Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RSRC2 Gene 0 446.93 448.83 280.91 434.89 443.50 381.80 488.72 252.09 192.15 242.61 361.65 531.13 254.98 351.97 300.54 268.90 304.46 193.20 167.30 238.35 150.10 232.83 151.85 2 418773 Transcript 0 0.00 0.00 0.02 0.17 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 433877 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 344591 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 354654 Transcript 0 0.00 9.80 1.63 7.46 0.00 0.00 13.96 2.38 1.79 3.98 4.32 0.00 0.00 3.00 0.00 0.00 7.67 8.83 0.00 0.00 0.00 0.00 0.00 6 331738 Transcript 0 246.93 309.35 135.30 280.25 476.66 436.06 433.32 125.73 95.02 157.17 350.77 568.69 587.62 164.81 151.80 77.33 173.07 117.69 43.01 209.65 43.68 118.73 64.53 7 392442 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 ER1a ExonRegion 0 0.00 1.02 0.00 0.68 1.34 2.75 0.66 0.00 0.00 0.57 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 9 ER1b ExonRegion 1 423.51 258.30 48.97 78.65 227.81 446.07 413.87 66.57 56.58 83.07 222.42 14.02 2.27 203.55 90.71 318.43 259.87 93.99 105.10 128.48 187.61 82.33 191.02 10 E1a_E2a KnownJunction 1 43.79 30.59 28.98 31.00 8.15 42.87 42.04 16.10 19.01 34.54 25.43 47.72 13.47 12.07 4.45 12.22 54.98 6.22 4.42 3.26 37.87 0.00 4.18 11 I1 Intron 0 44.10 13.28 12.12 11.40 20.20 15.85 85.74 41.08 11.99 9.15 44.57 83.31 70.93 40.48 27.56 56.63 56.72 12.40 12.65 32.74 15.62 27.59 17.83 12 I1_AR1 ActiveIntronRegion 0 33.50 8.63 6.29 6.85 8.23 11.82 51.28 16.96 7.28 5.37 38.92 32.56 35.03 40.03 20.08 63.80 43.29 15.86 15.15 28.05 25.17 12.67 18.06 13 I1_AR2 ActiveIntronRegion 0 38.43 5.81 11.28 10.15 29.78 39.12 160.37 27.91 10.61 7.48 48.41 82.45 98.49 46.44 26.41 50.96 21.05 21.56 15.33 30.90 3.70 23.22 18.51 14 I1_SR2 SilentIntronRegion 0 50.02 12.93 18.64 15.75 18.10 20.61 85.17 53.85 15.67 11.69 50.14 111.07 83.76 43.77 30.60 37.16 48.31 15.04 14.05 29.41 7.20 31.33 18.68 15 I1_AR3 ActiveIntronRegion 0 41.44 11.48 12.33 12.21 19.88 14.29 96.04 53.27 12.78 5.98 50.29 81.72 56.51 41.23 26.90 63.12 75.77 8.98 9.77 34.48 17.98 26.09 16.58 16 I1_SR4 SilentIntronRegion 0 60.14 19.32 14.60 13.37 28.99 13.96 89.58 43.11 12.43 10.91 41.15 92.92 79.82 35.76 28.83 52.71 56.69 10.53 8.51 32.59 13.09 35.28 14.48 17 I1_AR4 ActiveIntronRegion 0 28.77 19.66 16.96 12.22 19.20 27.52 104.19 56.51 14.82 13.77 56.14 142.63 148.91 40.11 30.11 38.89 60.39 12.34 18.49 24.96 18.38 23.81 17.08 18 I1_SR5 SilentIntronRegion 0 46.74 15.05 13.29 14.34 25.79 20.68 108.40 51.27 17.03 18.51 45.71 124.51 118.65 48.17 40.58 72.93 57.65 15.67 24.61 47.55 10.37 49.57 27.96 19 I1_AR5 ActiveIntronRegion 0 17.39 8.29 5.17 1.24 19.13 11.80 68.87 18.90 6.10 4.99 34.81 80.86 63.18 38.53 22.07 31.02 47.72 8.08 2.78 26.33 6.58 9.33 17.00 20 E2_Aa NovelBoundary 1 39.71 15.79 11.86 9.29 7.56 18.40 109.88 42.92 16.87 18.02 53.65 93.93 