Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 P2RX4 Gene 0 67.45 14.23 52.03 41.56 37.92 41.22 27.56 36.57 35.95 31.80 65.25 17.15 80.86 78.88 152.55 46.09 68.64 39.52 36.32 25.39 46.25 40.75 52.56 2 337233 Transcript 0 35.73 11.77 33.08 26.50 20.76 17.23 18.87 22.24 23.21 19.00 56.48 11.76 83.86 80.75 110.48 28.17 57.29 22.46 24.88 11.28 46.58 37.30 43.34 3 359949 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 IG5_SR1 SilentIntergenicRegion 0 65.62 23.72 28.47 40.18 48.52 67.40 24.02 13.27 48.75 16.13 0.28 28.28 66.51 4.93 12.69 54.01 75.68 18.86 1.84 13.34 11.73 13.79 20.90 5 IG5_AR1 ActiveIntergenicRegion 0 85.62 27.18 27.85 43.24 54.49 45.01 18.17 16.18 37.05 13.66 0.00 43.69 95.08 0.00 14.24 22.97 42.01 8.06 0.00 6.38 6.21 4.92 12.55 6 IG5_AR2 ActiveIntergenicRegion 0 41.97 20.07 22.47 44.36 32.46 39.01 16.29 17.32 43.65 13.10 0.00 27.58 82.24 2.01 9.77 25.53 51.68 5.21 1.82 13.43 5.45 8.58 7.84 7 IG5_AR3 ActiveIntergenicRegion 0 8.45 8.29 11.01 19.39 11.90 13.34 4.73 4.23 16.31 4.81 0.00 3.42 10.12 0.00 1.12 9.24 6.52 8.16 0.32 3.55 0.58 1.65 2.10 8 IG5_AR4 ActiveIntergenicRegion 0 5.88 19.21 12.53 17.41 6.54 14.47 7.94 5.19 15.10 3.44 0.00 0.00 4.69 0.00 0.00 4.29 0.00 6.57 3.19 0.24 0.00 0.00 0.00 9 IG5_AR5 ActiveIntergenicRegion 0 7.20 21.56 6.62 20.85 5.35 10.09 6.88 5.01 15.93 5.51 0.00 0.00 4.69 0.00 0.00 2.97 0.00 7.39 0.00 0.00 0.00 0.00 0.00 10 ER1a ExonRegion 0 1.75 0.37 0.56 1.09 3.07 6.49 2.84 0.49 0.76 1.24 2.17 0.00 1.19 1.81 2.55 0.39 1.32 2.18 1.18 1.71 0.96 1.13 2.87 11 E1_Ab KnownBoundary 0 43.86 2.89 7.63 3.33 31.83 48.10 30.34 4.64 4.54 2.85 13.69 0.00 5.84 15.83 38.07 15.47 20.29 15.05 4.14 8.18 21.75 29.70 34.91 12 ER1b ExonRegion 0 17.04 3.55 11.30 5.17 7.64 15.66 9.23 7.86 8.76 8.32 30.85 3.47 9.11 16.35 49.78 10.26 17.16 8.20 7.51 10.10 18.40 10.84 13.62 13 E1a_E2a KnownJunction 1 34.82 3.29 20.82 18.98 0.00 13.97 6.23 17.95 20.66 18.35 88.02 0.00 0.00 23.60 74.66 11.02 58.91 18.86 9.32 15.72 50.60 2.33 21.94 14 E1a_E3a NovelJunction 0 0.00 2.57 1.60 0.00 0.00 2.84 0.00 11.91 2.75 2.90 18.58 0.00 0.00 0.00 0.00 3.76 22.07 4.35 0.00 0.00 3.15 0.00 7.77 15 I1_AR2 ActiveIntronRegion 0 16.31 3.48 6.28 10.99 15.09 9.64 11.28 7.90 6.35 3.13 2.65 8.64 26.87 3.93 