Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CCDC41 Gene 0 41.46 41.87 37.12 33.03 39.24 37.34 61.15 19.34 14.99 25.66 96.31 110.54 91.75 66.67 49.47 54.95 69.78 13.50 15.67 28.22 14.49 30.55 27.24 2 397807 Transcript 0 2.75 1.93 0.47 1.13 2.07 0.47 6.17 0.00 0.94 0.00 8.05 3.83 6.66 4.84 5.35 13.40 5.87 3.96 3.28 4.93 1.65 2.92 5.75 3 397809 Transcript 0 0.61 0.00 0.00 0.94 0.57 0.30 1.27 0.00 0.00 0.01 0.06 0.00 0.18 0.52 0.36 0.04 1.05 1.64 1.04 1.36 0.96 0.00 1.12 4 339839 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 ER1a ExonRegion 0 3.02 6.15 6.76 2.87 4.04 7.73 14.01 5.67 5.78 7.73 33.80 5.06 3.62 28.79 16.05 20.56 32.59 16.75 5.00 16.37 13.01 3.53 14.60 6 E1_Da KnownBoundary 0 7.56 0.00 0.00 2.06 4.07 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.45 0.00 0.00 1.70 0.00 0.00 3.09 0.00 3.50 7 E1a_E2a KnownJunction 0 7.56 26.11 7.95 7.06 4.33 10.68 19.25 4.31 3.79 6.88 54.54 18.61 20.94 50.86 18.30 24.35 16.55 11.86 13.18 26.59 15.57 9.00 14.51 8 ER1b ExonRegion 0 1.22 0.00 0.00 1.87 1.14 0.60 2.53 0.00 0.00 0.03 0.12 0.00 0.35 1.04 0.73 0.07 2.10 3.28 2.07 2.71 1.93 0.00 2.24 9 E1b_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER2a ExonRegion 0 7.50 18.30 13.92 13.42 8.11 19.06 23.63 5.19 4.94 10.74 73.92 32.67 33.97 53.89 22.59 34.40 37.01 14.45 14.38 20.31 16.56 13.45 10.86 11 E2_Ab KnownBoundary 0 7.56 11.77 21.08 24.51 14.86 27.14 39.75 18.85 7.58 23.83 93.55 68.27 66.72 63.69 37.70 41.27 72.93 15.34 24.94 25.44 20.14 17.45 6.66 12 ER2b ExonRegion 1 12.19 14.50 23.06 17.29 22.04 26.35 47.92 10.94 13.28 28.86 140.77 76.87 121.98 83.15 28.47 64.97 119.48 16.26 13.59 25.11 27.29 38.21 21.68 13 E2a_E3a KnownJunction 1 24.23 15.85 33.14 20.58 28.86 39.64 48.49 15.44 14.03 31.67 137.25 122.44 168.66 95.65 19.41 107.07 94.72 14.59 7.81 35.03 27.80 78.32 52.24 14 ER3a ExonRegion 0 13.68 26.25 30.06 32.16 39.92 33.75 59.25 23.39 16.29 43.57 148.45 152.79 154.71 90.71 35.37 81.43 111.95 12.60 19.93 35.94 19.15 51.63 36.29 15 E3a_E4a KnownJunction 1 39.78 51.90 59.49 47.58 44.23 33.28 115.84 32.04 29.34 39.08 163.46 141.20 243.33 80.46 59.46 203.71 82.56 8.25 29.93 40.78 16.00 93.75 69.91 16 E4_Aa NovelBoundary 1 3.33 11.58 13.10 12.85 14.94 5.68 35.82 10.10 4.72 4.32 4.84 18.91 41.88 7.42 4.45 24.69 4.77 3.90 0.00 6.52 0.00 0.00 0.00 17 ER4a ExonRegion 0 24.01 26.55 36.47 34.69 29.38 45.73 78.11 24.22 18.71 32.68 107.68 206.84 177.77 88.51 32.57 82.26 78.37 9.50 7.74 31.37 6.56 44.40 40.89 18 E4_Da NovelBoundary 1 3.41 2.63 7.36 13.32 7.89 0.00 20.67 9.86 17.13 4.32 41.54 92.58 114.93 35.91 24.35 