Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FOXN4 Gene 0 0.59 2.51 8.67 1.70 33.62 16.33 9.63 57.41 8.60 102.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34.96 0.94 12.82 0.00 0.00 0.09 2 299162 Transcript 0 0.00 0.41 3.82 1.32 9.65 7.70 2.23 22.73 3.84 52.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.87 0.32 8.13 0.00 0.00 0.00 3 355216 Transcript 0 0.87 0.51 0.96 0.67 2.48 2.01 2.42 5.67 0.27 10.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.51 0.00 3.93 0.00 0.00 0.00 4 266856 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 423960 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 445449 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 468516 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 ER1a ExonRegion 0 0.00 1.02 0.00 0.12 1.34 3.67 0.66 1.64 0.17 9.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 3.19 0.00 0.00 0.00 9 E1a_E2a KnownJunction 0 0.00 0.00 1.21 1.33 0.00 0.00 0.00 3.29 1.16 22.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.66 0.00 0.00 0.00 0.00 0.00 10 ER2a ExonRegion 0 0.00 0.00 0.62 1.12 3.73 1.55 3.69 21.87 1.92 47.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.40 0.00 6.43 0.00 0.00 0.00 11 E2a_E3a KnownJunction 0 0.00 0.00 1.83 0.00 8.15 2.78 2.03 32.12 1.07 48.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.39 0.00 6.20 0.00 0.00 0.00 12 E2a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 I2_AR1 ActiveIntronRegion 0 0.00 1.39 1.23 0.30 7.70 2.73 5.68 26.35 6.87 25.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.87 0.00 9.19 0.00 0.00 0.00 14 E3_Aa NovelBoundary 0 0.00 0.00 3.67 0.00 15.70 15.84 4.42 9.61 1.79 22.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.59 0.00 9.08 0.00 0.00 0.00 15 ER3a ExonRegion 0 0.00 0.00 2.70 1.36 5.50 6.55 4.58 23.95 1.20 48.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.76 0.00 9.00 0.00 0.00 0.00 16 E3_Ab KnownBoundary 0 0.00 0.00 4.23 2.06 7.81 15.84 7.82 26.29 8.91 69.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.56 0.00 15.08 0.00 0.00 0.00 17 ER3b ExonRegion 0 0.00 0.00 4.29 0.45 6.46 3.35 3.77 23.92 2.26 48.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.09 0.00 8.86 0.00 0.00 0.00 18 E3a_E4a KnownJunction 0 0.00 0.00 7.45 0.00 0.00 4.88 4.02 33.93 6.97 57.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40.25 0.00 6.33 0.00 0.00 0.00 19 ER4a ExonRegion 0 0.00 1.66 8.14 2.31 5.95 5.13 4.42 23.42 3.89 66.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.81 0.00 9.87 0.00 0.00 0.00 20 E4a_E5a KnownJunction 0 0.00 0.00 1.57 0.00 0.00 0.00 0.00 9.16 1.71 19.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.88 0.00 0.00 0.00 21 E4a_E5b KnownJunction 0 0.00 0.00 2.69 1.40 4.33 0.00 2.08 18.28 3.47 45.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.18 0.00 5.94 0.00 0.00 0.00 22 ER5a ExonRegion 0 0.00 0.00 1.84 0.34 0.67 0.92 7.94 11.67 1.85 27.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.85 0.00 6.91 0.00 0.00 0.00 23 ER5b ExonRegion 0 0.00 5.66 2.76 0.98 6.76 5.05 6.72 20.24 4.10 48.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.45 1.48 10.37 0.00 0.00 0.00 24 E5a_E6a KnownJunction 0 0.00 0.00 4.97 1.37 0.00 5.28 0.00 21.52 2.69 43.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.56 0.00 7.86 0.00 0.00 0.00 25 E5a_E7c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 I5 Intron 0 0.44 1.28 4.20 0.00 7.27 2.30 4.43 13.47 1.92 22.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.41 0.67 2.67 0.00 0.00 0.00 27 I5_SR1 SilentIntronRegion 0 0.53 1.54 5.07 0.00 8.31 2.78 4.97 16.27 2.32 27.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.04 0.80 2.40 0.00 0.00 0.00 28 E6_Aa NovelBoundary 0 3.19 8.68 13.10 0.00 7.56 2.38 15.90 24.73 1.56 53.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.04 0.00 5.88 0.00 0.00 0.00 29 ER6a ExonRegion 0 0.00 1.62 3.96 0.45 19.34 8.81 6.86 31.42 4.39 69.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.00 1.27 9.69 0.00 0.00 0.00 30 E6_Da NovelBoundary 0 0.00 0.00 5.88 1.60 16.81 2.67 2.12 7.48 2.89 29.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.25 0.00 6.52 0.00 0.00 0.00 31 E6a_E7c KnownJunction 0 0.00 0.00 3.67 2.06 14.94 16.69 0.00 19.72 4.80 53.