15.01 12.31 11.92 9.53 7.06 8.63 2.82 1.92 8.71 16 I1_AR5 ActiveIntronRegion 0 14.08 2.19 5.24 2.02 17.11 1.89 2.45 4.84 3.13 2.33 7.23 8.13 22.81 2.63 12.75 6.26 12.25 2.80 7.53 10.70 0.80 7.10 9.21 17 E2_Aa NovelBoundary 0 32.89 9.27 13.81 22.44 7.56 2.90 32.33 21.56 5.67 6.72 2.63 0.00 32.63 2.12 18.54 12.65 13.09 8.66 3.76 3.26 6.18 2.57 7.09 18 ER2a ExonRegion 0 41.03 11.20 69.86 45.06 17.41 20.90 18.58 42.24 37.45 38.17 60.64 13.28 65.85 78.17 132.79 41.13 66.44 37.23 52.13 33.22 48.99 36.79 77.21 19 E2_Da NovelBoundary 0 21.49 15.85 21.32 25.04 12.73 2.90 7.86 16.22 8.97 5.83 7.16 6.15 6.98 0.00 13.35 6.66 15.80 2.28 3.67 12.59 2.78 6.25 11.35 20 E2a_E3a KnownJunction 1 73.05 9.60 79.15 51.77 32.85 60.19 26.63 50.77 32.64 45.29 66.75 31.06 88.96 87.23 82.82 18.71 82.94 25.33 22.68 23.71 46.46 30.62 61.72 21 I2 Intron 0 18.73 3.15 9.60 9.35 9.60 4.09 6.71 6.18 3.48 3.40 1.50 2.86 8.42 5.05 14.56 7.85 11.60 4.07 3.63 5.16 2.08 1.67 5.84 22 I2_AR1 ActiveIntronRegion 0 40.48 6.91 15.26 17.26 25.39 8.05 11.82 9.49 7.04 5.08 1.10 2.02 9.18 6.79 18.51 12.21 14.03 5.20 5.87 8.44 3.43 3.54 6.24 23 I2_SR1 SilentIntronRegion 0 14.25 2.38 8.45 7.73 6.35 3.27 5.66 5.50 2.75 3.05 1.58 3.04 8.27 4.69 13.76 6.96 11.11 3.85 3.17 4.48 1.81 1.28 5.76 24 E3_Aa NovelBoundary 0 14.82 0.00 3.10 5.63 0.00 2.56 2.16 19.06 2.92 0.00 0.00 0.00 0.00 7.06 19.16 15.72 12.25 12.15 29.55 13.55 5.93 3.12 10.59 25 ER3a ExonRegion 0 54.65 12.60 69.88 48.53 29.28 90.01 51.93 57.81 34.34 41.51 72.67 23.45 93.21 120.68 161.95 49.41 95.77 48.38 64.86 42.52 73.85 51.36 53.02 26 E3a_E4a KnownJunction 0 50.08 24.86 64.31 48.84 18.68 101.65 60.59 46.45 49.71 46.93 85.76 12.60 131.00 141.68 174.55 80.15 91.44 43.19 94.97 37.52 84.94 51.93 63.34 27 E4_Aa NovelBoundary 0 49.93 20.46 8.37 5.29 11.21 2.84 28.31 16.39 6.22 8.17 5.32 0.00 33.44 9.24 30.29 11.62 16.83 10.49 9.22 8.69 8.71 2.69 7.68 28 ER4a ExonRegion 0 30.96 13.90 30.65 18.20 23.68 36.58 24.65 22.14 29.85 26.71 52.40 13.76 75.94 96.96 139.86 46.50 71.67 25.39 46.52 20.17 60.80 35.65 51.93 29 E4_Da NovelBoundary 0 12.52 2.96 8.49 19.48 3.48 7.84 1.81 16.35 10.65 8.25 4.74 0.00 0.00 12.54 27.44 3.93 17.11 14.59 17.69 2.81 0.00 2.69 12.72 30 E4a_E5a KnownJunction 0 44.16 9.21 26.70 