Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ARPC3 Gene 0 593.37 297.17 370.72 263.48 451.98 335.17 356.63 309.83 188.74 356.52 784.16 616.49 347.87 619.26 782.01 519.33 615.43 157.17 223.59 218.05 262.89 342.89 175.07 2 392683 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 228825 Transcript 0 83.42 66.00 8.24 11.04 36.65 64.82 51.76 10.52 7.90 12.98 52.95 14.60 7.70 28.03 53.67 38.55 79.79 9.86 26.78 11.16 41.02 21.47 19.63 4 475777 Transcript 1 47.42 30.65 21.71 40.24 48.72 22.24 50.82 30.29 24.85 35.68 27.96 50.13 70.88 26.94 31.67 28.13 32.40 9.92 11.25 35.34 8.35 48.90 18.83 5 426440 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 471641 Transcript 0 9.30 2.32 8.05 8.19 17.70 7.72 12.73 6.66 3.21 5.10 15.70 13.78 8.84 10.63 7.62 7.69 14.72 0.94 3.26 3.20 1.59 6.51 2.83 7 476566 Transcript 0 55.84 11.24 17.17 22.08 22.92 21.73 26.08 32.24 13.97 30.48 44.12 27.49 40.96 27.11 32.45 29.72 42.28 7.54 13.48 19.72 12.27 27.64 15.00 8 462642 Transcript 0 21.53 4.20 5.39 10.80 15.89 7.97 16.00 9.38 5.25 8.59 9.97 9.63 3.20 11.65 8.37 9.65 5.05 3.50 2.78 9.03 5.54 10.51 6.75 9 488941 Transcript 0 3.70 0.00 0.00 0.00 0.00 0.00 3.97 0.00 0.00 0.00 2.32 5.55 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 467622 Transcript 1 185.97 16.91 18.14 62.81 85.08 66.17 68.92 55.36 21.04 28.63 34.14 59.82 59.07 32.71 39.42 37.33 21.25 4.79 9.38 24.84 5.31 33.28 16.10 11 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER2a ExonRegion 0 121.33 91.66 11.28 12.78 48.32 119.55 85.53 11.97 9.63 14.97 91.41 6.47 3.28 40.23 89.20 65.71 132.35 19.41 52.50 14.51 79.84 34.27 34.60 13 E2_Ab KnownBoundary 0 161.58 155.63 6.15 2.06 80.65 244.01 178.24 7.31 7.90 6.10 112.50 12.30 19.97 66.98 153.53 103.05 146.05 7.21 124.99 19.24 98.35 30.13 33.38 14 E2_Ac KnownBoundary 1 2443.99 1070.34 57.45 74.95 726.91 1250.08 1087.55 41.44 32.55 60.73 1641.94 51.47 57.46 568.61 1910.14 1111.67 2156.15 132.82 431.73 222.37 1176.61 464.76 572.10 15 ER2b ExonRegion 1 2253.03 1008.36 207.44 186.91 788.20 1458.00 1215.11 214.82 163.83 267.80 1803.53 25.05 22.11 683.64 1648.74 1308.80 2482.04 276.90 479.62 270.97 1346.31 588.45 595.09 16 E2_Ad NovelBoundary 1 6467.74 1693.12 547.50 379.24 2634.30 3187.20 2846.90 586.04 395.25 716.60 2984.28 376.62 271.57 2177.83 2734.29 2715.53 3429.92 601.12 866.85 711.65 1656.81 1090.75 1001.91 17 ER2c ExonRegion 1 4196.73 1480.84 352.06 274.25 1674.81 2464.20 2062.48 394.29 271.35 480.55 2905.89 31.80 37.34 1561.22 2540.16 2261.56 3559.00 479.85 727.37 516.61 1859.59 953.37 936.00 18 E2a_E3a KnownJunction 1 4607.41 1639.51 746.28 473.80 1970.54 1875.23 1875.46 754.28 480.75 981.35 1926.33 95.28 102.10 1210.32 1873.67 1647.77 1908.65 656.62 636.07 861.03 570.64 422.94 475.30 19 ER2d ExonRegion 1 4706.85 1559.28 585.60 417.36 2113.04 2480.82 2156.03 622.19 411.91 805.05 2787.05 45.60 80.36 1669.65 2111.73 2339.36 2891.47 665.13 776.80 758.37 1268.90 801.25 805.52 20 ER3a ExonRegion 1 1232.93 461.24 478.51 304.18 548.74 450.42 489.34 439.75 320.98 653.40 2140.12 724.10 543.29 549.00 751.25 596.36 2265.01 286.23 308.98 353.17 1180.92 