Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MAPKAPK5 Gene 0 67.77 135.00 126.33 140.50 133.29 117.92 184.75 140.70 104.20 131.87 154.50 142.16 122.43 176.39 154.49 151.32 138.31 184.14 165.09 166.88 82.71 107.24 74.32 2 431199 Transcript 0 0.31 1.16 2.86 0.80 1.78 0.80 2.17 0.58 1.24 2.58 0.81 1.44 3.13 0.00 0.73 0.74 0.00 2.97 0.00 0.33 1.10 0.00 0.21 3 428907 Transcript 1 41.19 74.46 105.97 145.27 179.54 113.85 141.45 144.01 112.09 98.77 96.08 83.13 26.13 184.83 141.91 118.86 98.27 126.35 142.50 93.70 54.30 69.50 21.77 4 202788 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 ER1a ExonRegion 0 0.92 0.44 0.00 0.00 0.00 0.56 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.46 0.00 0.00 0.64 6 E1_Ab KnownBoundary 0 3.33 2.76 6.39 13.35 0.00 26.97 10.78 6.28 8.94 12.11 2.32 0.00 0.00 2.30 4.45 16.49 4.49 37.35 13.65 0.00 2.35 5.51 11.87 7 ER1b ExonRegion 0 8.75 18.65 15.82 12.49 10.16 28.44 34.96 26.26 19.00 20.96 30.07 13.00 9.12 45.10 27.47 28.66 30.99 29.04 25.05 35.75 17.99 18.45 16.31 8 E1a_E2a KnownJunction 0 56.08 65.51 68.12 72.62 60.87 130.49 172.50 134.68 110.24 105.54 176.62 148.40 93.18 203.78 118.55 173.72 171.95 155.66 219.68 149.95 99.96 118.61 97.31 9 E1a_E3a NovelJunction 0 0.00 14.93 8.34 3.60 0.00 5.68 2.25 0.00 1.13 3.81 7.42 0.00 0.00 18.84 0.00 0.00 0.00 16.91 14.40 2.62 2.72 2.33 0.00 10 E1a_E7a NovelJunction 0 0.00 0.00 1.63 0.00 0.00 0.00 6.45 0.00 0.00 2.71 0.00 0.00 13.64 0.00 0.00 4.36 0.00 4.19 0.00 6.52 9.45 0.00 4.01 11 I1_SR2 SilentIntronRegion 0 3.34 4.38 34.50 17.09 3.81 4.37 17.31 8.78 4.37 14.07 18.44 0.00 0.00 0.00 11.27 14.29 12.82 15.92 23.03 19.07 3.98 2.64 6.44 12 I1_AR3 ActiveIntronRegion 0 5.27 5.93 35.42 19.46 0.31 3.73 28.15 8.70 3.32 12.24 12.61 0.00 0.00 1.81 5.52 22.85 8.77 17.17 21.51 26.12 7.48 1.91 11.02 13 ER2a ExonRegion 0 46.99 93.87 89.82 96.53 100.34 125.86 154.19 140.29 115.85 129.93 204.16 167.50 76.82 203.39 121.81 192.55 208.76 185.22 202.92 207.70 97.62 122.93 93.62 14 E2a_E3a KnownJunction 0 45.86 90.77 133.79 123.09 109.34 115.50 152.71 171.11 141.67 153.46 200.37 105.33 113.95 182.83 129.55 208.75 158.58 233.05 181.65 228.44 104.77 114.45 90.57 15 E2a_E4a NovelJunction 0 0.00 0.00 10.17 0.00 0.00 5.68 6.09 2.42 5.38 4.14 7.84 7.20 13.64 7.95 0.00 3.33 8.70 18.94 4.80 10.48 5.62 0.00 3.50 16 ER3a ExonRegion 0 44.92 104.38 141.55 144.68 111.47 133.26 166.47 171.34 150.07 168.47 250.90 216.53 142.00 218.74 170.68 219.12 218.99 259.51 181.98 234.15 