Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NUDT4 Gene 0 70.61 74.01 43.13 40.14 70.93 40.58 59.34 61.72 61.79 58.81 165.58 90.12 83.18 102.90 63.09 89.14 86.47 20.16 24.64 21.76 36.72 67.47 38.65 2 337179 Transcript 0 12.43 12.61 10.26 10.56 27.98 12.96 28.65 20.47 20.01 18.46 104.94 47.72 109.35 68.23 21.40 67.13 48.14 15.63 15.13 17.04 17.37 20.57 38.52 3 415493 Transcript 1 90.24 87.75 85.07 76.41 109.25 98.98 84.13 104.20 122.57 127.00 737.71 273.99 419.62 625.94 208.91 420.23 417.67 96.17 134.87 98.37 139.62 182.48 158.09 4 ER1a ExonRegion 1 2.45 5.05 9.36 4.13 1.65 10.36 7.20 6.30 18.11 19.80 176.42 3.24 9.78 117.80 53.11 105.14 109.06 26.88 29.81 13.45 73.41 24.06 45.17 5 E1a_E2a KnownJunction 1 10.59 19.40 30.63 17.38 8.57 5.45 0.00 29.74 60.73 54.50 247.90 0.00 26.95 180.65 35.11 88.52 138.38 36.31 34.07 37.97 84.76 42.68 50.79 6 I1_AR1 ActiveIntronRegion 0 1.78 6.10 3.87 1.29 3.65 5.39 6.21 3.49 2.91 1.43 13.09 2.86 4.77 5.91 5.37 11.70 16.76 5.88 2.67 5.15 11.82 4.27 8.54 7 I1_SR3 SilentIntronRegion 0 9.39 3.97 9.45 4.00 3.64 1.01 14.70 9.23 6.74 3.30 7.95 21.52 27.38 4.21 0.14 8.01 3.49 0.00 1.55 0.14 0.46 1.92 0.00 8 I1_AR4 ActiveIntronRegion 1 5.08 0.00 8.27 2.73 3.61 0.00 7.55 1.81 3.58 1.15 1.06 8.66 31.19 3.25 4.64 8.47 14.69 1.39 3.19 2.13 0.00 0.00 1.32 9 I1_AR5 ActiveIntronRegion 0 8.85 1.73 13.37 4.66 5.99 0.67 11.09 5.42 2.98 1.83 7.29 9.21 9.49 2.03 6.67 10.83 10.72 1.22 3.10 3.04 2.24 0.62 6.90 10 I1_SR8 SilentIntronRegion 0 20.84 2.51 11.56 8.49 9.65 3.02 22.92 6.66 11.61 2.81 13.14 9.11 24.32 1.64 3.60 17.66 6.60 3.17 5.99 0.24 2.54 5.29 2.79 11 I1_AR9 ActiveIntronRegion 0 43.20 8.56 19.99 8.83 13.10 3.27 22.49 10.72 12.71 2.77 15.17 13.48 29.47 1.74 9.63 10.85 18.24 2.62 6.41 3.35 6.85 3.31 2.70 12 I1_SR9 SilentIntronRegion 0 15.34 3.96 8.18 3.76 7.28 1.96 9.73 5.89 5.64 2.33 8.75 4.14 6.14 2.51 7.54 7.23 7.07 2.91 4.81 2.17 3.65 2.64 4.29 13 E2_Aa NovelBoundary 0 7.56 5.92 24.45 12.95 29.29 8.35 24.82 9.41 12.73 4.00 2.68 0.00 6.82 2.35 6.30 19.82 0.00 8.83 0.00 0.00 8.34 12.00 0.00 14 ER2a ExonRegion 1 6.64 31.47 15.89 8.79 2.92 15.00 22.02 12.08 30.67 35.15 104.27 4.91 1.10 35.86 22.56 24.39 76.66 8.02 7.26 12.31 42.64 9.57 12.94 15 E2_Da NovelBoundary 0 0.00 0.00 14.40 4.89 0.00 0.00 5.96 6.41 6.48 0.00 5.21 0.00 0.00 2.24 0.00 4.10 9.35 1.91 4.80 0.00 0.00 0.00 0.00 16 E2a_E3a KnownJunction 0 0.00 19.21 17.71 24.87 33.87 40.20 82.76 34.83 62.50 51.98 44.06 16.66 0.00 12.24 10.38 19.31 25.90 30.43 13.65 5.43 7.97 14.21 22.37 17 E3_Aa NovelBoundary 0 6.59 0.00 15.17 5.29 16.55 0.00 12.76 3.33 6.86 1.48 5.16 0.00 12.34 0.00 4.57 8.63 8.98 0.00 0.00 2.81 2.84 0.00 0.00 18 ER3a ExonRegion 1 39.65 41.03 49.97 58.12 75.10 60.07 85.85 70.64 99.44 102.48 432.67 97.46 156.96 279.28 84.46 222.25 235.54 82.33 72.27 42.98 80.90 94.96 114.27 19 E3a_E4a KnownJunction 1 7.41 5.39 0.00 0.00 18.51 5.28 24.20 8.09 1.42 3.09 32.53 24.01 90.90 2.88 0.00 22.81 4.68 2.16 