265.40 203.48 21 E3_Da KnownBoundary 0 34.75 9.01 14.22 34.13 19.27 5.45 12.37 22.76 10.33 19.42 29.48 24.91 47.72 12.83 20.03 4.36 35.62 11.44 0.00 34.26 27.55 21.06 11.87 22 E3a_E4a KnownJunction 0 0.00 0.00 5.53 1.27 0.00 0.00 0.00 0.00 0.00 1.67 15.21 12.00 0.00 5.18 0.00 0.00 14.87 0.00 0.00 0.00 0.00 0.00 0.00 23 E3a_E5b KnownJunction 1 656.49 303.24 724.31 498.37 326.15 259.96 256.63 708.45 448.95 936.92 3146.48 538.98 286.34 1198.13 1536.93 708.70 2772.13 280.35 547.50 608.11 1023.96 685.51 306.03 24 ER3b ExonRegion 1 47.42 30.65 21.71 40.24 48.72 22.24 50.82 30.29 24.85 35.68 27.96 50.13 70.88 26.94 31.67 28.13 32.40 9.92 11.25 35.34 8.35 48.90 18.83 25 ER4a ExonRegion 0 18.60 4.65 10.58 15.12 35.40 15.44 25.47 13.31 6.42 8.54 16.18 15.56 17.68 16.09 15.23 15.37 14.58 1.88 6.51 6.40 3.19 13.01 5.65 26 E5_Aa NovelBoundary 0 331.39 17.76 15.49 18.68 66.98 21.01 71.37 36.72 11.37 40.56 30.06 63.92 61.68 37.14 49.08 21.70 26.37 14.26 21.65 11.89 14.52 36.80 19.72 27 ER5a ExonRegion 0 55.84 11.24 17.17 22.08 22.92 21.73 26.08 32.24 13.97 30.48 44.12 27.49 40.96 27.11 32.45 29.72 42.28 7.54 13.48 19.72 12.27 27.64 15.00 28 E5_Ab KnownBoundary 0 115.35 25.98 19.25 29.27 33.70 49.52 31.00 38.90 22.34 37.39 23.27 31.81 67.69 33.61 27.94 19.31 12.81 4.19 7.91 29.98 13.96 37.17 12.21 29 ER5b ExonRegion 0 913.36 470.05 993.73 786.94 860.99 489.19 651.96 1008.46 580.89 1194.40 2665.19 1263.06 1134.62 2027.71 3029.90 2333.90 1943.27 553.50 881.30 904.06 521.32 1371.67 861.09 30 E5a_E6c KnownJunction 1 1046.93 505.11 1212.14 947.53 707.13 549.91 833.62 1064.76 586.74 1126.16 1538.92 1383.45 979.48 2006.31 3184.63 2559.67 996.17 642.57 909.11 770.91 213.81 942.51 859.09 31 ER6a ExonRegion 0 15.73 8.13 7.43 14.55 18.51 7.65 17.95 15.97 7.54 11.10 16.42 12.48 6.39 13.97 8.03 12.97 8.52 5.63 3.49 14.63 11.08 14.31 11.97 32 E6_Ab KnownBoundary 0 15.56 5.39 4.97 9.96 3.74 7.55 24.33 15.85 4.66 12.57 14.21 12.00 7.30 4.65 0.00 4.10 0.00 6.80 0.00 9.01 11.68 10.96 4.27 33 E6_Ac KnownBoundary 0 25.19 6.18 3.08 17.38 15.11 9.03 14.71 14.87 8.22 5.18 5.26 0.00 0.00 2.30 4.70 7.52 4.58 0.00 0.00 6.01 2.35 2.76 7.17 34 ER6b ExonRegion 1 418.01 249.11 556.32 462.70 382.63 276.90 391.89 544.46 314.95 561.98 899.76 703.54 558.11 983.40 1402.76 1297.33 534.75 339.06 409.32 414.89 131.12 506.30 425.81 35 ER6c ExonRegion 0 874.46 693.57 1279.07 949.61 2320.66 1754.11 1429.35 1093.40 622.03 1160.41 2461.06 2798.87 1623.16 1955.51 2677.90 2060.69 1516.32 584.84 831.43 744.99 412.09 1047.15 557.79 36 E6a_E7a KnownJunction 0 1280.23 983.05 1631.17 1151.93 5307.90 4113.09 3553.07 1311.82 738.85 1468.81 3186.39 3169.18 1817.58 2669.21 3707.16 2160.20 2355.30 492.42 996.64 948.79 743.92 1264.47 656.36 37 E6a_E8c NovelJunction 0 0.00 0.00 4.85 4.69 0.00 16.47 2.25 18.15 8.77 0.00 10.11 13.50 0.00 0.00 11.62 10.60 17.58 2.57 0.00 0.00 0.00 0.00 0.00 38 ER7a ExonRegion 0 936.50 912.86 1564.22 1131.41 3641.55 3116.30 2733.00 1257.50 743.08 1474.13 3396.00 2962.49 1707.17 2441.91 3173.82 1928.91 2485.05 507.45 869.27 882.42 750.88 1179.38 584.55 39 ER7b ExonRegion 0 1822.05 1437.35 1780.39 