Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RASSF3 Gene 0 35.28 8.69 10.17 14.80 46.64 21.89 59.59 23.58 22.04 11.41 132.86 143.06 126.91 206.33 71.33 128.32 108.52 17.94 24.54 20.37 95.20 41.56 40.44 2 283172 Transcript 0 0.00 0.00 1.69 0.00 0.00 0.00 2.16 0.00 0.00 0.00 6.90 5.85 0.00 7.95 10.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.28 3 336061 Transcript 0 17.05 9.05 8.38 18.50 59.77 43.26 56.38 26.27 24.59 16.09 174.80 189.21 217.93 243.40 75.42 141.94 125.25 21.42 14.82 21.10 109.76 55.19 31.87 4 ER1a ExonRegion 0 2.94 1.58 1.89 1.42 5.20 1.68 3.38 2.84 5.76 3.99 35.34 6.30 12.77 51.82 22.56 45.98 43.13 4.95 12.00 4.60 27.55 9.36 23.15 5 E1_Da NovelBoundary 0 0.00 2.63 1.60 1.66 0.00 0.00 1.81 0.00 0.00 0.00 0.00 6.30 0.00 0.00 0.00 0.00 4.49 0.00 0.00 2.75 3.03 2.82 17.41 6 E1a_E2a KnownJunction 1 21.93 3.09 7.86 6.76 8.66 10.68 11.97 12.65 24.54 5.86 73.28 0.00 65.42 124.26 25.71 111.51 96.96 23.42 41.04 24.67 56.03 20.15 54.46 7 I1 Intron 1 24.31 1.65 3.29 4.17 16.43 1.51 19.16 6.49 3.29 1.62 2.63 11.99 22.54 2.90 14.64 14.34 11.50 2.00 3.00 3.82 4.85 1.75 8.30 8 I1_SR2 SilentIntronRegion 0 5.97 3.53 4.03 2.33 9.33 1.04 15.17 5.23 5.97 3.36 1.99 0.18 2.48 1.62 11.61 22.54 21.78 7.21 2.79 4.55 11.20 0.17 4.16 9 I1_SR3 SilentIntronRegion 1 34.10 1.94 3.57 5.39 20.04 1.78 24.16 8.56 4.77 2.00 2.81 16.99 31.99 3.29 17.88 17.01 13.29 2.34 4.20 5.09 4.99 1.93 10.98 10 I1_AR2 ActiveIntronRegion 0 18.58 1.13 6.61 5.97 15.08 2.34 21.83 7.64 2.62 3.00 5.67 13.88 39.51 4.70 18.70 13.48 13.81 2.47 2.34 4.23 3.71 2.68 8.01 11 I1_SR4 SilentIntronRegion 0 16.81 1.70 2.32 3.07 16.19 1.24 15.95 3.97 1.49 0.55 1.88 6.88 9.51 2.02 10.87 10.35 7.13 1.09 1.55 2.01 3.57 1.58 4.99 12 I1 Intron 0 25.78 1.46 3.49 4.32 13.45 1.05 17.02 5.97 2.75 1.40 1.83 10.36 13.90 2.60 11.45 11.35 9.22 1.85 2.17 2.87 5.30 1.55 6.82 13 I1_SR1 SilentIntronRegion 1 56.69 3.02 6.88 7.74 34.23 1.52 27.50 11.53 4.08 2.84 4.16 14.22 26.45 3.61 24.60 16.91 13.61 1.93 3.21 3.74 5.82 3.91 10.87 14 I1_SR2 SilentIntronRegion 1 62.61 2.42 8.59 9.29 23.42 2.46 23.33 11.45 4.47 2.66 3.20 8.85 19.87 4.44 22.00 19.98 14.00 2.78 4.59 5.33 9.57 2.04 12.47 15 I1_AR2 ActiveIntronRegion 1 41.62 1.68 7.23 7.33 