0.00 5.88 2.78 0.00 15.37 20 E3a_E4b KnownJunction 0 90.24 87.75 85.07 76.41 109.25 98.98 84.13 104.20 122.57 127.00 737.71 273.99 419.62 625.94 208.91 420.23 417.67 96.17 134.87 98.37 139.62 182.48 158.09 21 I3_AR1 ActiveIntronRegion 0 12.14 9.45 14.06 7.92 9.84 1.40 9.81 7.20 6.04 6.04 7.42 8.15 10.09 3.79 3.95 3.53 2.21 0.82 2.25 1.55 0.63 1.77 1.99 22 ER4a ExonRegion 0 17.46 19.83 20.52 21.12 37.46 20.63 33.10 32.84 38.60 33.83 177.34 71.44 127.80 133.58 42.79 111.45 91.60 29.10 30.26 28.19 31.95 41.15 61.67 23 ER4b ExonRegion 0 21.49 25.81 66.96 60.11 23.99 20.46 24.62 103.65 129.69 114.09 384.51 182.77 184.31 305.24 140.37 305.10 195.93 56.77 49.15 54.26 49.98 206.74 116.42 24 E4_Da NovelBoundary 0 14.08 6.38 47.31 27.14 35.99 13.63 30.96 22.06 28.85 8.46 21.95 12.60 34.25 24.25 5.19 7.60 0.00 0.00 8.75 12.98 0.00 7.16 7.43 25 E4a_E5a KnownJunction 1 23.41 18.35 61.85 53.84 8.66 2.21 4.81 115.25 129.60 131.60 887.07 57.92 67.85 78.58 31.77 84.76 427.58 41.25 21.55 61.81 76.23 96.81 63.34 26 I4 Intron 0 11.92 2.36 3.93 4.37 11.52 2.43 10.30 6.40 6.40 1.98 7.36 10.54 19.69 5.03 3.96 3.94 3.28 0.61 3.69 2.11 1.82 0.34 1.46 27 I4_AR1 ActiveIntronRegion 0 18.39 3.54 6.88 7.65 16.25 4.25 12.66 10.45 10.66 2.97 8.96 15.50 24.12 6.53 5.64 4.31 3.83 1.07 5.50 3.08 3.19 0.60 2.55 28 E5_Aa NovelBoundary 0 41.93 9.14 11.71 9.49 0.00 18.11 12.98 17.25 11.86 10.88 29.48 19.21 19.64 9.54 9.27 0.00 3.83 2.57 0.00 5.50 2.66 14.14 8.71 29 ER5a ExonRegion 0 82.08 85.00 47.45 44.80 82.20 45.18 67.17 68.90 66.18 62.62 158.44 101.07 91.44 96.76 63.60 83.01 80.07 18.22 23.45 22.12 31.32 71.20 36.10 30 IG12 Intergenic 0 33.90 83.80 32.70 36.28 45.09 29.17 48.85 44.01 27.64 43.81 8.73 18.90 18.22 10.92 10.70 7.23 11.47 13.22 12.68 26.82 2.75 8.16 6.77 31 IG12_AR3 ActiveIntergenicRegion 0 31.44 17.60 10.57 14.86 17.46 4.97 19.62 15.77 14.40 14.39 7.91 14.64 17.80 4.95 10.41 5.61 8.21 2.24 5.34 7.42 2.64 6.05 5.61 32 IG12_SR2 SilentIntergenicRegion 0 20.19 9.32 10.22 7.86 12.19 7.24 14.00 7.96 9.76 12.07 2.36 7.13 9.86 7.37 7.83 4.50 11.26 2.41 2.87 4.59 3.44 3.32 5.01 33 IG12_AR4 ActiveIntergenicRegion 0 47.40 94.07 41.81 43.85 76.09 42.83 55.75 39.81 17.84 42.94 5.70 12.40 9.21 7.72 11.56 4.11 8.04 5.30 14.57 33.18 0.75 3.41 4.19 34 IG12_SR3 SilentIntergenicRegion 0 40.59 103.44 52.77 63.61 64.29 42.43 56.85 60.90 31.99 53.53 7.91 13.57 11.28 14.91 10.60 9.50 13.92 20.21 19.14 38.34 3.10 7.19 10.13 35 IG12_AR5 ActiveIntergenicRegion 0 31.67 89.29 33.51 32.63 67.38 58.08 70.74 47.12 21.69 55.66 11.53 7.36 7.72 18.13 7.75 14.19 22.06 28.57 35.97 37.41 2.68 3.33 8.92 36 IG12_SR4 SilentIntergenicRegion 0 42.23 120.15 69.83 63.97 65.64 48.79 90.63 84.55 44.30 91.98 15.46 25.94 16.22 33.61 17.41 20.76 22.89 80.23 34.15 50.77 5.87 8.32 10.37 37 IG12_AR6 ActiveIntergenicRegion 0 35.73 271.88 75.92 79.91 97.03 77.96 122.94 119.83 72.93 119.98 15.14 45.69 37.43 21.04 12.15 8.87 15.70 29.51 22.57 71.41 2.88 20.98 8.76