129.54 50.74 33.01 64.68 82.75 14.59 17.79 57.85 8.96 25.47 12.63 21 ER2a ExonRegion 0 117.03 164.07 126.33 203.15 134.67 85.22 157.35 175.39 136.64 176.96 434.32 253.20 186.59 338.13 183.28 270.01 367.49 134.94 148.41 228.07 188.05 162.58 187.65 22 E2a_E3a KnownJunction 1 332.21 370.13 231.57 395.89 512.90 255.25 363.64 219.09 191.75 200.82 338.51 519.02 403.87 377.54 302.99 588.39 261.34 227.66 274.74 329.24 91.86 272.55 429.12 23 ER3a ExonRegion 1 231.66 322.74 199.93 355.96 492.52 382.72 378.11 194.88 174.91 197.32 385.39 553.78 493.41 301.05 200.05 307.68 246.89 198.68 157.10 260.49 94.86 205.65 218.18 24 E3a_E4a KnownJunction 1 50.01 65.58 24.39 20.48 184.30 109.82 95.70 65.51 38.74 18.62 75.23 177.21 110.22 103.54 64.65 64.43 74.61 49.58 35.01 81.81 42.19 35.27 62.83 25 E3a_E5a KnownJunction 0 0.00 9.80 1.63 7.46 0.00 0.00 13.96 2.38 1.79 3.98 4.32 0.00 0.00 3.00 0.00 0.00 7.67 8.83 0.00 0.00 0.00 0.00 0.00 26 E3a_E5b KnownJunction 1 246.93 309.35 135.30 280.25 476.66 436.06 433.32 125.73 95.02 157.17 350.77 568.69 587.62 164.81 151.80 77.33 173.07 117.69 43.01 209.65 43.68 118.73 64.53 27 I3 Intron 1 27.29 64.71 19.95 44.89 61.86 76.29 121.42 40.25 34.95 44.94 48.00 130.76 64.58 75.59 16.53 61.92 64.16 33.15 24.48 54.32 34.97 66.44 31.34 28 I3_AR1 ActiveIntronRegion 0 26.31 57.15 20.37 44.52 60.61 76.45 124.88 41.17 37.93 44.30 47.98 152.25 86.14 68.32 13.55 47.30 49.40 23.33 14.43 51.73 24.96 68.12 26.68 29 I3_SR1 SilentIntronRegion 1 30.03 52.87 22.13 60.30 63.33 85.79 117.56 42.11 36.50 42.83 54.79 148.71 51.11 102.08 9.88 78.74 94.43 37.81 33.75 70.24 51.36 65.83 41.54 30 I3_AR2 ActiveIntronRegion 1 28.10 77.02 19.09 42.36 63.47 74.51 118.63 38.94 31.12 46.45 46.88 100.99 40.94 79.50 21.75 76.95 76.53 44.60 35.19 54.50 44.20 64.87 35.17 31 E4_Aa NovelBoundary 0 60.16 185.76 27.47 74.65 113.16 60.76 202.88 64.28 52.57 77.50 52.54 138.35 47.07 70.22 26.82 123.56 69.28 50.78 49.70 51.07 31.07 108.26 15.02 32 ER4a ExonRegion 1 75.57 140.55 29.43 54.19 180.07 183.95 253.25 87.35 56.22 37.23 105.60 223.61 173.93 136.72 87.94 124.66 108.46 52.08 74.07 86.04 43.30 100.45 55.92 33 E4_Da NovelBoundary 0 30.82 86.63 17.50 65.19 50.42 84.84 172.50 46.41 48.44 39.25 12.16 112.24 99.18 53.62 18.91 52.98 47.50 9.41 17.32 53.43 27.24 110.16 11.87 34 E4a_E5a KnownJunction 0 22.15 110.97 23.74 31.36 35.65 45.49 90.71 40.38 26.85 26.84 44.75 92.28 35.55 31.79 38.20 23.93 37.59 16.04 12.33 30.49 5.68 17.33 12.04 35 E4a_E5b KnownJunction 1 27.63 59.86 13.51 18.11 34.21 57.81 84.00 38.03 18.69 15.69 37.59 145.40 203.07 53.21 48.95 20.59 33.66 11.32 19.11 14.76 21.62 49.17 15.71 36 ER4b ExonRegion 1 93.73 161.23 39.91 66.59 89.83 139.11 213.16 85.93 56.11 63.08 98.85 256.06 279.39 109.28 104.86 58.59 75.92 40.91 51.42 60.49 28.33 89.29 39.02 37 I4 Intron 0 76.77 72.23 25.04 59.37 80.24 96.49 131.46 55.01 41.81 57.88 