Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SILV Gene 0 8.86 23.62 151.14 43.58 22.89 15.43 32.52 18.78 21.38 46.18 0.77 1.10 0.96 2.31 2.18 6.88 1.85 306.15 21.37 20.99 1.90 3.55 16.06 2 360714 Transcript 0 1.21 0.00 1.11 0.00 0.85 0.89 1.01 0.41 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.44 0.00 0.00 0.93 3 449260 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 ER2a ExonRegion 0 3.63 0.00 3.33 0.00 2.55 0.00 3.03 1.23 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 1.32 0.00 0.00 2.80 7 ER2b ExonRegion 0 13.54 52.09 104.67 51.07 56.01 27.09 67.01 21.25 21.68 39.78 0.00 0.00 0.00 1.35 0.00 11.44 0.00 281.08 45.98 25.99 1.06 4.01 34.41 8 E2_Da NovelBoundary 0 32.97 6.05 3.61 0.00 16.30 0.00 8.30 2.38 2.60 1.13 2.16 0.00 0.00 0.00 0.00 0.00 0.00 5.76 0.00 0.00 5.50 0.00 0.00 9 E2a_E3a KnownJunction 0 0.00 2.76 25.10 15.72 0.00 5.17 1.68 9.08 6.92 10.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.59 0.00 3.20 0.00 0.00 8.02 10 ER3a ExonRegion 0 0.55 3.44 107.98 35.58 2.53 4.10 6.91 21.92 16.90 41.55 0.00 0.00 0.00 0.56 0.00 4.58 0.00 219.28 17.68 23.83 2.03 3.77 20.08 11 E3a_E4a KnownJunction 0 3.70 8.02 150.53 87.17 0.00 8.69 5.92 26.21 26.45 55.01 0.00 0.00 0.00 0.00 0.00 26.66 0.00 623.21 80.76 29.79 0.00 6.06 44.30 12 I3_SR1 SilentIntronRegion 0 4.73 0.91 3.60 1.58 19.58 2.64 12.21 2.30 0.00 0.69 0.86 0.00 0.00 0.00 0.00 0.00 0.00 4.89 0.00 0.00 0.99 1.26 3.94 13 ER4a ExonRegion 0 3.99 11.21 113.18 41.01 35.75 22.35 44.59 20.14 20.81 37.85 1.55 1.15 0.00 1.62 0.00 8.47 0.00 414.35 19.85 18.43 3.06 4.42 21.14 14 E4a_E5a KnownJunction 0 0.00 33.61 150.62 46.11 14.43 34.92 68.89 13.27 21.79 38.55 2.47 0.00 0.00 4.83 0.00 4.36 0.00 271.64 3.67 16.75 0.00 0.00 19.46 15 ER5a ExonRegion 0 6.15 35.99 133.70 34.18 21.25 22.28 24.90 22.24 18.94 40.86 1.03 0.10 0.00 1.11 0.75 8.34 0.00 301.28 13.78 15.07 2.50 1.81 13.81 16 E5_Da NovelBoundary 0 3.78 3.29 21.76 24.94 20.54 5.79 8.39 4.89 12.47 13.97 2.68 0.00 0.00 0.00 0.00 7.95 0.00 68.07 13.37 2.56 5.56 2.94 4.10 17 E5a_E6a KnownJunction 0 6.67 36.11 151.03 17.41 31.07 11.58 14.57 20.04 16.70 38.52 5.05 0.00 0.00 2.47 4.70 0.00 0.00 311.81 13.27 31.45 0.00 5.33 22.96 18 I5 Intron 0 4.17 2.41 23.04 16.02 19.00 5.54 13.92 7.11 7.02 8.54 0.51 0.47 0.51 0.50 1.17 5.47 1.74 50.49 10.87 5.59 1.74 0.82 1.93 19 I5_AR1 ActiveIntronRegion 0 4.19 2.42 23.16 16.10 19.10 5.57 13.99 7.15 7.05 8.58 0.51 0.47 0.51 