19.44 1.34 16.50 8.19 2.52 3.37 1.65 9.27 15.00 3.61 16.48 14.00 12.02 1.78 2.60 3.74 6.57 4.67 11.65 16 I1_SR3 SilentIntronRegion 0 24.09 1.32 5.22 4.60 16.08 0.85 21.57 6.07 2.65 1.59 1.83 7.92 14.95 2.48 13.46 12.00 10.19 2.82 3.59 2.49 4.14 1.63 8.61 17 I1_AR3 ActiveIntronRegion 0 36.35 1.60 5.66 4.44 19.36 3.00 35.22 4.71 2.19 1.22 1.58 9.83 24.68 4.37 14.29 8.36 11.57 1.85 0.00 1.97 7.03 0.01 4.83 18 I1_SR4 SilentIntronRegion 0 16.93 0.96 3.43 3.26 10.05 1.27 15.43 4.28 2.02 0.96 1.48 7.54 12.60 2.34 9.11 9.57 9.36 0.95 2.21 3.19 2.63 1.54 6.68 19 I1_AR5 ActiveIntronRegion 1 19.73 2.42 4.25 7.49 13.27 1.37 21.71 7.87 3.74 2.15 2.20 31.74 22.69 1.70 12.25 7.56 9.90 0.52 0.30 5.41 1.66 0.78 6.13 20 I1_AR6 ActiveIntronRegion 0 13.54 0.27 0.00 7.34 13.54 0.00 15.73 8.74 3.71 1.10 0.57 20.95 9.52 2.51 11.95 14.73 10.05 0.00 1.26 5.98 1.33 0.00 7.99 21 I1_AR7 ActiveIntronRegion 1 16.93 0.00 0.00 8.18 6.15 0.00 10.33 8.64 3.58 0.00 0.00 21.65 23.45 4.87 25.53 8.92 6.60 0.00 6.37 5.11 1.98 0.00 11.75 22 I1_AR8 ActiveIntronRegion 1 11.07 0.00 0.00 8.18 7.62 0.00 15.58 8.64 2.47 0.00 0.30 22.31 23.45 2.87 21.65 9.14 12.19 0.57 6.37 7.04 0.17 0.00 9.71 23 I1_SR5 SilentIntronRegion 0 2.82 4.07 0.00 2.04 2.68 0.00 21.18 5.19 3.71 0.00 4.51 13.71 4.69 7.04 3.87 18.33 13.20 1.85 0.00 10.99 2.20 0.00 11.26 24 I1_AR10 ActiveIntronRegion 0 4.23 4.07 0.00 1.36 2.68 0.00 24.78 5.19 3.71 0.00 5.80 12.37 4.69 8.12 5.80 23.78 13.20 2.64 2.73 12.77 2.20 0.00 11.75 25 I1_SR6 SilentIntronRegion 0 19.28 1.58 2.53 2.18 12.10 2.09 15.11 4.82 1.90 0.93 1.40 8.81 16.36 2.12 10.60 9.00 6.90 0.37 2.02 2.69 2.67 1.03 4.16 26 I1_AR11 ActiveIntronRegion 1 23.87 0.00 9.80 1.06 15.16 0.00 12.58 8.83 9.47 4.59 2.15 26.94 26.32 4.24 25.79 10.40 14.12 2.77 6.19 1.18 2.57 4.17 2.94 27 I1_AR12 ActiveIntronRegion 1 37.90 2.50 10.03 2.76 18.85 0.00 22.15 9.51 9.04 2.71 1.32 54.91 13.75 5.61 15.76 11.35 11.78 2.94 5.43 3.00 2.20 2.94 1.40 28 I1_AR13 ActiveIntronRegion 1 58.25 6.81 6.82 5.75 22.80 0.00 29.93 10.90 7.20 0.70 4.03 37.27 24.67 2.61 14.38 14.09 9.90 1.85 3.19 5.46 1.82 5.53 8.68 29 I1_AR14 ActiveIntronRegion 0 49.64 4.16 5.87 4.71 21.93 0.00 29.87 10.41 3.53 1.17 1.25 18.83 30.33 3.00 11.97 8.99 12.77 2.25 