47.69 152.92 92.95 57.02 28.58 42.65 57.57 17.37 22.56 62.20 16.68 79.33 23.01 38 I4_AR1 ActiveIntronRegion 0 53.00 54.94 17.48 44.69 74.65 94.05 124.00 47.88 37.11 47.32 46.27 135.19 81.05 58.86 21.34 48.18 64.03 22.07 22.16 56.17 23.49 63.81 26.22 39 I4_SR1 SilentIntronRegion 1 62.69 68.80 42.54 67.53 80.02 68.64 113.51 76.71 49.43 87.22 81.83 124.32 46.79 54.37 47.59 45.43 111.29 22.79 30.87 93.97 26.65 96.34 25.17 40 I4_AR2 ActiveIntronRegion 0 105.78 92.93 32.74 76.16 87.05 101.60 141.86 62.03 46.90 68.37 47.13 176.13 110.36 55.23 35.81 36.14 46.46 11.56 22.53 67.24 8.09 96.54 19.19 41 E5_Aa NovelBoundary 1 263.90 199.50 57.77 134.61 174.36 140.26 246.56 77.51 43.11 73.95 61.54 89.88 111.84 53.68 74.91 38.02 80.04 11.23 4.33 104.76 15.26 55.60 20.91 42 E5_Ab NovelBoundary 1 367.69 324.81 82.73 134.32 227.59 253.66 295.67 128.03 72.02 101.22 113.24 336.41 409.06 103.13 155.76 85.53 139.97 55.05 37.46 89.04 17.42 104.53 52.84 43 ER5a ExonRegion 1 149.90 216.89 51.41 95.88 114.94 151.89 189.50 81.46 60.57 76.39 102.44 243.77 254.49 84.24 108.23 65.39 100.46 47.96 32.68 72.43 17.15 70.75 41.62 44 ER5b ExonRegion 1 749.28 734.92 418.59 737.51 754.59 764.55 932.44 383.64 299.67 370.43 581.38 1120.49 848.82 604.86 446.98 370.30 497.76 357.74 223.31 484.65 203.56 359.94 228.39 45 E5a_E6a KnownJunction 1 1299.42 1058.63 505.27 763.31 1033.19 712.20 1000.42 416.20 341.37 382.49 612.26 1494.49 1489.03 830.36 603.25 462.44 606.36 493.54 250.45 553.46 331.19 350.44 270.69 46 ER6a ExonRegion 0 546.88 689.42 432.88 652.62 592.10 482.75 663.82 335.37 268.01 308.65 523.65 946.24 609.27 684.21 430.71 471.74 599.37 462.33 286.82 376.91 327.25 286.57 280.29 47 E6a_E7a KnownJunction 0 795.70 948.78 441.85 625.89 725.21 728.67 1028.73 310.64 238.74 293.28 490.44 698.63 421.89 675.26 354.53 421.09 535.20 319.77 233.61 360.24 317.54 235.63 279.91 48 ER7a ExonRegion 0 652.06 672.92 376.56 592.93 616.84 637.73 751.61 316.62 244.45 281.04 544.18 631.64 342.60 610.23 358.15 462.73 516.07 454.32 280.13 329.54 277.85 308.34 240.83 49 E7a_E8a KnownJunction 0 1080.34 668.50 403.95 659.79 947.28 722.37 876.36 320.38 207.43 295.83 381.15 559.08 363.29 592.74 406.21 475.69 411.31 390.91 268.43 280.53 192.93 216.89 253.19 50 I7_SR2 SilentIntronRegion 0 30.59 18.30 22.41 33.23 45.97 19.00 58.13 23.88 11.04 11.19 22.14 25.84 44.02 27.59 27.41 55.93 24.31 14.55 32.13 25.53 7.81 26.71 15.20 51 ER8a ExonRegion 0 592.23 557.71 376.39 637.80 718.74 609.12 771.39 301.29 229.81 310.08 518.11 655.16 268.62 614.77 386.59 513.25 480.53 321.39 315.95 301.62 311.85 320.32 273.95 52 E8a_E9a KnownJunction 0 266.94 334.35 216.99 341.75 290.75 277.17 406.56 186.56 140.16 202.00 180.57 270.69 134.73 237.74 175.04 154.57 228.24 134.60 113.13 159.92 175.32 165.21 106.11 53 E8a_E9b KnownJunction 0 313.39 222.99 153.39 358.16 194.57 205.39 288.34 179.99 