0.50 1.17 5.50 1.74 50.75 10.93 5.62 1.75 0.83 1.94 20 E6_Aa NovelBoundary 0 7.33 8.81 20.49 16.98 16.64 10.22 20.58 3.61 1.24 5.16 2.37 0.00 0.00 0.00 0.00 0.00 4.77 52.98 9.32 3.26 0.00 0.00 4.18 21 ER6a ExonRegion 0 3.28 19.14 161.44 37.73 21.31 16.61 25.11 21.62 21.80 43.91 1.99 1.12 1.16 1.78 3.30 7.71 1.51 378.41 29.38 24.30 3.47 1.38 13.11 22 E6a_E7a KnownJunction 0 3.78 20.39 139.94 27.00 26.32 18.17 43.32 17.99 21.70 48.62 0.00 0.00 0.00 2.12 9.39 7.69 4.77 367.15 12.42 22.31 0.00 3.12 16.90 23 E7_Aa NovelBoundary 0 10.37 6.31 14.67 17.68 7.39 5.45 2.21 9.04 4.60 7.49 0.00 0.00 0.00 2.24 0.00 0.00 0.00 50.70 0.00 0.00 3.15 2.94 8.37 24 ER7a ExonRegion 0 6.19 24.05 166.81 42.55 20.65 16.58 34.68 18.26 24.47 55.15 0.97 2.07 0.83 3.19 1.73 7.11 1.99 384.79 25.52 24.51 2.33 4.41 16.63 25 E7_Da NovelBoundary 0 0.00 0.00 23.36 21.91 24.53 15.39 18.68 5.83 8.91 3.55 0.00 0.00 0.00 2.77 0.00 0.00 0.00 63.22 0.00 14.70 0.00 0.00 0.00 26 E7a_E8a KnownJunction 0 6.37 10.06 160.37 39.49 19.86 13.17 37.49 17.17 16.44 43.01 0.00 0.00 0.00 0.00 4.45 3.25 0.00 386.72 13.08 29.79 0.00 5.51 25.95 27 I7 Intron 0 7.13 6.67 31.42 24.14 18.51 4.88 14.21 10.28 5.55 9.25 0.34 0.63 0.42 1.78 0.18 2.37 0.59 54.68 5.65 3.96 1.17 0.74 4.17 28 I7_SR1 SilentIntronRegion 0 6.84 6.88 32.71 26.19 18.44 3.91 16.54 13.55 6.22 9.82 0.24 0.89 0.59 1.66 0.00 1.86 0.00 62.40 7.11 4.73 1.66 0.78 4.35 29 I7_AR1 ActiveIntronRegion 0 7.97 6.30 28.82 19.50 19.02 7.37 8.71 2.42 3.98 7.99 0.60 0.00 0.00 2.12 0.63 3.67 2.04 36.62 2.16 2.15 0.00 0.64 3.79 30 E8_Aa NovelBoundary 0 10.67 14.67 52.07 43.85 39.64 27.94 33.34 6.33 11.60 30.92 0.00 5.25 0.00 0.00 4.45 0.00 4.77 111.59 4.61 3.00 0.00 0.00 4.35 31 ER8a ExonRegion 0 8.21 31.69 186.97 57.00 39.22 12.07 36.66 16.10 18.79 43.31 1.60 3.11 1.68 4.84 2.26 4.19 1.44 347.06 33.38 20.04 0.00 4.17 14.06 32 E8a_E9a KnownJunction 0 17.78 57.62 198.78 49.84 38.46 7.89 28.57 21.32 24.74 39.94 0.00 0.00 0.00 7.12 0.00 4.27 0.00 251.87 4.80 14.25 0.00 0.00 4.27 33 I8_AR1 ActiveIntronRegion 0 30.34 1.69 20.01 11.81 24.08 9.17 14.56 12.10 7.20 3.