Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 STAC3 Gene 0 29.17 4.80 9.58 9.14 35.47 12.07 13.44 17.83 18.40 18.89 50.64 20.32 5.86 14.10 13.79 54.98 8.30 16.51 13.55 7.99 6.90 3.88 6.65 2 332782 Transcript 0 36.76 6.11 10.04 7.15 34.66 14.77 12.56 14.53 16.05 13.34 60.12 28.30 4.71 16.45 15.44 66.16 8.50 13.33 13.21 5.94 5.31 3.63 5.69 3 IG48 Intergenic 0 6.31 5.04 7.53 13.34 33.80 6.21 14.77 17.52 17.02 26.97 2.20 3.70 3.44 2.88 6.96 10.06 7.19 16.62 11.63 10.84 6.13 4.05 7.58 4 IG48_SR2 SilentIntergenicRegion 0 2.95 6.29 4.36 8.25 27.79 4.20 12.82 14.09 12.07 21.85 1.57 1.73 4.08 3.75 3.45 6.83 5.13 14.19 7.29 7.33 5.55 3.17 6.20 5 IG48_AR2 ActiveIntergenicRegion 0 10.04 8.47 12.81 12.93 50.16 10.08 19.65 25.56 26.66 37.01 2.43 5.15 4.15 2.51 12.42 21.10 10.26 27.10 24.64 17.64 11.30 6.19 11.58 6 IG48_SR1 SilentIntergenicRegion 0 6.02 3.12 6.47 15.59 29.24 5.34 13.53 15.47 14.85 24.79 2.37 3.86 2.93 2.74 5.97 6.55 6.70 13.13 7.71 9.28 4.13 3.49 6.41 7 ER1a ExonRegion 0 5.01 1.22 8.43 11.74 19.02 2.31 10.58 5.44 12.56 15.29 2.54 0.94 1.02 4.59 7.99 3.91 1.74 8.83 9.24 6.03 6.70 6.36 3.86 8 E1_Da NovelBoundary 0 13.11 0.00 11.38 28.80 31.83 13.57 10.25 21.36 12.96 29.79 4.42 0.00 0.00 2.24 0.00 3.25 3.55 29.51 15.44 5.24 0.00 0.00 0.00 9 E1a_E2a KnownJunction 0 0.00 2.96 1.83 0.00 0.00 5.62 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.91 0.00 5.94 3.15 5.82 0.00 10 I1 Intron 0 2.06 2.82 4.43 8.74 28.96 5.47 11.30 12.33 14.05 20.99 1.07 3.07 6.76 2.97 5.22 8.87 4.12 14.34 11.27 7.68 3.52 2.02 5.71 11 I1_SR1 SilentIntronRegion 0 2.19 2.97 4.76 9.58 29.47 6.27 11.96 12.56 14.47 21.55 0.77 3.53 7.12 2.80 5.12 8.34 4.20 14.86 11.74 7.83 2.99 2.24 6.07 12 I1_AR1 ActiveIntronRegion 0 1.17 1.86 2.26 3.08 26.03 0.00 6.92 11.01 11.37 17.53 3.21 0.00 4.38 4.22 6.05 12.73 3.66 11.07 8.28 6.78 7.26 0.57 3.26 13 E2_Aa NovelBoundary 0 25.26 15.59 10.70 25.94 53.74 4.83 27.38 24.07 32.73 44.99 2.21 0.00 6.82 2.47 14.09 11.88 8.98 30.47 18.35 20.33 3.15 3.12 16.22 14 ER2a ExonRegion 0 4.83 2.67 0.97 1.24 20.77 3.37 3.42 1.86 1.33 2.29 1.44 5.49 2.52 5.50 6.32 1.82 0.00 4.52 4.42 1.97 9.05 3.27 5.57 15 E2_Da NovelBoundary 0 0.00 3.29 5.77 16.55 19.52 0.00 16.69 9.41 27.98 27.64 0.00 0.00 0.00 2.47 