109.92 119.23 99.88 17 E3a_E4a KnownJunction 0 70.75 118.79 154.46 178.73 103.14 132.20 185.48 191.12 169.41 211.05 224.37 258.23 112.98 279.42 175.04 228.15 246.75 287.35 215.35 229.14 122.26 124.43 148.02 18 E3a_E5a NovelJunction 0 0.00 2.89 4.14 15.08 3.65 17.15 7.99 4.97 1.50 7.52 0.00 0.00 6.66 15.25 14.09 12.73 34.60 4.52 20.71 6.33 7.60 13.53 6.49 19 E3a_E6a NovelJunction 0 0.00 3.35 8.49 9.62 0.00 0.00 4.28 16.80 1.50 4.59 4.90 0.00 8.12 4.94 6.30 3.42 4.77 11.52 0.00 0.00 2.35 0.00 0.00 20 ER4a ExonRegion 0 46.84 90.54 115.62 150.85 104.33 127.77 143.78 167.77 152.98 182.95 259.07 244.53 178.17 251.09 179.32 242.99 216.65 292.43 276.18 230.98 135.24 149.74 120.79 21 E4_Da NovelBoundary 0 33.34 10.00 6.74 23.14 20.63 2.73 38.86 9.41 2.89 9.62 0.00 0.00 0.00 2.47 0.00 8.46 13.28 22.68 18.45 38.35 9.08 5.57 0.00 22 E4a_E5a KnownJunction 0 34.75 114.72 92.04 116.27 47.54 105.28 132.97 104.62 104.08 161.31 158.04 165.20 126.62 193.71 282.22 172.52 154.56 240.31 224.76 206.64 88.16 153.76 92.88 23 E4a_E6a NovelJunction 0 3.78 22.69 32.82 51.08 27.16 17.94 20.58 33.06 62.21 24.71 17.06 18.01 0.00 14.83 5.44 7.78 26.83 63.51 72.57 71.78 11.43 17.64 7.51 24 E4a_E7a NovelJunction 0 3.78 15.13 21.52 25.74 4.33 13.57 11.39 7.52 19.94 1.61 10.32 25.96 6.82 7.59 9.64 11.71 17.58 22.97 4.71 33.94 18.16 4.65 3.93 25 ER5a ExonRegion 0 59.96 129.01 121.22 130.09 82.60 94.43 198.34 141.07 124.77 156.94 203.52 227.99 181.45 239.76 195.61 245.08 195.36 304.25 231.89 206.44 121.79 169.93 125.49 26 E5a_E6a KnownJunction 0 38.30 168.06 102.78 133.25 105.09 52.87 171.75 160.35 111.40 173.93 267.38 188.01 156.16 247.75 158.85 187.39 160.82 285.45 196.52 154.36 138.94 102.32 81.09 27 E5a_E6b NovelJunction 0 0.00 5.20 5.23 0.00 3.48 0.00 1.94 7.56 2.92 4.32 5.32 0.00 0.00 4.94 0.00 3.50 12.34 7.13 0.00 2.81 0.00 3.00 3.84 28 E5a_E7a NovelJunction 0 0.00 0.00 6.89 2.76 0.00 0.00 24.11 6.82 2.43 5.88 19.64 12.60 0.00 9.77 10.63 7.52 22.81 16.46 0.00 6.52 2.41 12.43 7.34 29 E5b_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 ER5b ExonRegion 0 0.00 3.05 8.58 2.39 5.35 1.83 4.96 1.73 3.71 7.74 2.42 4.33 9.38 0.00 2.18 2.23 0.00 8.31 0.00 0.53 3.31 0.00 0.00 31 E6_Ab NovelBoundary 0 8.22 32.17 46.92 60.63 27.59 28.85 65.32 75.17 42.51 77.31 101.55 45.01 91.71 48.38 18.42 64.77 38.43 121.96 75.77 65.07 44.29 27.56 19.29 32 ER6a ExonRegion 0 33.86 153.33 102.69 128.11 80.27 74.82 142.99 152.80 113.14 178.23 272.15 182.70 194.17 234.85 157.25 183.68 