Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 BRAP Gene 0 62.62 100.70 61.31 92.54 118.77 109.97 119.39 81.56 72.11 96.02 86.87 107.98 93.42 88.46 69.62 85.26 76.25 76.90 61.63 75.64 48.46 54.10 42.68 2 327551 Transcript 0 67.37 80.60 63.77 54.11 68.17 117.03 120.24 85.38 73.13 102.62 147.92 158.92 140.28 163.89 109.56 136.05 134.13 122.75 72.88 100.71 60.88 53.21 70.44 3 419234 Transcript 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.40 0.00 8.76 0.00 0.00 0.00 4 ER1a ExonRegion 0 8.21 7.15 3.21 4.95 5.69 22.09 11.15 5.33 6.11 15.18 33.74 7.44 17.62 40.92 14.36 24.44 33.26 13.23 15.08 15.49 31.13 13.98 14.64 5 E1a_E2a KnownJunction 1 2.82 0.00 16.71 10.39 7.47 22.15 14.66 31.22 21.64 29.95 31.17 12.90 114.44 107.25 23.98 160.90 34.22 61.27 70.68 52.92 36.02 46.84 91.08 6 ER2a ExonRegion 0 13.12 54.54 25.20 46.84 46.69 106.26 76.18 51.47 55.49 76.51 103.22 89.93 88.79 100.07 54.75 106.30 80.61 97.06 66.44 70.13 60.67 56.63 53.42 7 E2a_E3a KnownJunction 0 13.48 50.19 23.24 29.83 80.81 71.10 116.32 63.46 39.35 72.15 111.55 91.68 100.32 108.95 41.29 78.01 78.63 48.04 51.95 63.73 53.68 36.07 24.16 8 E2a_E4a NovelJunction 0 0.00 0.00 0.00 1.40 0.00 14.37 4.15 2.22 1.79 4.35 10.06 7.65 0.00 4.94 0.00 3.50 0.00 0.00 0.00 0.00 2.53 7.47 11.87 9 I2_AR1 ActiveIntronRegion 0 6.05 11.87 5.00 18.50 17.96 4.86 23.39 18.15 9.13 21.44 0.82 5.16 8.64 1.33 6.58 8.24 1.55 5.01 6.16 4.76 1.86 3.52 2.42 10 E3_Aa NovelBoundary 0 19.78 17.23 5.65 9.22 23.51 29.98 46.81 27.60 9.26 15.45 0.00 0.00 0.00 7.30 19.66 4.19 3.55 5.22 8.47 14.51 0.00 3.00 0.00 11 ER3a ExonRegion 0 46.07 52.62 47.65 78.61 88.78 76.96 99.08 88.66 101.72 113.80 173.58 190.87 177.28 169.72 99.87 154.60 140.94 135.26 92.01 104.94 82.77 98.22 58.13 12 E3a_E4a KnownJunction 0 57.20 27.03 40.60 59.47 106.96 107.84 99.37 69.09 86.66 93.18 169.46 188.46 195.77 199.72 105.20 142.27 118.75 76.90 66.73 95.56 46.83 107.77 50.19 13 E4_Aa NovelBoundary 0 26.52 2.63 3.67 3.40 12.39 2.90 14.79 8.09 11.11 11.36 0.00 0.00 14.77 4.77 5.19 0.00 0.00 0.00 22.87 3.26 3.15 0.00 4.01 14 ER4a ExonRegion 0 68.85 93.89 53.73 68.59 111.99 129.53 142.37 88.73 100.27 112.56 168.42 239.58 202.61 179.76 96.50 155.08 139.61 124.91 84.31 94.23 80.54 85.96 62.80 15 E4a_E5a KnownJunction 0 47.64 79.46 58.90 43.82 39.13 127.71 158.10 86.67 86.05 107.61 139.04 148.10 130.84 194.95 101.00 165.00 147.26 97.08 63.53 100.99 48.50 48.01 52.24 16 E4a_E6a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.40 0.00 8.76 0.00 0.00 0.00 17 ER5a ExonRegion 0 72.52 93.79 56.90 70.70 62.32 94.70 100.52 77.22 72.02 93.13 148.26 181.61 180.77 151.27 104.57 142.32 115.99 143.04 79.63 93.95 