Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	RFC5	Gene	0	54.54	134.38	80.33	76.82	136.89	87.59	244.01	91.64	38.84	107.56	151.60	141.08	84.06	190.93	125.96	163.10	120.28	106.39	56.35	98.89	23.90	36.11	20.89
2	484086	Transcript	0	0.00	1.68	0.00	3.88	9.08	5.42	1.97	2.51	2.82	2.18	7.50	0.43	0.00	1.77	0.00	9.52	0.00	3.15	0.00	1.25	2.90	1.13	0.00
3	229043	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	458342	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	420967	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	454402	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
7	392542	Transcript	0	34.57	36.18	27.46	24.79	75.84	60.39	132.63	44.06	30.56	55.64	57.64	59.96	73.53	44.62	35.38	67.91	39.68	42.99	27.68	38.44	10.42	11.15	10.26
8	449641	Transcript	0	4.00	3.39	6.26	5.91	11.00	12.63	18.83	7.68	3.71	8.67	31.14	19.24	22.41	23.64	9.67	17.50	35.21	9.44	4.96	11.58	6.61	1.39	0.98
9	472603	Transcript	0	4.01	15.32	16.86	9.49	9.85	7.51	14.22	13.07	9.22	10.45	8.56	4.10	2.27	10.34	9.09	26.31	10.19	45.64	11.94	16.67	4.35	1.89	8.16
10	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER1b	ExonRegion	0	0.35	0.34	0.00	0.00	1.78	4.28	0.88	0.00	0.00	0.00	0.32	0.00	0.00	0.81	0.00	0.00	0.55	0.00	0.00	0.00	0.00	0.35	0.00
12	ER1c	ExonRegion	0	4.06	6.95	1.33	0.57	5.80	20.63	27.36	1.15	0.93	2.29	9.83	0.00	0.00	22.60	1.45	5.94	11.00	2.46	1.86	7.09	1.65	2.78	2.20
13	ER1d	ExonRegion	1	21.14	54.74	22.91	15.38	62.55	105.63	221.78	20.11	9.91	45.91	113.30	25.59	25.52	135.10	79.17	193.92	140.58	61.21	40.92	82.03	28.61	11.80	25.41
14	E1_Da	NovelBoundary	0	0.00	0.00	1.27	0.00	4.07	0.00	5.83	2.42	7.44	8.35	15.27	5.40	0.00	2.47	10.51	7.69	9.35	14.84	4.05	5.94	21.00	3.12	0.00
15	E1a_E2a	KnownJunction	0	0.00	0.00	5.77	1.73	0.00	6.81	0.00	6.08	5.47	5.91	10.06	12.60	12.82	2.83	0.00	4.36	0.00	4.31	0.00	2.62	6.30	0.00	0.00
16	E1a_E2b	KnownJunction	0	0.00	0.00	1.21	1.76	0.00	0.00	0.00	0.00	0.00	4.41	0.00	6.15	6.82	4.83	0.00	0.00	0.00	1.82	0.00	0.00	0.00	0.00	0.00
17	E1a_E3b	KnownJunction	1	3.19	13.62	27.88	7.92	7.47	4.37	13.51	15.24	0.00	43.44	265.65	114.64	91.71	141.80	29.67	43.24	322.30	35.82	21.55	77.72	37.75	9.12	0.00
18	I1	Intron	0	6.60	8.26	6.73	7.86	17.18	14.20	42.64	11.68	10.78	17.11	22.45	15.90	17.87	19.65	12.15	22.46	10.29	20.15	8.72	14.87	4.79	4.72	4.99
19	I1_AR1	ActiveIntronRegion	0	3.66	6.77	7.78	8.65	14.61	16.12	40.55	12.69	12.01	20.48	25.48	15.09	17.45	23.06	12.27	26.91	9.23	24.86	10.18	16.43	5.58	4.44	6.65
20	I1_SR1	SilentIntronRegion	0	13.84	11.97	4.18	5.98	23.62	9.59	48.04	9.26	7.82	8.94	15.17	17.98	19.03	11.40	11.94	11.66	12.95	8.72	5.21	11.13	2.88	5.45	0.96