2.61 2.32 2.50 2.94 6.59 30 I1_SR7 SilentIntronRegion 1 27.22 1.52 5.76 5.71 20.11 1.66 16.89 9.38 4.74 1.46 1.14 10.57 18.94 2.96 14.30 15.89 9.84 2.67 3.15 4.76 7.20 1.43 7.42 31 I1_AR16 ActiveIntronRegion 1 24.21 1.08 4.24 3.97 13.96 0.10 12.15 6.46 3.66 1.84 2.74 5.46 9.28 2.26 15.52 20.19 19.04 3.43 2.00 6.67 6.31 0.13 12.43 32 I1_SR8 SilentIntronRegion 0 18.37 0.69 2.55 3.80 10.28 1.11 16.07 4.37 2.04 0.90 1.30 8.34 12.87 2.51 9.82 10.71 8.48 2.01 2.36 2.52 4.81 1.04 5.31 33 I1_AR17 ActiveIntronRegion 0 31.50 1.01 4.25 4.59 7.79 0.00 18.58 4.68 2.77 0.35 1.47 18.96 22.96 2.13 10.39 9.87 4.55 1.52 2.63 1.09 3.47 0.42 4.34 34 I1_SR9 SilentIntronRegion 0 14.56 1.48 1.28 2.74 8.99 0.48 14.04 4.18 2.19 1.39 1.29 15.66 16.04 2.23 7.11 6.30 7.38 0.46 1.30 2.66 3.20 1.52 4.74 35 I1_AR18 ActiveIntronRegion 1 18.24 0.85 3.96 3.32 5.61 0.00 10.37 3.21 2.88 0.78 0.00 46.89 3.52 0.93 7.05 3.61 6.22 0.00 1.45 3.91 0.75 1.86 5.11 36 I1_AR19 ActiveIntronRegion 0 12.98 1.04 1.92 2.52 5.75 0.00 15.78 2.57 3.01 1.26 1.49 15.46 8.87 2.54 5.76 7.56 8.62 1.57 2.08 3.31 2.87 1.03 3.66 37 I1_AR20 ActiveIntronRegion 0 18.31 1.91 1.50 3.66 6.07 0.00 10.21 8.09 4.09 0.94 0.93 6.98 4.80 1.02 6.54 9.69 6.69 2.37 0.61 1.19 6.80 0.60 8.46 38 I1_SR11 SilentIntronRegion 0 17.04 1.27 1.72 2.92 7.71 0.63 12.62 4.80 2.65 1.15 1.22 8.72 8.57 2.30 7.60 10.22 7.52 2.31 1.63 2.06 6.71 1.28 5.79 39 I1_AR21 ActiveIntronRegion 0 16.38 4.07 3.48 1.51 8.03 3.67 12.47 1.73 1.30 0.00 4.48 1.82 8.89 1.88 7.02 1.88 5.73 1.85 0.00 0.00 4.06 0.00 5.26 40 I1_AR22 ActiveIntronRegion 0 13.30 1.82 3.51 2.02 6.21 1.77 11.93 2.92 5.75 0.00 4.94 10.89 10.64 1.91 8.31 10.94 7.68 1.80 0.56 3.36 8.19 1.46 5.29 41 I1_SR12 SilentIntronRegion 0 18.76 0.91 1.95 2.46 8.88 0.88 13.07 3.33 1.50 0.77 1.14 7.09 6.53 1.40 4.33 6.27 5.57 1.21 0.63 1.32 4.21 0.64 4.13 42 E2_Aa NovelBoundary 0 72.98 2.76 2.51 2.06 0.00 2.90 4.06 8.30 4.60 1.45 0.00 7.65 0.00 2.47 0.00 0.00 8.79 0.00 4.80 3.26 0.00 0.00 4.35 43 ER2a ExonRegion 0 11.86 7.32 8.11 12.11 38.53 29.68 62.99 15.99 22.01 14.11 161.45 151.65 163.37 160.19 44.86 77.61 140.29 26.71 14.25 25.75 73.66 34.94 34.99 44 E2_Da NovelBoundary 0 21.34 0.00 1.27 1.27 20.37 10.79 5.92 1.73 6.83 3.20 0.00 12.30 6.82 2.47 4.45 7.78 7.95 1.62 0.00 3.20 0.00 0.00 0.00 45 E2a_E3a KnownJunction 0 15.85 9.21 3.99 22.08 69.61 56.22 54.89 29.37 26.45 17.19 208.74 182.46 203.07 248.93 84.18 150.22 119.03 22.97 4.80 23.84 96.81 59.46 24.16 46 E2a_E4a KnownJunction 0 0.00 0.00 1.69 0.00 0.00 0.00 2.16 0.00 0.00 0.00 6.90 5.85 0.00 7.95 10.