40.84 52.83 1.91 4.24 11.31 14.15 19.35 12.46 19 E4a_E5a KnownJunction 0 3.78 43.87 23.65 15.28 19.95 19.31 52.07 13.72 9.58 25.17 33.85 51.32 38.47 22.49 4.45 17.09 25.34 6.63 4.24 14.83 0.00 5.82 12.80 20 I4 Intron 0 6.76 3.79 2.92 4.43 6.54 2.15 18.60 4.25 3.72 3.55 28.50 57.36 65.53 35.61 13.66 18.82 26.53 1.18 2.20 5.09 2.35 11.08 6.41 21 I4_AR1 ActiveIntronRegion 0 1.74 0.00 0.00 0.00 4.40 0.00 6.53 0.00 0.00 0.00 17.46 25.35 44.25 22.55 15.44 12.22 16.24 1.49 0.00 0.00 3.59 0.00 0.00 22 I4_SR1 SilentIntronRegion 0 5.21 3.43 3.92 3.86 6.24 2.14 21.60 2.77 3.07 3.18 38.74 58.94 65.72 43.04 16.04 24.07 40.81 1.79 2.83 5.99 3.42 11.02 9.12 23 I4_AR2 ActiveIntronRegion 0 9.84 4.95 2.00 6.02 7.37 2.53 16.46 7.10 5.28 4.69 15.93 60.80 69.16 27.42 10.04 12.57 8.09 0.26 1.68 4.68 0.62 13.08 3.67 24 E5_Aa NovelBoundary 1 16.89 12.70 0.00 4.69 27.25 2.73 24.82 6.78 1.79 8.17 19.27 86.43 150.64 21.54 4.45 15.64 8.98 0.00 0.00 0.00 0.00 7.65 4.35 25 ER5a ExonRegion 0 35.08 48.25 34.12 27.57 37.78 40.84 63.06 16.37 14.08 29.95 77.93 132.38 124.64 73.43 31.45 44.45 53.24 7.32 11.63 24.95 4.37 30.10 19.67 26 E5a_E6a KnownJunction 0 43.34 93.14 32.79 20.78 67.74 71.83 59.27 20.29 17.42 15.61 81.23 119.74 143.50 93.77 53.53 36.32 63.49 4.02 9.51 20.71 10.75 17.21 31.67 27 ER6a ExonRegion 0 41.40 56.42 43.56 45.22 47.86 53.68 86.30 27.15 20.91 22.35 100.96 188.56 124.04 87.17 41.49 82.63 88.01 20.00 24.12 42.49 23.43 33.42 38.60 28 E6a_E7a KnownJunction 0 28.30 105.51 37.99 29.30 16.64 80.41 89.74 20.50 18.87 21.92 100.97 132.19 53.41 79.88 49.82 62.55 146.42 18.78 8.47 36.69 10.32 42.50 19.63 29 ER7a ExonRegion 0 51.18 68.74 31.69 32.70 42.59 51.43 77.99 22.74 22.11 30.04 131.92 108.07 140.88 119.29 48.29 77.46 105.75 22.79 12.91 43.87 14.74 40.63 48.50 30 E7a_E8a KnownJunction 0 95.28 46.11 37.40 52.47 44.40 50.65 88.15 27.89 15.13 43.17 120.87 156.95 145.45 111.48 44.75 71.43 125.76 12.93 14.02 37.58 5.99 33.56 46.18 31 ER8a ExonRegion 0 60.48 42.71 32.66 34.31 52.54 49.83 79.08 18.16 13.47 33.98 124.29 137.56 171.37 91.43 55.48 59.13 108.44 12.53 13.38 41.81 9.72 29.02 31.95 32 E8_Da NovelBoundary 0 10.30 15.33 6.21 14.75 4.33 15.90 15.59 2.55 13.77 16.68 22.22 25.21 26.46 17.36 10.26 8.37 26.09 2.57 0.00 8.05 2.66 5.14 4.01 33 E8a_E9a KnownJunction 0 46.45 53.48 32.70 37.62 64.09 47.08 88.86 23.95 39.06 38.71 135.51 196.11 198.69 77.29 61.31 71.35 90.14 15.17 8.66 8.76 11.80 53.58 36.02 34 I8 Intron 0 7.49 10.22 14.09 9.63 11.40 11.64 24.90 4.14 5.84 13.46 11.57 17.18 20.82 10.54 13.08 10.27 9.82 1.89 3.84 8.72 1.33 5.36 3.19 35 I8_AR1 