21	E2_Aa	NovelBoundary	0	3.26	14.41	4.76	9.16	22.07	10.33	60.02	26.82	17.30	14.13	10.21	24.16	25.65	12.89	0.00	36.14	8.70	17.24	4.80	26.65	14.64	9.25	0.00
22	ER2a	ExonRegion	1	11.71	12.41	18.04	17.51	28.92	33.65	60.49	41.96	28.63	57.93	45.36	38.97	42.58	46.03	34.54	69.75	17.21	40.71	29.02	37.35	21.51	14.52	13.73
23	E2_Da	KnownBoundary	0	32.30	15.06	36.01	22.11	56.71	38.16	120.17	59.48	39.15	78.22	81.39	43.66	46.43	50.15	60.94	57.34	51.43	37.72	25.98	47.11	22.80	6.25	4.10
24	E2a_E3b	KnownJunction	0	0.00	3.35	0.00	7.76	16.55	10.85	3.93	5.01	5.64	4.35	15.00	0.00	0.00	2.88	0.00	17.26	0.00	6.30	0.00	2.49	5.81	2.27	0.00
25	ER2b	ExonRegion	0	34.57	36.18	27.46	24.79	75.84	60.39	132.63	44.06	30.56	55.64	57.64	59.96	73.53	44.62	35.38	67.91	39.68	42.99	27.68	38.44	10.42	11.15	10.26
26	E2_Ab	KnownBoundary	1	28.52	33.09	28.41	22.31	43.72	41.06	103.43	45.18	30.21	41.53	37.96	93.78	27.11	44.15	43.88	47.77	33.47	30.80	32.10	34.77	8.71	6.18	4.18
27	ER2c	ExonRegion	1	19.60	20.83	24.63	19.41	61.36	47.58	115.71	39.99	22.06	36.60	28.83	62.48	55.96	47.21	16.66	31.00	16.68	24.72	24.27	38.33	8.81	2.73	1.82
28	E2_Db	NovelBoundary	1	29.34	27.89	149.99	92.60	122.50	50.88	151.52	117.06	96.58	112.34	28.53	63.77	92.20	18.48	19.90	30.76	3.93	26.49	12.33	43.85	7.85	7.41	29.11
29	E2b_E3b	KnownJunction	0	24.30	20.46	28.38	20.04	55.43	54.34	105.68	30.60	18.72	32.40	29.59	54.77	40.74	47.21	13.60	30.50	9.54	18.61	27.58	18.15	5.68	2.76	4.18
30	E3_Aa	NovelBoundary	0	57.05	46.90	28.38	27.94	132.00	55.71	199.79	25.10	15.97	31.72	48.70	24.61	6.66	14.83	31.40	30.42	21.22	23.92	21.93	35.15	8.03	0.00	3.84
31	ER3a	ExonRegion	0	4.00	3.39	6.26	5.91	11.00	12.63	18.83	7.68	3.71	8.67	31.14	19.24	22.41	23.64	9.67	17.50	35.21	9.44	4.96	11.58	6.61	1.39	0.98
32	ER3b	ExonRegion	0	20.40	43.18	85.07	65.95	109.16	105.76	175.94	76.57	39.16	122.54	263.84	133.40	109.92	344.01	151.86	269.02	251.80	135.26	81.72	145.58	43.04	28.88	29.27
33	E3a_E4a	KnownJunction	1	11.26	59.13	106.50	101.05	165.96	182.11	262.72	99.07	52.49	177.05	178.73	133.39	122.07	470.60	377.90	575.49	154.00	186.13	136.38	223.20	23.41	37.11	110.20
34	I3	Intron	0	3.57	6.37	3.96	6.12	10.97	4.20	25.38	7.45	4.22	5.36	10.95	11.12	18.06	8.70	4.47	6.45	4.38	7.76	6.14	6.93	1.59	1.51	1.06
35	I3_SR1	SilentIntronRegion	0	3.59	6.41	3.98	6.15	11.02	4.22	25.49	7.49	4.24	5.38	11.01	11.17	18.15	8.73	4.49	6.48	4.40	7.79	6.17	6.96	1.60	1.51	1.07
36	E4_Aa	NovelBoundary	1	7.04	9.41	11.62	12.15	12.99	0.00	42.44	14.70	11.75	9.78	9.48	0.00	42.04	10.36	17.80	13.07	3.55	15.71	14.31	17.64	5.56	0.00	4.01