174.95 300.81 219.15 162.55 138.39 111.68 81.64 33 ER6b ExonRegion 0 51.59 207.33 146.17 211.81 160.99 168.11 241.38 197.98 155.71 199.59 266.79 209.50 227.00 257.36 180.46 225.53 214.25 369.57 310.70 244.05 161.62 153.71 119.75 34 E6a_E7a KnownJunction 0 70.23 221.34 184.14 256.11 222.41 281.54 423.08 256.10 187.01 221.37 250.33 252.83 232.61 266.82 225.48 206.87 230.76 425.35 272.01 242.95 153.70 110.47 87.50 35 I6 Intron 0 20.11 10.60 11.09 13.93 12.81 6.81 30.73 11.41 11.44 10.50 14.36 17.99 16.14 11.83 13.84 21.87 19.10 13.72 8.20 18.54 6.14 8.04 9.23 36 I6_SR1 SilentIntronRegion 0 20.16 10.63 11.12 13.97 12.84 6.83 30.82 11.44 11.48 10.53 14.40 18.04 16.18 11.86 13.87 21.92 19.15 13.76 8.22 18.58 6.16 8.06 9.26 37 E7_Aa NovelBoundary 0 35.27 19.73 11.86 18.91 12.22 0.00 31.05 15.77 16.15 10.07 6.74 18.01 20.13 6.95 14.34 10.77 16.55 10.36 4.80 20.13 27.49 6.12 3.59 38 ER7a ExonRegion 0 105.27 226.34 205.75 235.37 217.04 225.56 295.68 211.74 168.48 197.32 269.70 252.51 259.32 307.09 243.61 285.05 227.14 516.06 354.87 285.39 154.97 225.89 165.22 39 E7a_E8a KnownJunction 1 110.61 250.48 279.94 278.52 173.85 174.56 311.44 237.90 140.57 195.31 189.47 257.78 318.32 316.56 248.97 224.64 206.54 436.67 272.57 292.23 148.02 124.37 79.81 40 ER8a ExonRegion 0 143.74 223.99 193.78 206.96 229.42 160.15 293.25 185.26 124.56 166.68 266.55 210.01 230.62 284.52 234.75 230.87 263.75 370.78 264.70 303.28 169.39 174.68 129.07 41 E8a_E9a KnownJunction 0 66.46 182.07 145.53 173.50 159.68 187.51 216.18 121.25 68.20 122.95 180.41 124.99 155.67 244.04 126.21 190.21 212.62 313.26 175.25 212.14 120.77 113.10 69.83 42 E8a_E10a NovelJunction 0 0.00 9.08 7.16 6.93 16.72 10.90 16.78 10.39 9.58 5.00 9.05 5.40 0.00 14.24 5.81 0.00 4.77 24.79 12.99 5.88 13.90 8.82 15.45 43 ER9a ExonRegion 0 104.76 217.29 193.96 166.32 160.22 161.14 263.90 160.82 106.34 149.16 190.10 145.18 138.28 259.55 214.79 201.69 201.14 251.77 213.64 245.56 125.51 148.36 97.17 44 E9a_E10a KnownJunction 0 122.02 179.97 212.15 167.01 161.04 131.86 207.56 140.76 113.80 156.63 207.89 73.37 92.69 207.96 205.70 260.02 156.52 301.41 248.85 223.71 120.10 107.34 68.29 45 I9_AR1 ActiveIntronRegion 0 19.15 25.83 11.26 30.08 25.05 7.48 33.47 18.50 19.26 13.55 6.53 12.11 11.96 2.92 7.92 16.45 12.18 22.20 13.17 19.54 9.28 6.08 6.93 46 E10_Aa NovelBoundary 0 33.56 18.35 9.79 23.87 27.59 2.38 29.63 15.90 19.68 2.79 9.84 0.00 14.28 2.41 11.25 11.79 7.57 15.84 12.52 15.28 9.45 2.33 8.54 47 ER10a