110.56 145.14 168.41 224.47 120.28 215.26 157.61 126.21 197.66 134.89 119.16 111.15 143.82 193.50 101.84 54 ER9a ExonRegion 0 250.81 321.81 248.75 395.92 256.20 249.86 358.46 212.60 159.02 225.37 195.71 295.49 168.84 271.63 210.34 193.93 222.81 108.56 121.84 174.47 184.56 184.91 95.44 55 ER9b ExonRegion 0 622.89 679.71 351.00 515.03 524.43 465.78 579.67 284.03 229.36 287.52 410.50 643.20 229.95 479.41 374.34 342.47 386.61 252.45 215.85 288.23 266.02 244.89 201.91 56 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 E9a_E12a KnownJunction 0 872.97 694.02 385.02 591.53 863.41 634.75 890.01 308.47 264.29 324.36 521.45 645.06 258.75 467.30 484.33 370.84 326.60 294.32 203.39 311.72 149.25 352.77 196.42 58 E9a_E13a NovelJunction 0 6.45 10.06 32.88 4.40 7.13 6.93 30.69 17.25 5.18 1.24 4.58 0.00 0.00 0.00 13.35 3.25 25.81 9.12 0.00 0.00 17.48 5.82 11.44 59 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60 ER10a ExonRegion 0 0.00 0.00 0.09 0.68 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 ER11a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62 ER12a ExonRegion 0 718.43 627.32 377.32 551.42 818.78 642.71 830.23 299.85 246.03 312.92 532.55 688.90 249.32 431.89 445.86 368.07 303.02 278.79 199.15 294.72 143.95 281.78 199.46 63 ER12b ExonRegion 0 706.54 556.76 397.55 552.99 749.59 639.73 842.75 314.08 244.38 330.47 480.81 726.11 255.61 414.03 517.87 354.53 295.67 245.09 192.71 278.65 116.72 240.35 210.28 64 ER12c ExonRegion 0 669.88 460.61 395.79 545.15 660.91 595.07 789.74 326.68 240.85 336.04 458.10 690.55 246.23 429.58 533.83 347.74 303.68 219.88 187.94 287.23 90.35 251.06 199.69 65 ER12d ExonRegion 0 606.23 446.37 398.86 546.52 602.62 544.11 745.11 330.63 236.26 321.87 449.54 703.85 207.70 419.60 465.65 312.29 297.08 190.05 182.25 277.96 79.33 249.72 182.28 66 E12c_E13a KnownJunction 1 667.16 452.35 448.15 617.97 610.19 435.94 714.29 386.10 284.84 356.59 496.02 672.07 153.89 365.41 422.77 228.91 320.15 157.03 158.12 310.64 73.58 228.77 129.15 67 ER12e ExonRegion 0 557.05 412.33 402.27 562.87 559.74 451.46 640.86 352.28 268.31 328.45 484.33 650.66 168.62 384.84 434.36 252.77 311.54 182.22 181.87 290.17 69.26 238.02 149.63 68 ER13a ExonRegion 0 528.62 488.76 358.60 503.28 523.81 366.14 516.57 342.61 232.96 307.34 390.05 607.78 157.25 293.99 402.22 220.06 251.44 124.76 166.20 226.92 80.39 316.74 104.01 69 E13_Da KnownBoundary 0 185.96 259.76 149.64 309.48 312.05 179.39 210.08 119.11 139.29 147.10 95.39 207.82 62.01 111.72 175.41 80.49 58.25 11.40 58.26 114.60 31.94 116.22 31.33 70 ER13b ExonRegion 0 105.65 135.66 107.69 230.69 125.09 77.62 91.58 72.54 82.42 108.20 43.36 103.05 32.59 33.74 52.60 28.84 24.86 21.23 31.46 58.66 11.32 68.31 16.05 71 IG28_AR2 ActiveIntergenicRegion 0 6.65 10.91 10.65 10.33 11.13 1.63 16.58 8.09 9.08 7.16 3.46 4.80 3.47 4.33 8.12 2.67 2.96 7.02 1.91 10.15 2.31 3.73 6.12