72.55 54.48 65.43 18 E5_Da NovelBoundary 0 6.96 44.20 18.07 37.89 33.62 2.50 22.61 5.42 22.83 17.65 0.00 6.30 0.00 0.00 14.09 29.99 8.32 7.63 19.01 8.88 2.53 2.33 4.35 19 E5a_E6a KnownJunction 0 81.94 68.54 75.51 47.81 103.06 128.68 102.10 92.25 61.31 107.13 156.46 147.05 109.25 145.45 123.12 100.83 139.13 128.13 75.48 107.19 61.59 57.13 93.64 20 E5a_E7a NovelJunction 0 3.78 0.00 5.00 1.83 3.40 5.51 6.71 4.31 4.46 1.67 4.69 7.35 0.00 6.77 0.00 22.13 9.16 0.00 4.42 0.00 3.09 3.12 4.27 21 I5_AR2 ActiveIntronRegion 0 13.70 20.41 7.59 24.33 19.25 4.45 20.62 21.71 13.10 18.50 2.04 10.75 9.36 1.86 7.99 5.37 8.42 8.77 7.70 11.95 1.53 3.17 4.08 22 E6_Aa NovelBoundary 0 23.04 41.70 9.67 23.54 7.64 33.50 33.61 36.47 21.01 26.57 2.47 6.30 19.64 14.36 8.90 21.36 17.67 45.14 27.39 22.95 2.90 0.00 3.59 23 ER6a ExonRegion 0 43.27 70.49 48.11 51.04 50.70 84.31 87.95 73.64 57.79 104.31 123.47 131.57 132.20 124.21 91.61 109.59 110.83 114.99 47.22 81.09 72.62 46.62 50.00 24 E6_Da NovelBoundary 0 13.78 5.53 13.78 34.29 3.99 8.52 27.65 28.71 13.57 18.00 6.58 7.65 27.11 6.83 4.45 11.79 11.78 37.56 17.41 26.97 8.71 5.69 11.27 25 E6a_E7a KnownJunction 0 79.87 114.26 73.09 80.21 110.87 137.53 141.89 49.70 84.43 112.26 137.40 141.50 180.67 159.93 124.73 166.02 112.20 176.22 60.52 107.19 102.18 87.56 100.47 26 I6 Intron 0 8.87 15.79 6.36 19.02 19.23 11.33 22.46 15.49 12.92 16.84 3.06 6.75 8.11 4.24 6.50 13.45 6.27 18.47 16.19 14.26 6.32 3.96 7.98 27 I6_SR1 SilentIntronRegion 0 8.98 17.84 7.57 19.58 17.54 7.96 25.66 24.83 16.68 20.10 4.10 9.82 9.76 4.17 9.92 18.34 10.18 26.48 26.10 19.90 12.53 4.82 8.78 28 I6_AR3 ActiveIntronRegion 0 13.84 30.35 3.68 5.87 8.03 13.05 19.96 14.49 12.26 9.88 1.86 11.16 9.56 7.62 4.69 23.66 6.60 22.10 23.40 23.32 4.07 0.00 6.66 29 I6_AR4 ActiveIntronRegion 0 13.04 21.58 9.89 26.90 21.96 14.55 19.03 20.64 16.83 23.30 5.58 4.01 8.19 4.93 9.96 23.25 8.37 29.79 21.76 20.60 8.28 4.54 15.43 30 I6_AR5 ActiveIntronRegion 0 7.31 15.90 8.49 25.72 24.51 12.37 27.73 15.78 16.65 24.52 2.70 10.80 3.36 8.09 5.02 9.12 6.57 17.49 18.25 15.07 8.75 6.21 7.77 31 E7_Aa NovelBoundary 0 26.82 9.34 5.06 36.13 41.85 29.19 71.06 27.68 9.52 19.58 0.00 6.00 26.46 4.41 0.00 28.97 4.77 10.82 12.99 18.66 6.24 5.94 8.71 32 ER7a ExonRegion 0 70.10 120.14 46.87 78.04 132.87 117.99 148.30 59.13 61.56 100.67 151.91 133.70 147.06 159.55 121.01 124.16 111.84 107.56 63.67 77.27 92.96 74.29 78.52 33 E7_Da NovelBoundary 0 59.71 47.69 20.25 35.13 47.20 46.90 44.43 17.87 17.07 15.88 4.32 6.15 13.96 9.36 6.18 19.23 0.00 20.10 8.85 15.08 0.00 5.20 6.74 34 E7a_E8a KnownJunction 0 107.95 126.03 44.38 100.35 163.41 151.84 185.44 86.34 65.33 