Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 VPS29 Gene 0 646.01 712.58 378.18 409.00 599.38 508.61 621.65 411.91 252.20 290.98 506.06 538.70 430.58 385.23 559.28 303.41 377.64 117.04 150.78 226.46 162.47 270.81 139.82 2 397678 Transcript 1 430.78 754.38 140.43 155.83 289.47 928.38 498.55 173.34 128.87 145.31 149.34 4.82 45.59 143.08 167.26 146.14 146.71 115.96 89.92 171.40 163.06 142.13 155.91 3 447578 Transcript 0 130.77 107.20 28.71 28.43 77.60 129.41 201.90 28.77 20.03 21.79 55.50 78.86 72.70 79.93 56.37 46.28 56.12 23.62 16.15 35.41 21.56 25.45 31.46 4 360579 Transcript 1 7.94 1.36 3.78 1.36 20.51 16.96 35.75 0.86 2.47 3.25 29.15 2.16 8.60 13.13 20.07 14.61 26.96 1.69 9.03 4.08 4.77 1.22 2.20 5 ER1a ExonRegion 1 375.27 444.03 47.63 48.89 183.00 256.41 293.00 48.02 38.13 38.55 202.87 0.00 42.01 202.87 309.05 173.80 186.86 30.69 80.19 100.00 126.38 106.62 121.81 6 E1_Da NovelBoundary 1 1280.97 1351.27 190.15 188.29 442.78 911.58 1030.63 178.67 132.61 154.86 441.06 34.51 147.56 368.48 379.51 505.68 542.68 191.47 205.65 290.44 291.77 307.82 361.68 7 ER1b ExonRegion 1 861.70 1428.43 164.16 179.59 470.76 1226.63 816.76 206.47 152.64 179.73 383.28 12.57 149.32 576.41 784.74 349.66 382.58 129.94 187.94 313.45 336.10 279.06 311.28 8 E1_Db NovelBoundary 0 13.48 6.45 8.84 13.72 3.74 19.59 14.18 0.00 6.63 9.99 31.53 0.00 0.00 16.42 10.01 34.61 19.92 49.25 13.08 2.43 12.36 6.18 7.77 9 E1b_E3b KnownJunction 1 529.95 1153.15 304.84 345.31 458.74 1851.09 788.13 371.68 276.59 317.37 86.29 6.30 34.58 80.52 54.39 113.56 76.48 263.15 95.81 262.19 204.85 175.07 179.77 10 E1b_E4a NovelJunction 0 6.15 13.29 5.50 3.76 8.66 5.79 0.00 0.00 8.28 1.16 0.00 0.00 0.00 2.47 4.45 0.00 4.39 2.11 0.00 0.00 9.08 2.45 0.00 11 ER1c ExonRegion 1 817.92 1420.34 209.27 225.03 516.12 1602.33 910.44 268.49 200.77 224.16 308.19 12.99 105.79 287.29 305.60 297.21 323.49 169.99 183.69 323.40 321.01 286.83 322.05 12 Ix Intron 0 1.02 4.24 14.06 20.85 13.30 23.82 15.93 14.45 10.33 13.71 15.19 2.29 5.40 27.69 22.96 46.71 23.82 46.84 15.33 15.01 10.96 5.68 15.07 13 Ix_AR1 ActiveIntronRegion 0 1.02 4.27 14.15 20.98 13.39 23.97 16.03 14.54 10.40 13.78 15.26 2.30 5.43 27.86 23.11 47.01 23.97 47.13 15.42 15.11 11.03 5.71 15.17 14 I1_SR1 SilentIntronRegion 0 39.70 63.39 45.49 69.27 70.67 46.16 106.59 43.82 33.27 42.22 29.46 76.58 87.23 50.56 29.45 49.47 33.01 19.60 11.96 53.49 9.07 23.28 13.61 15 I1_AR2 ActiveIntronRegion 0 31.95 105.54 50.53 80.09 72.56 33.12 135.02 40.64 42.76 