1244.54 1598.35 1486.60 1633.07 1336.25 809.57 1575.73 3681.73 3499.10 1803.02 2603.40 3050.04 1973.87 2459.89 702.69 880.63 848.33 835.86 1322.55 665.64 40 E7_Db KnownBoundary 0 4014.49 1841.51 2047.62 1372.22 1407.90 680.23 921.98 1442.93 876.96 1639.87 3143.53 3563.96 2465.75 2968.46 3497.13 2245.31 2305.28 820.49 976.59 832.01 969.53 1221.73 782.35 41 E7c_E8b KnownJunction 0 3.70 0.00 0.00 0.00 0.00 0.00 3.97 0.00 0.00 0.00 2.32 5.55 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 E7c_E8c KnownJunction 0 3651.68 1608.40 2220.41 1309.79 1416.13 744.63 1099.74 1489.96 941.02 1724.40 3048.35 2442.95 1388.22 2725.37 3685.90 2082.87 2709.95 661.31 1037.30 894.14 941.05 1578.23 530.53 43 ER7c ExonRegion 0 3138.65 1474.48 1986.73 1237.05 1223.62 618.54 859.74 1385.53 859.60 1630.36 3168.09 2851.53 2047.82 2779.36 3214.97 2075.93 2426.38 741.56 983.00 829.08 958.10 1386.58 650.27 44 E7_Dd NovelBoundary 0 261.53 20.13 12.65 36.69 49.58 25.61 26.54 52.74 26.85 34.89 38.69 32.26 33.28 14.54 17.68 21.53 32.73 2.57 4.80 9.46 6.24 36.74 0.00 45 ER7d ExonRegion 0 27.33 0.27 3.36 7.05 13.26 8.29 14.05 2.78 2.95 6.08 3.53 6.78 0.00 9.32 8.70 6.33 1.58 1.37 2.08 3.42 0.00 6.70 1.53 46 ER8a ExonRegion 0 185.97 16.91 18.14 62.81 85.08 66.17 68.92 55.36 21.04 28.63 34.14 59.82 59.07 32.71 39.42 37.33 21.25 4.79 9.38 24.84 5.31 33.28 16.10 47 E8_Ab KnownBoundary 0 347.32 16.31 17.39 82.64 73.17 45.66 60.72 65.84 17.65 29.60 44.75 60.77 86.52 31.20 26.70 36.83 26.74 1.99 16.94 32.66 3.09 34.05 8.02 48 E8_Ac KnownBoundary 0 205.22 25.72 12.39 59.80 79.29 61.56 42.75 49.25 14.44 25.38 60.86 80.13 69.15 24.25 51.92 12.13 41.98 5.93 3.58 28.38 33.98 30.13 0.00 49 ER8b ExonRegion 0 386.31 78.74 103.13 141.85 126.83 83.47 94.58 137.38 56.67 104.00 190.74 181.14 152.14 145.52 177.90 111.16 154.88 33.11 49.05 65.36 61.44 95.51 29.01 50 ER8c ExonRegion 0 3110.47 1277.48 2111.79 1353.92 1343.74 760.67 1078.52 1524.43 938.12 1724.55 3209.80 3331.19 1675.96 3009.18 3768.50 2130.56 2816.17 658.51 968.84 940.26 1073.88 1594.77 605.06 51 ER8d ExonRegion 0 2548.66 1170.74 1651.42 1074.41 1885.14 937.66 1118.90 1301.42 780.27 1442.92 3359.15 3275.88 1333.35 3122.92 3634.25 2212.62 2302.42 620.79 1000.25 939.11 1125.64 1377.02 680.96 52 E8b_E9a KnownJunction 0 1837.96 1015.54 1493.50 943.94 1759.68 877.51 1363.83 1217.39 713.45 1284.06 2663.20 3066.55 1273.78 3053.58 3949.82 1747.75 1769.33 566.46 956.36 879.44 965.15 1134.23 641.85 53 ER9a ExonRegion 0 1175.68 681.78 935.96 577.86 943.13 549.16 648.37 717.71 440.51 830.17 1416.01 1413.43 629.53 1562.30 1870.18 983.50 963.64 321.07 465.95 426.12 499.48 861.04 321.97 54 ER9b ExonRegion 1 421.72 336.56 75.67 56.56 143.15 111.86 143.98 74.32 40.76 89.17 108.24 158.03 96.15 122.62 182.78 85.45 118.01 14.32 40.61 38.30 10.47 58.34 35.97 55 ER9c ExonRegion 0 258.74 204.37 34.31 37.82 97.00 62.81 85.06 43.21 22.23 47.02 64.75 90.92 68.01 77.15 95.74 57.96 77.57 6.01 20.70 23.94 6.06 33.34 16.89 56 ER9d ExonRegion 0 45.51 40.33 5.21 9.31 24.97 10.09 17.98 9.07 6.18 10.99 14.50 22.73 12.12 15.84 18.13 11.39 27.23 0.31 1.06 7.80 2.20 8.68 4.65