ExonRegion 0 84.68 167.07 176.96 146.36 125.78 161.45 189.84 169.77 118.98 163.98 202.28 135.07 60.93 257.72 217.57 219.67 210.00 268.38 196.07 243.73 130.73 114.71 107.25 48 E10a_E11a KnownJunction 0 101.35 146.16 164.01 164.71 135.65 182.11 227.66 173.37 120.14 170.87 173.31 116.44 58.92 227.97 235.00 210.54 196.26 271.98 143.91 191.69 105.27 87.99 105.34 49 I10 Intron 0 16.29 20.01 23.53 29.98 28.02 14.02 51.01 23.46 16.85 12.53 6.97 13.69 16.59 10.49 10.08 14.70 15.60 32.40 23.51 26.95 13.31 8.98 11.52 50 I10_SR1 SilentIntronRegion 0 17.51 30.69 27.63 25.42 37.47 10.80 67.25 29.64 16.65 15.03 9.34 15.37 20.62 8.79 8.82 19.18 17.75 32.16 34.38 30.32 9.55 9.21 10.87 51 I10_AR1 ActiveIntronRegion 0 21.21 22.32 25.79 33.49 32.25 14.92 67.02 26.23 18.09 14.72 5.17 19.74 24.00 15.58 12.99 13.14 19.61 34.31 24.75 35.50 16.33 9.97 12.27 52 I10_SR2 SilentIntronRegion 0 16.16 15.47 17.23 30.90 31.25 15.70 49.32 19.88 14.67 10.80 5.91 12.24 13.32 11.09 11.27 18.54 13.54 28.01 22.28 24.63 9.94 7.37 13.16 53 I10_AR3 ActiveIntronRegion 0 9.57 17.80 25.70 28.55 17.67 10.69 29.27 21.19 18.25 9.68 5.53 13.74 14.09 8.03 8.52 9.42 7.48 34.83 19.99 18.62 8.88 10.49 10.22 54 I10_SR3 SilentIntronRegion 0 15.88 14.71 28.97 33.88 19.04 19.70 42.35 22.80 20.87 12.18 9.14 12.19 12.52 9.17 7.55 10.81 19.79 42.46 17.37 24.12 22.41 8.69 12.49 55 E11_Aa NovelBoundary 0 20.15 25.72 43.64 29.83 30.81 8.35 47.03 29.20 21.27 16.84 2.53 31.36 19.80 7.06 4.94 11.71 20.48 42.74 7.34 57.33 10.63 23.64 16.39 56 ER11a ExonRegion 0 103.08 166.54 207.35 214.04 190.16 194.47 263.56 207.84 131.02 192.56 235.81 97.99 85.39 283.96 281.24 254.88 233.00 345.63 256.22 239.29 140.33 122.26 104.73 57 E11a_E12a KnownJunction 0 57.94 163.72 202.92 206.00 161.38 245.54 351.23 202.00 141.61 206.03 187.99 70.07 81.81 301.26 284.69 223.87 221.51 271.93 262.50 242.69 115.09 67.48 112.51 58 I11 Intron 0 12.99 13.26 9.45 28.04 22.06 9.49 39.09 10.38 9.88 8.85 8.89 18.41 6.08 5.82 1.57 11.40 21.52 17.61 15.27 17.54 7.18 12.38 7.32 59 I11_SR1 SilentIntronRegion 0 13.08 13.36 9.52 28.24 22.23 9.56 39.37 10.46 9.96 8.91 8.96 18.55 6.13 5.87 1.58 11.47 21.68 17.74 15.38 17.67 7.24 12.46 7.37 60 E12_Aa NovelBoundary 0 38.90 15.00 34.03 38.52 24.36 15.39 98.62 13.51 16.61 20.71 14.53 6.30 6.82 7.65 4.45 4.27 12.72 30.88 15.91 36.43 7.97 0.00 7.34 61 ER12a ExonRegion 0 111.50 157.09 197.67 203.95 206.38 189.43 273.12 188.37 140.27 193.00 254.24 120.96 121.05 263.61 279.22 234.23 189.74 270.76 