20.52 24.78 0.00 12.02 13.93 9.78 11.80 5.76 7.51 16 E2a_E3a KnownJunction 0 0.00 0.00 1.51 1.53 3.57 0.00 1.94 1.52 1.33 3.52 4.26 0.00 0.00 2.65 14.22 3.50 0.00 4.60 12.71 0.00 0.00 3.12 4.35 17 I2 Intron 0 5.77 7.13 9.96 15.02 44.27 2.50 12.87 23.06 19.34 46.24 3.39 6.18 14.43 2.66 3.82 9.26 4.50 21.78 12.39 10.77 9.85 4.06 6.86 18 I2_SR1 SilentIntronRegion 0 5.80 7.18 10.04 15.13 44.60 2.52 12.96 23.24 19.48 46.60 3.41 6.23 14.54 2.68 3.85 9.33 4.53 21.95 12.48 10.85 9.93 4.09 6.91 19 E3_Aa NovelBoundary 0 15.56 16.38 8.49 16.12 50.85 18.63 24.20 30.31 20.46 47.38 2.05 0.00 6.66 4.94 4.45 24.95 0.00 34.49 17.69 21.41 5.75 5.63 15.28 20 ER3a ExonRegion 1 45.73 5.43 7.12 11.14 68.51 13.71 17.35 29.74 24.27 28.39 56.05 7.11 12.64 14.20 14.45 80.21 4.56 23.17 14.76 8.91 7.14 7.23 5.87 21 E3_Da NovelBoundary 0 18.60 9.93 19.46 16.25 81.41 16.41 31.97 27.23 50.93 66.86 4.37 12.60 32.95 7.24 0.00 34.26 8.51 45.23 12.89 17.39 14.27 3.12 16.22 22 E3a_E4a KnownJunction 0 17.56 3.16 3.02 2.00 19.69 6.42 3.53 1.89 5.41 1.16 16.11 24.61 6.33 2.47 4.45 11.62 4.11 6.88 7.62 0.00 0.00 0.00 4.10 23 I3 Intron 0 7.29 5.25 9.04 16.61 24.76 7.89 13.11 26.05 28.12 38.63 10.81 4.66 10.86 5.76 5.66 20.48 4.97 20.77 17.82 14.19 5.21 4.04 10.74 24 I3_SR1 SilentIntronRegion 0 7.62 5.69 10.01 17.91 26.64 7.98 13.49 28.74 30.61 42.21 11.75 5.16 11.77 6.05 5.95 22.51 5.51 22.80 19.32 15.39 5.63 4.47 11.20 25 E4_Aa NovelBoundary 0 9.63 0.00 7.95 23.74 60.78 0.00 9.80 38.49 59.69 62.08 12.27 11.70 27.27 2.18 6.30 14.27 4.39 24.17 21.93 20.39 8.22 5.88 7.51 26 ER4a ExonRegion 0 17.49 4.21 6.36 9.46 46.36 8.85 13.48 16.98 25.42 22.58 151.56 34.59 9.33 17.60 16.16 74.76 13.24 19.55 24.41 13.27 6.14 4.06 4.67 27 E4_Da NovelBoundary 0 14.74 10.06 13.66 12.35 43.63 34.13 31.71 21.24 43.06 33.04 9.79 0.00 14.61 2.47 4.45 8.63 0.00 43.07 22.12 19.62 11.43 3.12 20.91 28 E4a_E5a KnownJunction 0 25.19 0.00 10.82 3.36 26.23 16.35 2.25 18.81 20.75 10.02 151.72 38.26 6.01 30.73 33.01 205.07 0.00 1.82 8.00 0.00 2.97 5.88 0.00 29 I4 Intron 0 8.74 7.41 5.77 5.92 27.94 5.34 7.40 8.76 9.83 17.43 0.47 0.00 4.56 2.13 4.06 4.33 0.00 7.59 7.74 5.68 8.03 2.02 2.85 30 I4_SR2 SilentIntronRegion 0 10.37 8.79 6.84 7.02 33.14 6.34 8.77 10.39 11.67 20.68 