37	ER4a	ExonRegion	0	21.40	86.23	112.43	107.24	145.97	130.04	326.55	93.66	43.18	123.95	215.41	135.92	109.55	274.62	168.38	241.41	164.92	173.88	63.68	153.49	42.43	31.25	31.38
38	E4a_E5a	KnownJunction	0	68.23	179.31	140.09	118.83	311.46	260.25	938.55	97.80	59.32	161.14	338.61	171.06	91.55	315.26	160.46	305.39	243.10	182.93	103.72	176.86	63.38	36.07	19.04
39	ER5a	ExonRegion	0	49.95	164.85	104.34	110.79	155.93	119.15	341.40	102.61	56.65	150.47	287.54	152.13	129.56	310.86	179.01	265.97	235.64	207.36	83.78	171.99	46.97	41.36	30.03
40	E5a_E6a	KnownJunction	0	96.54	230.68	140.59	134.68	131.58	125.38	278.89	140.56	49.04	154.67	371.15	163.40	128.56	361.00	238.09	353.75	306.78	258.96	114.26	200.64	41.02	71.15	39.61
41	ER5b	ExonRegion	0	0.00	0.00	0.00	0.00	1.61	0.00	0.00	0.00	0.00	0.00	0.00	0.87	0.00	0.65	0.00	1.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	ER6a	ExonRegion	0	80.65	209.25	142.48	132.76	118.56	119.45	296.07	129.28	52.90	144.11	398.18	210.35	143.61	402.28	225.10	313.82	340.79	265.82	72.27	183.57	51.60	67.32	39.90
43	ER6b	ExonRegion	0	82.21	167.39	169.62	139.65	179.28	120.09	304.66	133.21	56.93	142.14	356.30	193.77	171.66	415.02	194.06	272.38	291.21	270.72	81.26	170.50	53.04	52.37	37.59
44	E6b_E7a	KnownJunction	0	80.38	158.00	189.44	159.59	237.52	144.52	365.76	127.00	62.47	149.16	360.25	174.66	162.65	442.35	200.01	359.14	321.55	259.04	106.92	190.98	53.44	52.11	26.80
45	ER7a	ExonRegion	0	46.88	106.76	146.04	138.75	202.99	140.12	342.22	135.47	60.43	154.55	333.34	240.02	182.20	372.78	171.57	307.07	304.88	265.88	107.77	163.15	50.85	52.66	30.52
46	E7_Ab	KnownBoundary	0	50.75	88.73	138.08	153.76	176.57	185.46	331.49	150.41	64.29	178.36	291.81	250.13	222.87	337.81	184.93	369.05	290.42	297.05	88.00	181.14	36.76	60.62	36.71
47	ER7b	ExonRegion	0	34.22	94.93	130.87	136.80	135.72	97.44	300.88	134.76	49.56	146.43	244.88	274.51	160.96	374.90	218.09	374.08	245.14	241.15	88.89	154.91	50.69	60.84	37.58
48	E7_Da	NovelBoundary	0	0.00	9.08	5.06	8.72	0.00	10.90	12.28	6.04	3.96	5.13	0.00	0.00	0.00	0.00	0.00	3.33	0.00	2.11	4.33	0.00	9.27	0.00	7.00
49	E7a_E8a	KnownJunction	0	50.23	125.31	139.17	108.18	218.25	154.57	398.79	88.72	52.95	137.18	280.54	303.55	113.47	455.71	189.13	322.99	261.62	259.62	87.25	136.02	58.50	56.46	37.65
50	E8_Aa	NovelBoundary	0	17.19	12.04	9.28	10.22	11.97	15.22	6.40	12.65	21.53	2.69	0.00	0.00	0.00	0.00	4.45	0.00	4.77	11.23	4.24	0.00	5.50	5.02	7.94
51	ER8a	ExonRegion	0	46.87	139.08	104.46	80.38	209.88	126.06	331.59	95.78	49.28	137.67	316.08	235.69	131.55	368.50	157.62	295.73	241.73	237.48	102.44	126.31	52.59	37.76	26.50