115.72 229.58 183.66 134.73 218.91 113.23 164.06 100.33 143.51 95.81 102.40 102.24 96.32 108.41 35 I7 Intron 0 6.73 30.90 6.02 12.19 34.04 14.04 17.62 7.28 6.29 8.05 2.28 9.12 8.74 2.63 4.02 5.25 1.94 4.98 7.13 9.02 3.37 3.93 4.15 36 I7_SR1 SilentIntronRegion 0 6.76 31.03 6.05 12.25 34.19 14.08 17.70 7.31 6.32 8.09 2.29 9.16 8.78 2.65 4.03 5.28 1.95 5.00 7.16 9.05 3.39 3.94 4.17 37 E8_Aa NovelBoundary 0 41.86 30.72 33.29 23.91 27.59 20.27 32.59 16.06 18.37 19.02 5.37 6.00 0.00 5.00 4.45 24.69 4.11 33.91 26.07 17.39 17.36 0.00 12.38 38 ER8a ExonRegion 0 78.78 110.94 71.16 106.77 123.74 116.73 140.72 82.10 79.03 97.02 154.41 107.86 137.83 147.67 86.08 118.54 113.37 117.95 65.31 96.16 94.87 65.26 70.12 39 E8_Da NovelBoundary 0 17.78 48.87 7.86 34.49 28.27 14.08 16.38 19.26 11.28 13.03 0.00 5.70 6.82 2.47 8.90 3.85 4.77 18.74 21.84 14.83 5.75 0.00 0.00 40 E8a_E9a KnownJunction 0 101.50 115.57 60.20 91.86 161.88 113.97 156.38 79.56 69.30 108.36 168.04 148.25 158.92 160.10 85.79 115.44 85.55 72.00 26.17 76.13 83.52 56.46 63.60 41 I8 Intron 0 7.67 17.38 9.52 15.30 20.16 6.64 12.85 11.57 5.87 6.69 0.56 4.46 1.12 0.76 1.53 3.44 2.39 11.98 14.31 6.78 2.55 1.51 3.40 42 I8_AR1 ActiveIntronRegion 0 9.19 19.90 11.29 19.10 23.26 7.63 14.86 14.44 7.03 8.35 0.70 4.33 0.70 0.95 1.91 4.29 2.39 14.95 16.72 8.47 2.79 1.15 4.25 43 ER9a ExonRegion 0 107.27 142.61 87.50 129.14 166.60 121.36 168.48 99.75 75.31 106.86 156.09 170.34 176.00 180.09 119.93 125.83 126.51 82.93 59.65 94.00 56.35 96.13 61.48 44 E9_Da NovelBoundary 0 6.00 22.69 2.63 30.83 40.15 7.10 17.89 18.20 18.00 19.93 0.00 0.00 0.00 0.00 6.30 7.26 4.68 15.17 15.44 14.70 8.77 5.08 0.00 45 E9a_E10a KnownJunction 0 74.24 138.00 48.61 88.07 151.36 130.04 185.84 96.24 75.64 110.72 112.13 189.06 161.35 101.95 123.00 104.25 84.15 54.51 61.93 77.85 37.25 82.79 42.85 46 I9 Intron 0 8.67 15.22 8.05 19.28 19.28 10.54 15.96 12.38 11.53 12.86 1.29 3.89 5.67 1.93 3.78 6.67 3.90 14.01 9.91 11.31 2.60 2.38 5.55 47 I9_AR2 ActiveIntronRegion 0 3.33 12.20 3.68 8.18 8.03 12.84 16.83 10.12 6.00 6.88 0.00 1.86 4.69 3.94 5.80 5.10 4.72 19.80 0.00 11.25 0.00 4.17 0.00 48 I9_AR3 ActiveIntronRegion 0 6.45 20.72 12.40 23.58 27.56 13.67 24.48 25.68 21.18 20.90 1.09 3.96 8.41 2.52 2.43 5.25 3.56 15.89 7.61 15.44 3.41 2.99 3.30 49 E10_Aa NovelBoundary 0 14.15 16.51 17.83 30.97 39.39 13.46 39.61 23.70 16.23 24.50 2.53 17.11 8.28 0.00 0.00 8.72 0.00 22.34 4.52 9.01 2.78 0.00 12.46 50 ER10a ExonRegion 0 92.56 107.73 81.21 119.59 172.59 156.95 195.18 109.18 94.07 119.52 155.21 212.10 197.14 145.21 118.73 111.59 118.10 63.30 68.27 81.39 32.13 82.53 62.94 51 E10_Da NovelBoundary 0 0.00 30.26 12.36 