0.56 0.00 5.41 2.53 4.80 5.14 0.00 9.01 9.18 6.74 9.51 2.40 3.38 31 E5_Aa NovelBoundary 0 24.82 21.31 25.40 20.74 22.75 8.29 28.84 18.89 26.30 31.46 2.68 12.60 6.33 7.36 17.80 21.11 0.00 16.25 41.79 2.88 3.15 6.25 11.44 32 ER5a ExonRegion 0 26.01 6.10 7.13 13.61 35.99 10.45 15.62 22.64 20.03 18.02 86.03 36.12 3.15 24.01 17.17 192.82 8.86 8.83 22.78 2.68 4.56 4.88 8.09 33 E5_Da NovelBoundary 0 6.67 11.97 13.45 25.94 29.97 2.21 12.01 21.73 19.97 26.59 4.69 0.00 0.00 10.01 8.90 10.17 0.00 8.00 18.92 0.00 8.22 5.82 3.50 34 E5a_E6a KnownJunction 0 41.49 25.98 13.60 10.39 33.36 20.95 28.93 13.06 25.20 15.79 57.38 38.56 0.00 22.72 0.00 84.93 17.67 15.92 17.88 5.82 5.75 0.00 11.95 35 E5a_E7a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 I5 Intron 0 5.72 4.85 6.11 9.42 26.02 3.31 11.17 13.77 13.39 19.81 1.49 7.49 7.23 2.73 4.84 8.42 5.95 9.29 8.20 8.63 1.99 1.21 6.24 37 I5_SR1 SilentIntronRegion 0 5.74 4.86 6.13 9.44 26.08 3.31 11.20 13.80 13.43 19.86 1.50 7.51 7.25 2.74 4.85 8.44 5.97 9.31 8.23 8.65 1.99 1.21 6.26 38 E6_Aa NovelBoundary 0 3.19 2.70 2.37 22.74 24.36 0.00 12.28 13.68 16.72 25.09 0.00 0.00 21.59 0.00 5.69 24.18 0.00 17.16 8.75 11.63 5.62 0.00 11.10 39 ER6a ExonRegion 0 38.38 14.07 12.83 12.64 74.43 29.77 37.77 14.94 29.95 22.73 91.60 59.02 11.49 20.40 15.19 58.05 16.67 17.80 11.90 7.99 12.19 1.11 9.53 40 E6_Da NovelBoundary 0 3.11 3.22 8.57 12.82 33.36 0.00 12.54 4.23 24.57 18.27 7.00 0.00 0.00 2.12 9.52 6.84 0.00 22.68 4.05 8.82 5.44 0.00 6.74 41 E6a_E7a KnownJunction 0 72.90 5.79 6.98 11.32 29.46 33.39 24.25 20.25 16.96 15.58 79.44 68.87 6.66 16.42 18.91 51.95 8.13 18.12 11.95 0.00 5.93 5.33 11.27 42 I6 Intron 0 5.43 3.09 1.07 5.93 21.56 4.07 12.98 6.32 6.66 11.17 0.90 3.54 4.99 1.05 3.55 6.24 0.77 4.50 3.35 4.97 2.83 0.73 2.74 43 I6_SR1 SilentIntronRegion 0 5.51 3.13 1.08 6.01 21.86 4.12 13.15 6.40 6.75 11.31 0.91 3.59 5.05 1.06 3.59 6.33 0.78 4.53 3.39 5.01 2.87 0.74 2.78 44 E7_Aa NovelBoundary 0 2.96 0.00 3.67 5.66 3.82 0.00 2.08 4.03 17.68 22.89 0.00 5.85 6.82 0.00 0.00 3.85 3.93 6.67 4.80 13.87 0.00 0.00 3.67 45 ER7a ExonRegion 0 57.37 3.25 3.68 8.30 30.83 18.72 12.23 13.29 13.37 14.28 61.16 35.54 2.87 19.68 17.06 74.13 15.08 16.88 19.64 7.24 10.66 5.22 7.71 46 E7_Da NovelBoundary 