5.79 11.80 20.73 17.58 17.58 22.19 19.13 16.64 18.16 27.60 64.10 121.76 40.84 68.91 18.90 34.35 2.49 35.65 46.54 54.89 31 E4a_E6a NovelJunction 0 0.00 3.03 17.47 3.66 8.66 14.82 2.25 10.27 12.99 2.36 0.00 0.00 0.00 0.00 0.00 0.00 3.93 1.78 3.76 11.25 5.75 3.12 0.00 32 I4 Intron 0 12.02 5.05 9.72 11.54 7.60 7.59 5.95 10.06 7.84 5.48 6.40 3.80 20.37 11.92 18.73 10.90 11.33 12.17 13.95 10.83 2.87 7.89 9.03 33 I4_AR1 ActiveIntronRegion 0 12.08 5.08 9.77 11.59 7.63 7.63 5.98 10.10 7.88 5.50 6.43 3.81 20.45 11.97 18.81 10.95 11.38 12.23 14.01 10.88 2.88 7.93 9.08 34 E5_Aa NovelBoundary 0 13.93 3.29 6.24 8.66 12.82 5.68 9.98 20.37 6.66 13.22 14.64 11.25 35.39 18.89 26.95 12.05 9.16 16.83 9.60 13.87 2.97 2.51 15.45 35 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER5a ExonRegion 0 36.51 8.01 26.27 16.18 25.75 19.48 22.59 14.69 20.30 21.36 26.46 18.67 63.32 93.49 117.32 28.05 82.11 27.83 39.02 8.78 51.10 40.76 48.27 37 ER5b ExonRegion 0 47.14 11.40 53.04 35.32 24.58 21.42 25.50 24.63 35.33 29.31 75.67 22.24 119.39 125.08 171.89 53.87 89.57 39.46 55.76 19.86 72.48 56.10 54.67 38 E5_Db NovelBoundary 0 6.52 0.00 14.99 24.97 10.44 2.10 8.04 28.18 4.22 9.62 4.74 0.00 20.62 5.12 42.77 11.62 12.62 20.56 20.61 12.59 3.15 9.19 15.62 39 E5b_E6a KnownJunction 0 58.31 23.55 45.65 43.08 34.63 23.79 28.26 41.61 33.54 26.46 91.60 13.05 131.00 115.37 156.99 30.25 80.97 25.74 17.69 12.27 66.29 54.68 72.47 40 E6_Aa NovelBoundary 0 14.97 16.90 5.62 19.94 15.62 16.58 15.19 17.99 8.62 7.79 4.63 0.00 21.26 4.94 0.00 4.36 0.00 2.28 0.00 3.20 3.15 8.27 8.37 41 ER6a ExonRegion 0 121.66 18.68 77.36 61.21 75.32 70.68 51.36 56.55 58.57 44.04 108.12 39.13 197.33 134.12 179.38 65.02 124.99 48.36 45.22 28.32 57.38 61.84 86.03 42 E6_Da NovelBoundary 0 3.63 17.63 7.24 10.69 24.36 0.00 14.79 27.56 16.70 6.96 0.00 6.75 33.11 9.59 25.84 7.52 0.00 7.30 24.09 18.92 11.18 9.12 19.72 43 E6a_E7a KnownJunction 0 232.26 33.02 96.24 66.56 114.09 82.96 71.10 49.21 68.11 62.62 119.56 57.77 214.27 142.33 213.61 105.02 113.32 73.58 85.56 32.73 50.72 74.52 149.73 44 E7_Aa NovelBoundary 0 32.08 9.67 13.25 24.41 31.15 19.99 16.91 16.18 14.84 8.43 4.63 0.00 27.27 7.00 10.75 3.93 0.00 11.15 9.51 6.14 17.73 10.72 16.56 45 ER7a ExonRegion 0 146.53 33.10 93.63 