40.51 25.17 86.72 104.66 34.97 23.76 30.72 31.44 15.58 11.53 48.63 6.08 19.82 9.90 16 I1_SR2 SilentIntronRegion 0 14.22 88.99 39.60 90.93 107.35 19.00 102.16 73.56 46.39 42.39 9.12 107.54 77.10 34.95 13.93 39.95 11.75 12.49 12.87 41.11 0.26 29.00 16.21 17 ER2a ExonRegion 0 7.94 1.36 3.78 1.36 20.51 16.96 35.75 0.86 2.47 3.25 29.15 2.16 8.60 13.13 20.07 14.61 26.96 1.69 9.03 4.08 4.77 1.22 2.20 18 I2 Intron 0 63.53 59.44 53.11 111.88 122.33 45.14 178.17 56.27 44.69 44.28 62.59 214.42 182.84 95.67 66.16 59.31 52.85 11.42 17.97 42.06 9.21 39.99 16.43 19 I2_AR1 ActiveIntronRegion 0 39.55 63.13 44.79 116.50 83.33 38.73 147.74 47.03 41.26 45.90 83.58 141.90 112.94 102.63 47.19 76.84 70.03 16.16 23.03 49.42 17.01 39.94 18.04 20 I2_AR2 ActiveIntronRegion 0 47.60 56.04 55.76 109.10 128.11 45.29 183.85 60.19 43.53 41.56 63.83 220.05 193.76 108.26 62.31 52.43 63.24 11.76 15.25 43.65 8.99 34.96 17.21 21 I2_SR2 SilentIntronRegion 1 22.29 19.16 13.16 7.88 22.25 14.23 35.23 11.42 5.10 0.95 34.29 61.55 48.48 77.64 18.07 42.84 29.28 7.63 15.89 10.62 9.77 8.08 6.51 22 I2_AR5 ActiveIntronRegion 1 104.76 67.42 64.54 128.84 165.35 55.91 222.55 67.98 55.36 52.93 51.66 294.26 252.10 85.49 93.41 56.89 35.42 8.46 17.63 40.73 3.76 50.42 16.46 23 I2 Intron 0 294.24 78.36 32.42 63.68 132.42 68.60 231.58 50.60 33.38 27.76 86.89 294.05 208.34 112.21 106.83 80.84 74.82 20.49 27.68 49.03 12.49 46.44 22.19 24 I2_AR1 ActiveIntronRegion 0 298.54 79.51 32.85 64.60 134.37 69.63 235.00 51.32 33.82 28.15 88.11 298.41 211.33 113.87 108.28 81.99 75.92 20.80 28.07 49.75 12.68 47.11 22.52 25 E3_Aa NovelBoundary 1 323.17 108.27 83.65 128.29 104.50 40.37 209.07 78.29 56.16 39.16 51.28 257.33 175.96 62.92 115.09 70.84 42.36 22.63 32.38 49.54 27.31 28.47 12.04 26 E3_Ab NovelBoundary 0 447.56 169.31 87.49 90.93 300.25 158.20 559.72 79.44 42.39 37.58 167.52 165.20 137.00 146.15 126.46 202.00 112.95 41.16 55.25 44.42 26.50 83.58 56.60 27 ER3a ExonRegion 0 130.77 107.20 28.71 28.43 77.60 129.41 201.90 28.77 20.03 21.79 55.50 78.86 72.70 79.93 56.37 46.28 56.12 23.62 16.15 35.41 21.56 25.45 31.46 28 ER3b ExonRegion 0 721.89 276.00 396.85 421.41 498.95 421.92 612.26 436.29 297.75 317.76 861.74 514.07 525.21 683.73 835.07 627.09 652.70 295.59 289.18 301.37 330.49 319.97 318.31 29 E3a_E4a KnownJunction 0 1835.73 415.39 517.43 491.51 541.43 257.52 565.37 510.02 330.90 354.85 947.19 375.57 522.37 592.97 824.16 633.51 754.56 343.73 240.29 346.24 372.09 299.92 365.61 30 E3a_E5a NovelJunction 0 9.41 