17.79 35.74 37.16 13.02 22.98 21.23 30.32 21.95 34.73 4.24 119.96 70.91 96.24 512.20 171.50 27.97 29.33 15.82 18.95 19.33 14.21 11.76 63 IG34 Intergenic 0 2.36 3.16 5.99 4.78 4.76 3.96 2.68 4.09 3.69 4.68 0.06 9.53 7.30 2.78 21.46 4.81 1.24 2.19 1.24 1.48 0.69 0.22 0.63 64 IG34_SR4 SilentIntergenicRegion 0 3.32 4.01 4.37 3.33 5.22 4.16 3.84 3.69 2.80 4.40 0.00 19.13 8.62 3.07 35.08 7.43 3.17 3.05 1.81 3.18 0.96 0.00 1.87 65 IG34_AR6 ActiveIntergenicRegion 0 1.69 1.50 8.70 3.43 3.03 1.93 2.64 3.52 2.01 1.35 0.00 13.14 3.05 1.59 20.38 6.86 1.74 3.14 2.51 2.14 1.16 0.00 1.86 66 IG34_SR3 SilentIntergenicRegion 0 1.55 3.34 3.32 2.37 4.02 3.41 2.78 3.00 1.58 2.37 0.16 13.24 6.75 2.25 23.58 4.85 2.28 0.90 0.39 1.31 0.54 0.17 0.12 67 IG34_AR5 ActiveIntergenicRegion 0 4.04 3.62 1.00 0.92 5.69 1.00 0.77 1.32 0.00 1.84 0.00 4.64 20.04 9.60 51.54 5.84 6.54 0.00 0.00 1.82 0.00 0.00 2.67 68 IG34_SR2 SilentIntergenicRegion 0 2.59 3.40 7.85 6.24 5.46 4.74 2.87 5.08 4.81 5.98 0.01 8.58 8.36 3.34 21.87 4.61 0.81 2.62 1.43 1.46 0.71 0.32 0.59 69 IG34_AR2 ActiveIntergenicRegion 0 0.00 4.07 4.90 3.83 5.25 3.81 4.07 2.46 4.89 0.57 0.00 3.50 3.25 0.00 12.39 2.29 3.30 0.00 0.00 0.00 0.00 0.00 0.00