80.61 87.90 66.09 62.11 65.44 63.98 59.98 106.35 43.11 231.69 133.44 235.61 90.55 123.02 67.81 80.24 45.98 67.59 70.28 95.28 46 E7a_E8a KnownJunction 0 67.94 29.34 90.80 64.56 19.35 35.49 32.77 49.00 51.39 42.55 75.91 50.57 169.47 63.57 196.92 53.40 68.26 41.04 17.13 18.73 40.71 42.37 56.77 47 E8_Aa NovelBoundary 0 3.26 12.63 5.20 9.52 16.04 16.98 10.73 8.46 9.75 2.58 9.79 0.00 5.84 2.47 5.93 8.20 0.00 6.72 4.80 20.90 2.78 3.12 0.00 48 ER8a ExonRegion 0 73.04 26.44 60.28 51.12 52.25 42.82 36.67 38.57 42.33 40.88 71.49 27.75 99.45 93.96 202.22 49.44 98.42 55.46 47.25 35.42 69.05 53.40 68.44 49 E8_Da NovelBoundary 0 6.74 0.00 7.27 14.25 0.00 5.68 10.42 21.85 9.92 5.18 5.11 0.00 6.82 9.89 16.94 17.17 7.48 8.62 3.67 5.56 2.41 0.00 8.62 50 E8a_E9a KnownJunction 0 113.35 40.52 78.12 56.00 102.38 92.45 63.51 53.48 48.84 42.39 96.97 17.41 170.61 109.42 168.12 39.99 87.33 48.46 54.50 33.81 71.54 74.83 68.38 51 E8a_E10a NovelJunction 0 3.70 0.00 9.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 14.46 4.10 0.00 2.40 0.00 0.00 0.00 0.00 0.00 52 I8 Intron 0 18.64 3.50 13.31 6.58 7.58 6.25 6.88 9.64 6.21 3.29 3.98 2.24 4.29 13.60 17.15 10.13 14.04 8.08 4.62 12.63 3.27 2.11 5.75 53 I8_SR1 SilentIntronRegion 0 12.26 4.90 12.14 5.12 5.32 4.88 7.16 9.75 6.64 3.19 2.70 1.74 3.08 11.23 13.94 8.88 14.16 7.71 3.57 12.66 2.02 1.24 4.39 54 I8_SR2 SilentIntronRegion 0 10.02 2.94 8.64 7.84 8.96 7.77 6.39 8.42 6.50 1.99 3.47 3.02 6.56 14.29 16.99 9.87 15.26 6.76 3.15 12.62 2.59 2.13 3.96 55 I8_AR1 ActiveIntronRegion 0 41.81 2.33 23.11 7.22 9.27 6.15 7.57 12.03 5.56 5.56 6.89 1.98 2.68 16.68 23.49 12.93 12.56 11.06 8.83 13.41 6.31 3.46 10.96 56 E9_Aa NovelBoundary 0 81.64 3.35 26.26 9.32 12.73 2.44 2.21 7.60 5.61 10.56 9.32 0.00 0.00 28.19 31.77 32.38 27.12 24.00 0.00 27.61 6.30 2.82 16.82 57 ER9a ExonRegion 0 132.53 24.99 79.73 70.44 82.29 93.52 59.16 55.18 56.38 41.12 109.81 13.54 123.84 118.44 253.49 62.51 93.72 72.34 50.83 40.76 72.70 69.27 85.19 58 E9_Da NovelBoundary 0 65.57 2.63 14.90 0.00 10.27 11.47 4.33 10.39 4.40 6.85 6.79 0.00 13.47 16.95 8.90 7.78 22.16 2.57 4.80 12.02 0.00 2.33 3.67 59 E9a_E10a KnownJunction 0 206.85 30.78 91.98 90.36 75.81 59.28 54.10 70.65 67.07 38.57 93.50 39.61 166.71 94.24 246.00 99.29 