28.07 19.02 0.00 49.82 22.88 21.33 13.00 2.11 0.00 6.01 7.42 4.45 12.48 3.74 29.47 29.46 35.79 15.01 6.06 15.62 52 E10a_E11a KnownJunction 0 148.54 121.29 79.71 138.68 260.70 152.81 188.27 133.00 95.46 118.70 199.63 278.79 198.04 165.58 137.22 103.48 89.67 57.79 73.70 88.21 14.39 117.57 52.33 53 I10 Intron 0 11.03 20.65 11.34 26.24 26.60 12.61 22.99 16.47 12.04 15.88 1.87 4.55 7.33 2.98 4.10 9.20 4.01 18.97 14.80 14.24 4.58 3.16 5.97 54 I10_AR1 ActiveIntronRegion 0 15.20 24.65 6.32 21.56 39.72 17.71 32.62 19.05 12.72 19.44 2.83 6.18 12.09 1.96 7.15 10.29 4.02 18.77 17.33 12.40 7.55 2.58 5.77 55 I10_SR1 SilentIntronRegion 0 10.74 20.38 11.71 26.60 25.67 12.25 22.31 16.30 12.00 15.63 1.80 4.44 6.99 3.06 3.88 9.13 4.01 18.99 14.62 14.38 4.37 3.20 5.98 56 E11_Aa NovelBoundary 0 6.89 23.22 15.11 23.17 27.16 9.60 29.01 25.30 25.72 32.31 0.00 0.00 27.60 0.00 0.00 3.42 4.77 5.02 4.80 12.14 5.50 6.25 0.00 57 ER11a ExonRegion 0 98.07 118.51 87.91 121.68 163.81 153.83 137.55 109.87 96.74 122.04 149.54 234.46 197.93 133.37 124.00 114.71 84.78 60.34 68.85 69.64 44.52 87.13 57.74 58 E11_Da NovelBoundary 0 10.30 25.26 22.91 46.01 30.81 19.36 47.03 25.10 25.03 43.54 0.00 0.00 6.33 2.30 8.90 0.00 0.00 7.96 8.66 11.82 0.00 5.45 4.10 59 E11a_E12a KnownJunction 0 164.18 131.95 92.63 130.42 95.93 52.30 110.27 101.17 95.43 117.31 165.99 299.65 236.02 132.03 119.17 126.21 122.39 74.08 80.19 89.61 72.09 81.44 78.53 60 I11 Intron 0 8.29 20.73 11.06 26.85 19.55 9.61 17.08 16.90 9.84 16.32 1.45 3.71 7.28 2.25 3.81 4.34 3.18 17.13 13.05 12.21 4.00 2.60 6.28 61 I11_SR1 SilentIntronRegion 0 8.31 20.77 11.08 26.91 19.59 9.63 17.12 16.93 9.86 16.35 1.45 3.72 7.29 2.26 3.82 4.35 3.18 17.17 13.08 12.23 4.01 2.60 6.29 62 E12_Aa NovelBoundary 0 14.74 0.00 7.27 36.19 20.63 2.61 6.14 16.31 19.76 35.48 2.68 5.25 0.00 0.00 9.39 12.30 0.00 33.95 12.24 5.88 0.00 5.63 21.60 63 ER12a ExonRegion 0 67.92 117.03 69.92 107.94 139.53 118.95 129.38 89.42 74.90 100.73 58.81 85.61 64.02 60.20 60.30 68.17 59.08 66.39 61.63 75.79 37.99 47.14 35.81 64 IG50 Intergenic 0 3.91 18.42 9.19 22.09 19.68 9.25 14.42 16.49 11.86 15.29 0.79 2.59 2.70 1.03 2.31 2.87 1.91 16.42 11.38 10.13 3.18 1.26 2.99 65 IG50_SR2 SilentIntergenicRegion 0 3.94 18.89 9.09 22.42 20.49 9.63 14.83 16.85 12.13 15.29 0.65 2.43 2.86 0.87 2.28 2.97 1.86 16.27 11.61 9.98 3.08 1.28 3.05 66 IG50_AR1 ActiveIntergenicRegion 0 4.44 13.73 13.40 23.11 9.37 3.02 9.66 14.83 10.08 17.65 4.09 5.71 0.00 4.77 3.77 1.41 2.79 24.23 10.45 14.21 6.04 1.00 2.05 67 IG50_SR1 SilentIntergenicRegion 0 0.00 6.48 6.30 8.62 1.52 4.45 3.30 5.93 4.84 16.42 1.22 4.42 1.31 1.04 1.53 1.01 1.47 11.99 3.63 8.78 2.63 0.68 2.56