52	E8a_E9a	KnownJunction	0	44.53	154.58	98.75	92.30	195.08	131.12	386.16	122.69	40.39	138.02	213.16	270.54	163.95	297.43	145.87	256.77	148.29	239.52	95.16	108.66	30.52	40.11	31.07
53	ER9a	ExonRegion	0	78.23	180.00	110.65	106.13	156.98	119.28	299.07	118.17	57.16	146.67	280.94	279.22	126.20	313.64	205.70	298.68	218.93	225.97	85.69	131.39	48.97	41.73	32.94
54	E9_Da	KnownBoundary	0	0.00	25.59	15.11	9.42	0.00	7.72	13.91	10.97	10.39	13.32	2.68	0.00	5.84	11.54	4.45	15.81	17.20	24.04	8.66	14.38	3.15	7.47	4.27
55	E9a_E10a	KnownJunction	1	77.50	135.83	104.52	101.52	153.91	106.98	313.91	114.43	53.70	142.99	200.52	258.08	68.18	255.64	129.18	215.93	206.26	150.31	86.78	106.04	18.66	28.72	24.33
56	ER9b	ExonRegion	0	4.01	15.32	16.86	9.49	9.85	7.51	14.22	13.07	9.22	10.45	8.56	4.10	2.27	10.34	9.09	26.31	10.19	45.64	11.94	16.67	4.35	1.89	8.16
57	E9_Db	NovelBoundary	0	9.26	8.62	20.76	6.93	16.81	5.05	31.13	15.69	12.36	25.84	4.69	11.85	0.00	21.66	10.01	37.00	3.55	44.94	29.93	32.09	5.93	2.69	16.13
58	I9	Intron	0	9.58	16.73	12.39	7.94	24.76	11.31	27.23	13.77	7.19	14.41	6.36	11.89	8.11	12.73	6.91	24.45	15.61	14.16	16.38	17.06	1.81	6.86	10.27
59	I9_AR1	ActiveIntronRegion	0	9.61	16.79	12.44	7.97	24.86	11.36	27.34	13.83	7.22	14.47	6.39	11.94	8.15	12.78	6.94	24.55	15.68	14.22	16.44	17.13	1.82	6.87	10.31
60	E10_Aa	NovelBoundary	0	7.48	18.02	17.77	19.88	35.14	15.45	32.99	26.25	7.44	16.84	2.21	44.11	6.82	22.66	22.99	43.41	12.44	20.93	13.84	24.48	0.00	2.94	11.27
61	ER10a	ExonRegion	0	103.79	158.18	105.05	90.89	164.35	101.26	276.83	92.63	40.87	136.44	270.21	233.18	95.48	322.49	213.43	269.59	193.02	122.88	91.07	136.20	29.89	46.67	33.43
62	E10_Da	NovelBoundary	0	11.04	32.49	33.56	20.78	37.01	23.85	55.38	29.90	26.94	52.03	20.01	32.41	6.33	17.42	18.17	51.87	9.16	38.55	34.92	46.66	11.37	6.25	11.87
63	E10a_E11a	KnownJunction	0	124.76	141.69	103.99	72.48	222.24	108.01	329.98	83.83	31.92	124.83	225.43	233.93	100.81	269.71	206.94	248.05	199.63	134.18	76.52	126.43	32.56	17.15	26.04
64	E10a_E12a	NovelJunction	0	0.00	5.85	0.00	1.96	4.33	5.74	0.00	2.55	1.59	1.37	0.00	0.00	0.00	0.00	0.00	4.36	0.00	12.27	12.99	3.26	0.00	0.00	0.00
65	I10	Intron	0	9.96	27.19	19.08	21.62	29.01	18.07	56.05	26.28	13.94	24.54	16.08	15.89	14.68	22.45	14.48	28.41	9.81	29.72	14.04	28.34	5.24	8.46	7.71
66	I10_AR1	ActiveIntronRegion	0	7.03	23.32	23.14	30.03	24.22	16.05	47.15	18.66	16.11	23.20	13.42	25.29	8.41	22.99	23.28	36.77	12.95	34.93	13.46	25.04	7.98	10.06	14.18
67	I10_AR2	ActiveIntronRegion	0	7.92	21.02	13.25	15.33	27.46	15.34	52.39	20.15	11.85	20.37	16.25	15.38	18.12	20.79	10.64	23.40	7.72	23.98	14.07	21.17	3.55	8.13	4.85