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.48 0.00 2.13 1.84 2.08 0.00 34 I8_SR2 SilentIntronRegion 0 10.49 1.23 17.38 11.13 10.42 8.01 12.25 5.43 3.46 2.92 1.17 0.00 0.00 0.35 0.00 0.00 0.00 39.98 1.93 0.68 2.68 0.78 0.00 35 E9_Aa NovelBoundary 0 2.89 5.79 25.46 13.82 22.84 5.05 17.18 14.58 6.48 3.84 2.32 0.00 0.00 0.00 0.00 0.00 0.00 64.34 0.00 3.13 0.00 3.12 4.35 36 ER9a ExonRegion 0 13.74 36.80 180.17 47.99 26.73 13.14 37.01 17.18 20.65 46.73 0.00 0.00 0.00 2.94 4.10 8.25 2.95 210.40 7.94 17.45 1.32 3.38 13.27 37 E9_Da NovelBoundary 0 13.19 0.00 11.00 2.06 11.38 0.00 10.02 6.94 9.69 0.00 2.37 0.00 0.00 0.00 0.00 0.00 4.02 16.37 0.00 3.26 3.15 0.00 0.00 38 E9a_E10a KnownJunction 0 6.30 20.92 194.02 64.66 19.78 8.69 25.79 24.11 16.06 49.37 0.00 0.00 0.00 7.00 8.90 0.00 8.23 235.87 8.56 12.40 0.00 2.33 3.67 39 E10_Aa NovelBoundary 0 3.78 0.00 4.73 0.00 0.00 11.58 8.13 5.09 5.01 0.00 5.21 0.00 0.00 0.00 0.00 0.00 4.77 10.86 0.00 0.00 0.00 0.00 11.52 40 ER10a ExonRegion 0 11.63 25.81 205.08 55.61 16.79 17.12 35.54 20.49 22.30 55.20 0.48 0.88 0.00 2.05 4.79 8.01 2.76 233.02 16.82 18.04 2.17 3.78 15.10 41 E10_Da NovelBoundary 0 16.74 0.00 1.39 0.00 4.33 7.67 2.08 2.01 1.79 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 3.07 5.19 0.00 0.00 42 E10a_E11a KnownJunction 0 0.00 20.98 231.57 57.57 35.74 13.91 49.82 25.75 40.91 57.54 0.00 0.00 0.00 0.00 4.45 3.67 3.55 283.00 15.81 26.65 0.00 2.51 11.95 43 E11_Aa NovelBoundary 0 18.60 0.00 26.58 3.26 0.00 0.00 6.58 6.08 4.98 5.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.63 0.00 0.00 2.47 0.00 0.00 44 ER11a ExonRegion 0 24.51 23.04 178.11 56.02 22.26 12.77 40.91 19.76 29.66 60.10 0.00 0.00 2.72 2.38 4.45 3.48 2.74 249.99 8.22 30.10 0.00 3.08 19.46 45 E11_Da NovelBoundary 0 29.12 0.00 1.83 1.40 0.00 2.90 10.55 10.76 2.81 2.74 0.00 0.00 0.00 0.00 0.00 0.00 3.74 7.17 4.33 5.56 0.00 0.00 3.16 46 E11a_E12a KnownJunction 0 2.74 42.82 226.10 71.89 15.87 7.44 32.55 26.29 28.99 69.49 0.00 0.00 0.00 2.41 8.90 7.78 4.30 268.62 26.54 12.59 0.00 2.94 11.69 47 I11 Intron 0 19.37 0.00 2.01 2.48 5.22 1.34 2.75 1.26 1.12 0.42 0.24 0.44 0.00 0.00 0.54 0.73 0.00 2.69 0.39 0.52 0.81 0.00 2.15 48 I11_SR1 SilentIntronRegion 0 19.51 0.00 2.02 2.49 5.26 1.35 2.77 1.27 1.13 0.42 0.24 0.44 0.00 0.00 0.55 0.73 0.00 2.70 0.39 0.52 0.81 0.00 2.17 49 ER12a ExonRegion 0 19.03 18.30 123.29 45.37 20.05 9.01 23.02 17.66 18.35 33.36 0.00 0.00 3.58 1.65 3.63 5.65 4.63 181.53 12.43 15.46 0.92 3.19 9.82 50 IG50 Intergenic 0 19.28 1.23 0.00 1.23 11.37 0.00 3.22 0.00 0.00 0.00 0.00 2.16 2.35 0.81 2.49 0.00 0.00 3.92 0.00 1.29 1.34 1.26 1.78 51 IG50_AR1 ActiveIntergenicRegion 0 20.24 1.30 0.00 1.29 11.87 0.00 3.38 0.00 0.00 0.00 0.00 2.27 2.46 0.85 2.61 0.00 0.00 3.97 0.00 1.28 1.40 1.33 1.87