218.83 229.42 110.26 126.09 103.85 62 E12_Da NovelBoundary 0 11.26 27.56 58.63 52.91 52.21 43.10 90.45 33.06 27.43 48.65 33.96 18.31 24.67 37.08 44.75 52.38 21.13 65.62 45.84 39.25 19.03 20.51 9.65 63 E12a_E13a KnownJunction 0 41.19 74.46 105.97 145.27 179.54 113.85 141.45 144.01 112.09 98.77 96.08 83.13 26.13 184.83 141.91 118.86 98.27 126.35 142.50 93.70 54.30 69.50 21.77 64 E12b_E13a KnownJunction 0 42.01 66.96 121.85 109.48 111.38 111.41 128.73 99.11 63.11 107.23 61.70 44.86 45.45 129.14 72.32 92.11 62.74 83.49 137.98 77.34 44.79 47.82 28.60 65 ER12b ExonRegion 0 32.81 64.06 123.35 109.49 126.21 94.75 130.85 104.00 59.08 105.32 83.76 49.79 53.15 115.04 108.80 93.13 75.92 108.09 113.08 71.99 50.69 55.56 32.79 66 I12 Intron 0 19.18 23.27 21.84 41.01 21.06 11.01 46.34 22.67 16.30 16.46 12.20 13.58 10.38 12.43 8.42 19.24 15.89 29.78 21.28 25.89 15.29 14.24 10.95 67 I12_SR1 SilentIntronRegion 0 9.33 13.42 13.02 22.11 21.98 8.59 39.66 10.24 9.82 14.29 6.39 10.86 5.64 9.91 5.00 14.22 13.13 23.31 14.49 19.91 10.15 13.11 7.63 68 I12_AR1 ActiveIntronRegion 0 15.65 19.15 22.26 40.95 16.66 11.47 45.49 24.51 19.55 17.77 14.92 17.36 10.29 12.37 7.64 17.72 14.57 29.52 21.80 27.68 16.04 14.42 11.54 69 I12_SR2 SilentIntronRegion 0 29.22 34.15 26.03 51.24 26.72 11.75 51.34 26.81 15.39 15.95 11.65 10.00 13.06 13.91 11.33 24.03 19.26 33.71 24.23 26.79 17.06 14.70 11.96 70 E13_Aa NovelBoundary 0 49.27 70.12 33.29 60.03 16.81 9.20 73.71 34.21 28.36 17.86 11.85 24.31 14.93 21.31 17.68 31.79 3.83 26.70 16.47 39.69 5.56 19.47 10.67 71 ER13a ExonRegion 0 100.99 166.83 217.61 213.64 287.45 181.72 320.94 222.59 182.70 188.56 251.92 156.69 138.69 310.08 263.27 220.28 210.25 203.29 277.46 221.94 123.58 126.76 87.34 72 E13_Da NovelBoundary 0 13.93 79.59 39.00 56.87 15.87 11.81 68.54 17.54 7.15 10.02 12.90 5.70 13.64 4.94 0.00 11.62 8.70 51.57 18.26 27.16 18.04 0.00 16.13 73 E13a_E14a KnownJunction 0 125.58 194.77 205.34 189.42 225.89 158.20 241.57 222.29 158.51 171.49 168.78 176.46 166.71 303.61 229.80 174.14 113.60 136.34 284.62 165.67 74.07 116.59 77.68 74 I13 Intron 0 13.24 24.04 16.26 27.35 23.98 7.49 40.15 12.15 8.30 10.87 5.84 7.67 10.08 7.01 5.18 9.93 9.97 23.10 12.33 18.27 5.96 4.75 7.47 75 I13_SR1 SilentIntronRegion 0 10.69 18.15 16.68 26.84 22.04 8.50 39.86 11.23 7.77 10.41 5.48 8.23 9.13 7.33 4.26 11.31 10.51 25.58 13.89 16.93 6.71 4.47 7.93 76 I13_AR1 ActiveIntronRegion 0 21.78 43.72 15.03 29.26 30.60 4.19 41.48 15.32 10.12 12.51 7.06 5.88 