0 13.48 2.70 5.97 1.23 20.71 2.90 12.76 19.39 13.05 20.76 2.58 6.30 0.00 5.30 0.00 3.16 4.49 21.60 0.00 8.63 9.20 2.63 12.63 47 E7a_E8a KnownJunction 0 48.97 12.37 6.09 6.73 59.34 26.41 6.14 13.39 19.21 20.50 74.76 26.41 6.82 14.89 21.39 108.35 7.95 19.32 8.94 5.69 11.92 5.33 7.94 48 I7 Intron 0 3.62 7.53 5.20 6.37 23.63 4.18 11.69 11.74 14.16 15.10 1.10 3.05 7.78 2.61 3.16 5.08 4.70 9.17 11.80 7.88 8.78 3.56 3.35 49 I7_SR1 SilentIntronRegion 0 3.66 7.61 5.26 6.44 23.90 4.23 11.81 11.87 14.30 15.26 1.11 3.08 7.87 2.64 3.20 5.14 4.76 9.27 11.93 7.97 8.88 3.60 3.38 50 E8_Aa NovelBoundary 0 7.26 0.00 3.34 19.71 32.68 0.00 18.77 21.89 31.71 35.89 6.53 6.75 6.82 5.30 13.35 19.31 4.21 38.26 27.58 5.82 13.22 8.57 32.18 51 ER8a ExonRegion 0 84.15 4.39 10.46 4.80 49.07 15.40 12.47 18.11 15.56 14.43 85.20 51.09 14.91 26.05 25.76 96.30 17.82 15.23 28.41 3.32 6.04 1.54 11.57 52 E8_Da NovelBoundary 0 28.52 3.16 22.09 12.15 19.52 2.50 19.30 30.19 44.18 53.27 7.63 19.06 0.00 9.89 11.50 37.77 16.46 34.07 8.09 17.19 33.61 8.63 16.05 53 E8a_E9a KnownJunction 0 70.61 2.70 11.44 3.96 49.66 13.63 10.42 21.77 7.99 7.79 60.65 36.61 12.99 16.89 15.33 42.64 20.10 8.00 4.52 0.00 0.00 0.00 7.68 54 I8 Intron 0 20.26 6.37 8.90 14.85 17.70 5.11 11.52 17.04 27.55 29.75 6.39 4.48 4.23 5.16 9.62 16.04 4.02 25.90 16.63 11.85 8.06 5.08 6.13 55 I8_AR1 ActiveIntronRegion 0 20.40 6.42 8.95 14.95 17.81 5.14 11.60 17.14 27.73 29.95 6.44 4.51 4.25 5.19 9.69 16.15 4.05 26.08 16.75 11.93 8.11 5.10 6.18 56 E9_Aa NovelBoundary 0 7.19 5.66 10.50 9.72 29.46 0.00 7.64 19.51 31.42 26.08 2.37 12.00 0.00 4.59 0.00 0.00 7.48 27.15 17.98 10.93 11.24 0.00 7.43 57 ER9a ExonRegion 0 53.28 3.38 12.81 7.23 32.42 15.63 15.63 28.18 19.33 17.96 65.09 37.61 3.49 23.08 15.65 59.30 8.29 15.56 5.30 8.26 9.15 2.54 9.42 58 E9_Da NovelBoundary 1 18.67 6.12 6.80 17.55 43.89 2.16 17.40 18.65 30.47 42.58 0.00 25.96 0.00 4.41 4.45 7.01 0.00 11.36 8.47 13.81 7.41 5.33 15.45 59 E9a_E10a KnownJunction 0 67.49 3.22 7.66 1.63 20.03 4.88 5.79 7.43 6.13 10.02 59.54 38.41 0.00 24.66 5.19 57.59 0.00 6.47 0.00 5.69 0.00 6.25 0.00 60 I9 Intron 0 8.89 3.05 3.83 4.27 18.46 4.40 12.31 7.73 18.22 13.34 4.06 6.26 3.48 4.10 5.89 10.70 3.96 20.38 4.78 5.74 4.63 0.63 4.40 61 I9_AR1 