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.28 47 I2 Intron 0 14.48 0.37 1.41 1.89 5.59 1.09 8.65 2.86 1.14 0.79 1.75 4.69 8.35 3.04 4.01 6.37 4.69 1.31 0.49 2.09 3.75 1.34 2.65 48 I2_SR1 SilentIntronRegion 0 14.49 0.37 1.42 1.89 5.60 1.09 8.65 2.86 1.14 0.79 1.75 4.70 8.36 3.04 4.02 6.37 4.69 1.31 0.49 2.09 3.76 1.35 2.65 49 ER3a ExonRegion 0 21.21 7.95 11.58 16.99 37.80 21.08 46.36 26.15 25.66 16.41 178.53 222.68 185.63 251.53 70.02 154.28 165.64 24.95 26.38 25.00 126.96 51.79 39.18 50 E3a_E4a KnownJunction 1 14.08 10.00 9.58 16.45 71.90 52.47 67.88 23.29 21.67 14.67 137.14 162.50 265.08 229.74 72.07 121.34 91.07 16.33 13.27 14.45 105.52 54.31 32.27 51 ER4a ExonRegion 0 35.40 11.72 11.63 17.63 52.64 36.64 74.39 32.81 27.76 14.51 143.46 214.66 163.21 227.51 86.17 143.80 126.84 16.98 26.47 22.80 136.17 38.32 39.32 52 E4a_E5a KnownJunction 0 79.42 17.63 17.36 20.21 30.56 23.91 93.76 22.02 41.09 20.20 182.89 173.91 125.80 273.00 110.14 213.19 151.66 23.05 50.92 21.22 178.60 39.80 57.11 53 ER5a ExonRegion 0 55.79 11.20 12.69 18.71 64.93 25.58 81.34 29.72 25.55 11.24 144.24 148.97 133.77 248.77 91.04 153.88 102.47 18.70 29.72 22.98 104.27 50.91 48.15 54 IG3_SR1 SilentIntergenicRegion 0 20.86 2.98 2.93 13.00 40.53 14.27 39.69 18.84 11.63 5.12 62.14 132.63 146.76 127.55 55.05 53.86 53.94 3.88 15.38 4.72 34.61 19.62 18.62 55 IG3_AR1 ActiveIntergenicRegion 0 95.66 9.79 30.75 30.07 84.89 30.41 99.04 51.68 35.44 25.64 199.73 212.30 197.47 320.64 156.78 199.78 161.78 21.53 62.38 23.88 153.20 80.55 60.08 56 IG3_SR2 SilentIntergenicRegion 0 21.13 4.42 24.46 33.03 33.05 6.25 38.11 48.37 33.36 19.33 143.15 97.09 121.83 212.61 140.04 166.32 114.83 13.71 43.73 20.27 81.66 74.94 42.32 57 IG3_AR2 ActiveIntergenicRegion 0 227.78 21.29 29.37 42.59 171.21 29.63 124.80 44.92 23.23 20.01 104.85 211.82 160.26 131.30 172.39 70.16 67.57 3.49 17.24 18.33 31.10 54.04 26.59