ActiveIntronRegion 0 8.51 11.11 16.16 10.09 12.89 13.39 26.76 4.76 6.44 15.15 12.86 19.57 23.89 12.18 15.25 11.84 10.83 1.96 4.23 9.36 1.57 6.11 3.76 36 E9_Aa NovelBoundary 0 0.00 9.41 8.66 6.69 4.16 8.92 49.37 1.68 4.46 7.31 13.16 0.00 0.00 0.00 5.93 7.95 0.00 3.90 3.86 0.00 0.00 5.51 3.50 37 ER9a ExonRegion 0 37.92 27.17 30.19 38.75 47.55 38.72 74.13 16.50 17.14 29.21 145.66 181.45 205.46 93.13 52.90 62.66 106.29 12.08 17.93 37.89 10.21 31.73 28.96 38 E9a_E10a KnownJunction 0 45.79 39.86 38.02 32.63 49.92 82.91 106.61 14.79 24.07 28.21 156.78 153.20 133.92 93.30 97.29 61.35 105.38 12.52 30.78 46.60 20.63 58.17 33.04 39 ER10a ExonRegion 0 40.03 45.61 38.75 38.96 43.60 46.86 93.53 15.27 12.02 23.43 130.23 153.32 133.92 83.95 64.10 60.02 82.39 16.22 19.86 28.96 19.00 35.10 38.35 40 E10_Da NovelBoundary 0 3.56 8.75 3.28 1.30 11.88 0.00 14.22 0.00 14.38 8.41 17.37 17.41 26.62 6.95 10.01 11.96 7.57 0.00 4.80 11.44 0.00 3.12 0.00 41 E10a_E11a KnownJunction 0 37.78 55.91 35.60 29.17 19.19 18.40 80.38 13.47 6.42 23.88 81.13 113.29 46.75 78.11 54.27 36.66 39.55 16.79 23.62 31.32 13.96 31.72 38.93 42 I10 Intron 0 6.40 8.20 8.39 7.71 8.45 7.07 17.34 6.43 5.49 8.90 5.22 11.79 15.83 4.87 4.87 9.15 8.00 2.47 3.48 5.29 1.67 3.66 3.54 43 I10_AR1 ActiveIntronRegion 0 3.75 3.95 1.77 3.61 10.59 6.68 17.69 2.54 4.88 8.58 1.60 9.73 14.31 3.29 1.62 4.94 5.04 0.00 1.81 1.18 1.24 0.09 1.75 44 I10_SR2 SilentIntronRegion 0 11.16 9.67 7.70 10.47 11.36 7.53 19.29 7.52 5.14 12.28 6.23 13.39 13.55 6.67 6.04 15.68 9.55 2.13 4.61 6.09 2.43 4.99 5.81 45 I10_AR3 ActiveIntronRegion 0 10.38 12.57 14.98 10.71 7.50 6.12 16.98 10.36 6.34 9.70 6.52 14.70 16.38 3.99 8.92 7.57 14.49 6.63 4.91 4.96 2.40 2.56 3.75 46 I10_SR4 SilentIntronRegion 0 10.62 9.69 19.91 10.36 11.68 11.59 23.29 14.10 8.57 14.25 7.21 15.75 29.01 5.19 4.55 14.71 9.76 3.17 6.85 9.51 1.72 6.73 6.51 47 I10_AR5 ActiveIntronRegion 0 4.37 8.09 6.60 10.85 9.43 8.73 20.13 5.72 7.48 9.72 4.93 19.88 20.36 7.41 5.50 8.85 9.61 1.57 4.51 6.08 2.51 3.89 4.72 48 I10_SR5 SilentIntronRegion 0 5.28 8.75 7.46 8.70 7.99 8.21 16.11 5.69 5.59 9.17 7.42 10.63 9.17 7.61 6.22 10.72 10.98 4.41 3.28 7.17 2.28 4.91 2.68 49 I10_AR6 ActiveIntronRegion 0 11.75 8.63 6.52 8.79 9.59 10.91 17.65 4.78 5.64 6.05 7.48 7.50 11.33 2.89 9.51 8.02 4.85 1.29 1.83 1.51 0.00 4.20 4.09 50 E11_Aa NovelBoundary 0 15.93 8.68 12.33 14.18 33.96 14.03 26.06 9.16 5.90 12.71 11.79 17.56 26.30 4.53 4.45 11.71 3.55 0.00 3.48 6.07 2.59 3.12 0.00 51 ER11a ExonRegion 0 61.88 49.31 33.52 39.69 47.53 39.02 75.22 20.45 13.26 25.67 114.32 144.18 73.62 75.31 56.35 