120.43 100.44 109.09 27.29 70.43 91.91 100.22 60 E10_Aa NovelBoundary 0 108.09 12.89 29.63 22.77 37.95 27.48 21.37 29.98 17.13 11.42 10.21 0.00 20.29 12.01 34.24 29.22 28.70 41.12 8.66 21.22 8.34 22.23 7.68 61 ER10a ExonRegion 0 127.28 12.69 85.76 80.00 57.53 53.85 30.03 84.41 70.57 55.59 104.70 20.20 140.20 116.89 225.15 88.76 96.93 89.70 86.00 43.94 70.69 89.50 111.64 62 E10_Da NovelBoundary 0 20.89 2.70 16.94 12.89 12.39 11.24 0.00 10.15 7.70 4.46 6.84 5.40 40.74 2.24 16.94 6.84 16.92 10.94 4.52 2.43 5.75 5.82 0.00 63 E10a_E11a KnownJunction 0 112.83 18.75 94.02 66.16 55.60 62.24 32.59 70.89 71.18 68.12 101.97 13.50 152.26 83.76 270.60 49.65 57.78 73.00 42.35 42.95 80.68 113.28 63.08 64 I10 Intron 0 20.24 4.54 10.19 9.06 11.51 8.77 5.91 9.44 4.99 5.18 5.54 0.57 7.96 7.23 11.23 6.63 10.52 12.00 3.55 4.75 3.51 2.99 6.55 65 I10_AR1 ActiveIntronRegion 0 20.37 4.57 10.25 9.12 11.59 8.82 5.95 9.50 5.02 5.21 5.58 0.57 8.01 7.28 11.30 6.67 10.59 12.07 3.58 4.78 3.53 3.01 6.59 66 E11_Aa NovelBoundary 0 18.45 5.85 24.39 16.61 4.07 8.18 15.28 12.53 3.59 0.00 2.21 0.00 0.00 0.00 17.92 0.00 4.77 9.00 3.86 3.26 0.00 0.00 3.24 67 ER11a ExonRegion 0 123.42 18.58 78.92 72.89 58.53 58.22 33.90 73.75 64.57 50.88 126.28 28.64 150.72 126.53 245.07 70.46 126.09 65.67 44.36 42.24 60.35 72.29 83.88 68 E11_Da NovelBoundary 0 31.56 12.17 26.40 22.24 28.01 12.38 8.13 27.60 2.95 6.74 19.37 0.00 6.82 2.47 9.52 12.30 8.98 17.12 22.59 2.43 0.00 16.78 0.00 69 E11a_E12a KnownJunction 0 217.89 26.38 94.91 105.25 80.90 57.81 36.43 80.22 66.06 40.70 131.14 63.92 145.77 130.91 283.83 104.50 107.15 75.94 84.99 32.41 81.36 74.95 103.29 70 I11 Intron 0 16.82 3.86 12.78 11.56 10.16 10.87 7.22 10.39 5.24 6.28 6.88 0.00 7.89 6.40 13.08 8.46 8.22 10.13 4.16 6.06 5.22 4.45 8.01 71 I11_AR1 ActiveIntronRegion 0 16.90 3.88 12.84 11.61 10.20 10.93 7.26 10.44 5.26 6.31 6.91 0.00 7.92 6.43 13.14 8.50 8.26 10.18 4.18 6.08 5.25 4.47 8.05 72 E12_Aa NovelBoundary 0 26.45 11.51 17.59 14.28 12.48 22.43 24.11 27.03 12.73 9.75 12.21 0.00 0.00 4.89 11.62 22.30 13.00 12.85 12.61 10.99 5.44 7.78 12.38 73 ER12a ExonRegion 0 74.65 15.01 56.03 44.97 39.62 44.73 24.19 36.88 37.95 33.26 67.25 15.45 54.14 75.75 180.95 52.24 63.70 40.39 25.63 23.55 44.43 37.71 44.68