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.73 0.00 9.01 0.00 0.00 0.00 32 I6 Intron 0 0.59 2.26 2.28 1.41 8.18 4.84 5.89 16.11 2.30 30.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.74 0.00 8.58 0.00 0.00 0.00 33 I6_SR1 SilentIntronRegion 0 0.59 2.27 2.30 1.42 8.23 4.87 5.92 16.19 2.31 30.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.81 0.00 8.63 0.00 0.00 0.00 34 E7_Aa NovelBoundary 0 3.33 0.00 16.91 4.96 12.05 0.00 6.27 44.69 1.10 48.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.50 0.00 5.75 0.00 0.00 0.00 35 ER7a ExonRegion 0 1.74 1.02 1.92 1.34 4.96 4.02 4.85 11.35 0.54 21.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.03 0.00 7.86 0.00 0.00 0.00 36 E7_Ab KnownBoundary 0 0.00 3.35 6.53 1.56 3.90 5.34 12.72 25.18 1.65 45.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.61 0.00 3.07 0.00 0.00 0.00 37 ER7b ExonRegion 0 0.00 2.58 6.46 0.39 2.01 12.08 5.51 14.44 2.05 32.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.64 0.00 11.51 0.00 0.00 0.00 38 E7_Ac KnownBoundary 0 0.00 0.00 8.90 0.00 0.00 11.13 0.00 13.60 1.79 15.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.05 0.00 12.08 0.00 0.00 0.00 39 E7_Ad KnownBoundary 0 0.00 0.00 2.57 2.96 19.19 7.89 13.96 35.73 10.24 64.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36.40 3.95 21.16 0.00 0.00 0.00 40 ER7c ExonRegion 0 0.00 0.00 7.47 2.14 17.71 20.96 6.75 37.04 8.00 76.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39.42 1.82 24.21 0.00 0.00 0.00 41 ER7d ExonRegion 0 1.44 1.33 8.20 1.56 15.23 11.22 8.10 60.89 10.41 113.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41.64 1.66 21.99 0.00 0.00 0.00 42 E7a_E8a KnownJunction 0 0.00 0.00 4.52 1.63 7.72 14.48 12.63 58.94 8.56 133.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47.05 0.00 24.54 0.00 0.00 0.00 43 ER8a ExonRegion 0 0.00 8.53 11.83 0.00 16.54 14.98 9.05 72.52 8.95 124.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46.17 0.00 18.92 0.00 0.00 0.00 44 E8_Da KnownBoundary 0 0.00 3.35 12.48 0.00 23.43 16.13 9.45 92.21 11.83 154.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45.52 0.00 17.45 0.00 0.00 0.00 45 E8a_E10b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 ER8b ExonRegion 0 0.27 1.90 9.36 1.27 22.37 9.87 8.73 84.22 13.02 147.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67.46 2.29 13.10 0.00 0.00 0.00 47 E8_Db NovelBoundary 0 0.00 3.35 4.64 0.00 0.00 2.10 0.00 18.15 4.89 31.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.31 0.00 5.62 0.00 0.00 0.00 48 E8b_E9a KnownJunction 0 3.63 0.00 10.76 1.70 40.32 12.44 10.02 98.33 9.98 144.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 81.70 0.00 23.78 0.00 0.00 0.00 49 E9_Aa NovelBoundary 0 0.00 0.00 6.15 0.00 8.57 2.61 4.46 11.58 3.39 51.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.67 0.00 6.01 0.00 0.00 0.00 50 ER9a ExonRegion 0 0.45 1.20 9.06 0.86 17.83 11.26 6.32 53.60 8.41 120.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41.40 1.24 14.03 0.00 0.00 0.00 51 E9a_E10a KnownJunction 0 0.00 3.35 13.99 0.00 15.96 15.67 12.45 49.33 6.48 103.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72.75 0.00 9.52 0.00 0.00 0.00 52 ER10a ExonRegion 0 0.00 2.11 12.42 1.83 18.29 13.53 7.18 46.86 10.17 110.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54.14 0.00 12.28 0.00 0.00 0.00 53 E10_Da KnownBoundary 0 0.00 0.00 9.11 0.00 29.20 8.01 3.22 60.58 13.19 106.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58.66 0.00 12.34 0.00 0.00 0.00 54 ER10b ExonRegion 0 0.64 3.49 11.39 0.99 23.49 15.83 8.37 62.95 11.31 112.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41.61 2.96 13.44 0.00 0.00 0.00 55 E10_Ab KnownBoundary 0 3.11 8.49 8.25 5.76 23.26 18.68 2.12 93.36 23.18 118.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58.78 9.60 23.46 0.00 0.00 0.00 56 ER10c ExonRegion 0 0.97 3.07 10.21 2.63 60.19 25.30 14.20 76.55 10.72 119.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36.83 0.67 13.93 0.00 0.00 0.21 57 ER10d ExonRegion 0 0.00 2.03 0.00 0.00 2.68 5.50 0.00 3.46 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00