68	I10_SR2	SilentIntronRegion	0	13.14	30.37	21.65	22.78	29.39	17.71	57.55	33.74	15.12	28.37	17.33	11.47	13.48	25.34	13.47	32.53	7.39	35.45	15.64	36.27	6.32	9.31	8.27
69	I10_AR3	ActiveIntronRegion	0	9.78	40.76	22.24	24.68	39.64	30.42	75.43	30.98	13.40	26.50	15.51	18.81	17.74	17.41	16.72	18.21	19.64	20.81	9.72	28.48	2.78	4.52	5.18
70	E11_Aa	NovelBoundary	0	40.23	68.41	36.28	33.73	34.97	16.13	81.26	34.87	25.49	27.13	28.95	25.06	45.94	31.67	17.80	19.05	17.30	19.23	8.19	42.44	11.31	12.43	3.67
71	ER11a	ExonRegion	0	108.64	161.43	111.51	82.37	311.17	158.57	507.61	106.22	35.23	150.66	247.52	258.43	140.36	329.31	197.55	273.33	216.66	173.08	87.80	133.31	23.68	33.68	48.53
72	E11_Da	NovelBoundary	1	39.93	78.41	46.80	28.20	48.30	0.00	100.65	36.31	19.59	36.51	20.06	6.00	46.59	21.25	18.30	33.24	16.92	33.12	24.94	40.84	2.90	7.84	11.69
73	E11a_E12a	KnownJunction	0	121.65	186.41	131.07	107.38	437.61	200.68	589.88	130.45	37.30	162.60	265.38	249.98	88.31	283.30	238.95	329.14	218.70	182.73	136.76	141.51	19.21	64.85	45.75
74	I11	Intron	0	17.91	41.01	24.00	25.43	38.37	24.01	63.91	32.75	22.70	31.45	19.86	24.24	28.23	22.87	19.47	32.96	16.88	56.98	25.29	41.60	7.48	9.66	12.49
75	I11_AR1	ActiveIntronRegion	0	19.36	46.12	24.25	27.61	41.41	24.59	68.68	34.69	24.44	35.01	21.92	27.78	32.55	24.20	20.23	33.89	18.40	64.21	26.36	45.86	7.73	9.53	12.33
76	I11_AR2	ActiveIntronRegion	0	14.39	27.08	25.82	20.73	31.68	23.24	50.43	29.42	18.88	21.83	14.13	14.15	14.90	20.11	18.47	33.66	13.94	38.87	23.99	30.78	7.33	10.82	14.72
77	E12_Aa	NovelBoundary	0	21.78	38.74	39.12	28.07	51.70	24.87	59.84	35.82	25.46	41.80	17.58	12.15	28.57	21.72	10.63	36.06	30.95	59.32	49.22	38.09	8.34	4.96	7.94
78	ER12a	ExonRegion	0	108.42	231.43	117.20	117.99	233.45	122.53	390.33	144.89	54.14	164.65	180.50	192.81	104.87	254.23	190.52	180.72	123.69	110.09	69.43	126.95	20.88	62.80	23.69
79	E12_Da	KnownBoundary	1	136.62	400.19	74.81	103.32	267.74	99.09	313.91	124.41	37.62	132.00	73.65	294.85	153.40	159.63	204.96	71.01	52.08	27.40	55.63	82.58	11.49	48.56	11.87
80	ER12b	ExonRegion	1	61.40	239.69	88.59	94.63	156.16	74.04	239.13	127.53	45.74	124.93	97.94	173.70	79.82	130.38	121.77	95.76	69.57	39.81	54.00	97.92	11.75	48.22	12.29
81	ER12c	ExonRegion	0	4.94	11.86	2.45	7.04	16.50	4.28	18.31	5.19	2.47	12.42	3.22	10.82	11.73	3.52	14.99	11.39	3.85	6.16	5.84	6.74	3.31	2.08	0.00
82	IG4	Intergenic	0	21.30	61.86	35.13	26.80	71.22	35.69	99.21	44.38	23.47	37.85	39.78	66.59	38.63	47.23	55.93	53.19	35.44	65.15	27.79	49.02	15.28	15.37	14.45
83	IG4_AR1	ActiveIntergenicRegion	0	21.40	62.14	35.28	26.92	71.51	35.84	99.64	44.57	23.57	38.01	39.94	66.89	38.80	47.44	56.16	53.41	35.60	65.44	27.90	49.21	15.35	15.43	14.52