ActiveIntronRegion 0 7.84 2.48 1.86 2.26 8.82 2.78 5.88 6.32 15.13 8.73 6.67 3.45 1.76 2.72 5.89 8.59 4.33 10.91 7.07 3.03 1.14 1.66 0.60 62 I9_SR1 SilentIntronRegion 0 9.71 3.46 5.13 5.58 24.75 5.48 16.51 8.73 20.46 16.43 2.53 8.12 4.60 5.03 6.00 12.20 3.81 26.60 3.46 7.53 6.87 0.00 6.83 63 E10_Aa NovelBoundary 0 2.82 2.63 8.72 9.72 25.38 12.95 1.94 27.27 22.74 21.22 4.47 0.00 6.17 7.42 15.20 15.38 0.00 15.88 3.58 8.82 4.82 5.82 3.93 64 ER10a ExonRegion 0 33.34 5.08 18.83 4.06 39.47 10.58 15.25 9.71 11.69 5.60 62.78 29.47 0.00 19.05 14.39 71.96 11.49 12.97 17.64 6.87 2.80 5.37 0.11 65 E10_Da NovelBoundary 0 0.00 3.09 6.15 5.33 7.56 2.44 5.61 6.12 15.36 27.29 2.68 6.15 6.82 0.00 0.00 8.37 0.00 12.97 14.40 0.00 2.59 5.27 0.00 66 E10a_E11a KnownJunction 0 51.56 8.95 26.88 5.73 32.09 21.64 16.83 13.60 18.98 7.28 67.86 17.71 0.00 17.07 15.20 87.16 7.67 10.24 39.44 8.76 2.47 5.76 0.00 67 I10_SR1 SilentIntronRegion 0 2.48 0.00 1.07 2.38 15.69 1.07 3.88 4.53 2.14 2.99 1.13 1.79 2.26 4.76 2.40 6.93 5.81 6.46 9.30 6.24 2.58 0.00 10.33 68 E11_Aa NovelBoundary 0 3.70 0.00 6.12 10.49 15.70 4.94 3.84 22.76 18.87 32.13 0.00 0.00 6.33 4.59 22.00 10.51 0.00 30.05 13.55 5.43 3.15 2.76 3.76 69 ER11a ExonRegion 0 33.04 8.68 26.49 17.48 40.21 18.63 15.75 32.90 36.93 29.63 67.88 33.54 4.28 23.90 21.07 82.59 16.91 33.09 14.66 20.27 6.77 2.57 10.85 70 E11_Da NovelBoundary 0 0.00 3.35 0.00 11.55 12.56 0.00 4.06 17.13 22.89 13.57 2.68 0.00 0.00 0.00 6.06 0.00 3.74 30.51 16.47 6.07 3.15 0.00 12.98 71 E11a_E12a KnownJunction 0 33.27 13.42 18.75 10.72 54.58 33.22 10.20 15.16 25.20 8.70 55.54 20.26 0.00 23.60 45.00 48.96 8.60 23.42 8.75 12.02 3.15 0.00 0.00 72 E12_Aa NovelBoundary 0 0.00 0.00 3.02 6.46 4.33 0.00 5.43 6.12 20.54 7.31 2.68 0.00 0.00 2.47 10.51 4.19 3.74 11.32 12.71 0.00 0.00 0.00 3.24 73 ER12a ExonRegion 0 17.87 3.51 7.13 5.47 12.06 9.83 7.15 13.49 11.66 15.37 24.10 10.58 3.92 8.24 11.19 24.00 6.52 13.55 10.75 5.85 5.56 1.87 6.30 74 IG47 Intergenic 0 0.44 0.85 3.06 4.29 4.07 0.63 3.00 7.30 10.43 18.47 0.77 7.11 6.15 0.88 2.69 2.88 2.01 9.98 6.60 7.41 2.10 1.03 3.85 75 IG47_SR1 SilentIntergenicRegion 0 0.45 0.84 3.05 4.30 4.14 0.64 3.02 7.42 10.53 18.62 0.76 7.12 6.17 0.86 2.65 2.75 2.06 10.07 6.66 7.33 2.14 1.05 3.91