59.48 73.88 16.34 19.70 25.76 24.44 32.62 39.95 52 E11a_E12a KnownJunction 0 62.46 62.75 47.07 55.20 72.16 74.28 76.22 20.87 23.84 37.50 120.24 85.98 147.39 66.69 48.33 72.97 55.07 20.52 18.35 27.36 24.22 43.84 39.78 53 ER12a ExonRegion 0 62.24 53.80 58.02 58.60 62.63 47.98 69.06 30.00 12.98 40.74 109.47 119.09 78.84 74.26 63.15 79.80 88.41 25.12 18.83 28.78 20.92 35.01 50.48 54 E12a_E13a KnownJunction 0 64.68 82.95 81.46 57.14 41.94 23.79 70.22 30.64 19.50 35.03 99.55 78.33 54.22 85.47 78.50 50.16 79.66 23.71 13.27 32.02 13.90 36.74 40.04 55 ER13a ExonRegion 0 88.13 91.92 68.52 61.11 52.98 40.61 78.14 27.16 15.86 34.54 99.54 104.41 76.70 72.67 73.25 68.88 85.39 17.44 17.50 30.29 14.80 39.22 36.23 56 E13_Da NovelBoundary 0 3.78 0.00 4.61 6.13 0.00 5.79 10.82 2.55 0.00 1.21 2.47 17.86 0.00 4.89 9.15 11.88 8.70 3.86 0.00 3.13 2.97 5.76 11.87 57 E13a_E14a KnownJunction 0 0.00 0.00 0.00 1.33 0.00 0.00 3.53 0.00 0.00 0.00 5.37 5.55 6.49 2.47 4.45 11.36 0.00 2.11 0.00 0.00 0.00 3.00 8.62 58 E13a_E15a KnownJunction 0 110.02 133.27 55.29 47.68 45.67 54.40 93.45 18.40 17.85 34.54 85.71 118.99 85.55 52.21 53.65 52.46 72.65 3.65 31.44 23.65 5.68 21.98 15.02 59 ER14a ExonRegion 0 5.49 3.86 0.94 0.92 4.14 0.94 8.81 0.00 1.88 0.00 10.74 2.10 6.82 7.20 6.24 15.43 11.74 5.80 6.56 9.86 3.29 2.84 2.88 60 E15_Aa NovelBoundary 0 23.49 24.07 7.54 6.83 4.07 7.04 16.56 0.00 0.00 0.00 6.74 25.21 20.29 2.41 6.18 3.76 4.77 0.00 0.00 0.00 2.97 0.00 0.00 61 ER15a ExonRegion 0 80.33 96.81 68.15 63.06 66.84 45.65 87.00 26.53 28.35 29.69 106.22 138.83 95.92 62.23 74.74 76.90 61.35 16.20 20.21 43.31 12.37 49.12 36.06 62 E15a_E16a KnownJunction 0 80.01 82.55 82.55 91.16 85.14 60.42 94.91 29.86 39.15 41.26 148.62 149.00 133.11 96.89 89.99 66.91 108.74 14.92 33.51 47.36 5.56 50.89 26.80 63 ER16a ExonRegion 0 115.83 94.25 69.64 65.25 67.67 79.71 108.04 31.11 26.78 32.95 152.04 156.59 89.68 84.17 99.47 81.83 87.39 15.58 31.50 42.36 19.94 45.19 35.15 64 E16a_E17a KnownJunction 1 110.32 138.59 90.36 55.07 50.42 57.58 130.54 42.10 26.68 37.31 186.68 167.90 55.19 122.37 120.90 55.88 87.98 10.20 13.74 50.75 20.76 31.96 37.30 65 ER17a ExonRegion 0 51.53 45.80 51.58 35.39 51.07 39.98 60.56 25.87 17.19 28.67 80.38 116.33 68.67 51.74 73.89 39.98 42.43 5.02 16.90 21.63 9.08 33.29 17.41 66 IG21 Intergenic 0 2.92 5.26 3.93 5.77 8.76 7.27 16.43 3.78 3.81 8.39 9.17 14.36 20.56 7.10 9.51 8.71 9.67 2.46 1.65 8.80 0.38 3.77 7.08 67 IG21_AR2 ActiveIntergenicRegion 0 2.99 5.39 4.04 5.92 8.99 7.46 16.85 3.88 3.90 8.61 9.41 14.74 21.09 7.28 9.75 8.92 9.92 2.52 1.69 9.02 0.39 3.87 7.25