12.30 5.97 20.74 12.56 8.12 24.86 17.50 9.92 2.69 38.59 18.31 13.64 28.55 63.54 11.45 18.23 19.15 8.85 2.75 0.00 0.00 15.71 31 I3_SR3 SilentIntronRegion 0 209.88 113.31 18.92 53.29 73.37 51.80 108.05 23.58 23.43 19.04 13.09 30.58 38.91 18.37 12.78 17.76 7.89 19.78 11.40 27.03 5.27 9.13 3.51 32 E4_Aa NovelBoundary 0 63.72 74.07 54.55 143.74 292.36 91.31 149.84 67.81 35.68 29.06 33.59 31.51 51.46 28.61 26.82 32.38 9.16 28.23 4.33 34.32 8.83 14.27 0.00 33 ER4a ExonRegion 0 1037.88 1015.95 580.43 541.68 1166.33 1094.25 1133.89 571.35 365.90 393.53 993.94 761.11 650.40 697.94 935.83 502.04 678.56 184.78 220.90 321.89 327.47 360.66 191.12 34 E4_Da NovelBoundary 0 1569.98 511.42 133.44 234.60 497.28 155.93 481.77 88.72 53.41 79.62 45.12 120.94 125.97 63.04 54.64 76.99 51.43 44.11 30.97 92.42 27.86 19.96 23.73 35 E4a_E5a KnownJunction 0 988.10 802.88 628.48 529.20 550.51 256.61 497.85 623.63 408.99 409.75 869.33 1064.60 532.27 595.74 1419.62 733.40 528.38 154.25 232.38 248.13 148.14 466.17 241.32 36 I4_AR2 ActiveIntronRegion 0 34.67 82.96 26.51 51.48 110.00 61.78 139.14 21.50 9.09 19.01 15.52 18.34 19.53 12.55 16.56 13.78 12.24 15.92 3.94 24.33 2.04 5.15 6.35 37 ER5a ExonRegion 0 1121.18 1072.11 640.28 654.73 939.05 601.31 863.11 619.55 396.45 452.86 620.18 992.47 665.57 417.21 795.45 344.94 531.22 96.90 195.95 300.74 112.16 410.18 143.40 38 E5_Da KnownBoundary 1 363.69 798.02 371.22 477.43 323.43 187.22 461.63 486.03 277.57 365.83 117.35 491.11 216.71 110.48 283.70 50.76 85.65 15.13 42.26 238.67 8.28 264.65 25.87 39 ER5b ExonRegion 1 185.34 557.19 188.04 275.81 223.83 125.91 240.75 273.37 131.74 183.41 59.11 317.94 221.01 65.76 131.90 35.96 31.39 12.15 32.10 111.50 5.58 153.40 15.43 40 ER5c ExonRegion 0 0.00 0.00 0.00 4.09 0.00 3.67 2.65 5.19 0.00 1.15 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 IG38 Intergenic 0 12.68 24.55 14.82 51.59 106.74 69.43 61.00 18.66 18.13 16.18 3.36 13.21 11.46 10.28 8.75 8.62 11.16 15.27 9.85 23.43 0.43 8.25 7.09 42 IG38_AR4 ActiveIntergenicRegion 0 22.61 43.45 8.18 28.69 34.10 33.49 52.45 13.31 5.71 13.54 4.00 8.86 11.50 5.99 5.88 5.14 4.55 8.55 7.68 23.45 0.76 11.49 7.08 43 IG38_SR3 SilentIntergenicRegion 0 5.81 10.41 16.02 64.20 108.09 69.72 39.45 21.19 23.89 19.06 3.53 14.66 14.88 11.56 10.67 10.87 16.29 20.46 13.97 22.55 0.40 6.47 8.05 44 IG38_AR1 ActiveIntergenicRegion 0 17.45 36.67 21.59 51.28 213.63 123.70 135.70 19.90 20.83 12.33 1.99 15.87 1.99 13.29 7.82 7.66 6.80 10.90 1.64 26.28 0.00 8.57 4.54