13.31 6.01 8.24 5.44 8.30 15.12 7.28 22.87 3.53 5.72 6.04 77 E14_Aa NovelBoundary 0 37.19 55.52 20.16 35.79 28.27 6.87 48.67 18.48 13.08 16.90 2.68 0.00 0.00 4.94 19.53 0.00 8.51 11.98 3.58 18.92 2.53 5.69 0.00 78 ER14a ExonRegion 0 113.32 215.88 193.03 218.42 247.26 160.91 300.33 244.24 158.51 200.39 167.29 240.42 211.20 183.11 197.60 147.29 112.52 96.57 178.96 156.01 65.45 158.80 77.18 79 E14_Da KnownBoundary 1 149.66 296.53 147.27 263.10 311.04 166.67 365.14 235.44 128.21 187.55 82.92 342.86 551.42 107.48 148.96 89.21 67.98 17.87 80.00 157.36 13.78 142.43 58.99 80 ER14b ExonRegion 1 69.92 172.82 92.52 173.59 150.16 79.62 176.11 129.49 96.77 122.48 40.13 186.33 169.62 56.36 85.77 45.69 36.25 24.66 67.88 116.60 6.73 82.37 24.35 81 IG4 Intergenic 0 30.50 88.92 43.25 105.13 103.60 79.27 125.49 51.01 63.97 49.48 16.48 41.16 39.47 25.04 19.90 28.68 22.47 59.55 58.91 72.45 9.67 14.29 15.06 82 IG4_SR1 SilentIntergenicRegion 0 16.15 98.80 15.43 40.29 44.35 22.23 54.27 33.23 39.58 33.35 12.01 31.91 22.66 15.57 17.37 17.67 14.95 20.82 53.08 59.98 7.11 17.18 8.84 83 IG4_AR1 ActiveIntergenicRegion 0 34.98 132.04 43.14 82.55 96.88 66.35 93.71 55.17 65.65 45.02 18.34 31.99 34.20 31.08 29.46 49.70 27.23 114.84 89.99 103.19 13.59 12.12 21.98 84 IG4_SR2 SilentIntergenicRegion 0 14.71 55.16 20.92 49.59 56.66 46.61 47.34 57.56 35.76 31.77 17.19 17.93 16.91 25.27 25.29 44.85 27.80 65.02 82.39 62.15 9.23 9.27 27.61 85 IG4_AR2 ActiveIntergenicRegion 0 30.52 62.52 36.01 80.54 99.27 77.38 129.52 40.80 50.17 41.39 17.60 29.57 41.17 30.49 23.89 35.46 29.59 58.22 72.50 69.02 12.59 12.29 19.43 86 IG4_AR3 ActiveIntergenicRegion 0 39.37 40.26 43.75 86.54 51.37 60.15 78.91 67.93 59.53 51.73 30.54 19.05 19.23 21.60 20.60 21.40 42.91 62.27 75.49 59.36 16.97 5.83 14.68 87 IG4_SR3 SilentIntergenicRegion 0 30.41 83.68 42.22 95.71 84.13 63.39 97.01 45.27 55.94 37.50 15.84 32.56 38.71 22.16 18.96 30.73 15.10 46.86 55.55 67.43 7.20 14.13 12.69 88 IG4_AR4 ActiveIntergenicRegion 0 35.87 95.87 65.40 142.93 105.35 79.11 132.64 53.73 73.63 50.24 28.67 41.15 34.50 32.83 24.68 42.89 31.37 117.35 96.08 95.74 18.10 16.03 23.03 89 IG4_SR4 SilentIntergenicRegion 0 21.94 77.33 43.80 112.48 78.17 61.38 101.88 40.23 51.61 37.91 11.82 24.55 22.23 21.86 17.56 20.85 15.07 40.50 33.50 68.81 4.41 12.07 8.13 90 IG4_AR5 ActiveIntergenicRegion 0 32.41 101.14 44.56 117.08 123.43 94.96 148.59 57.82 75.10 60.84 14.31 53.82 45.89 23.20 17.42 21.91 21.45 53.91 47.73 71.25 8.42 15.42 12.63