Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MBD6 Gene 0 69.40 27.12 74.48 77.98 54.30 65.94 68.38 64.08 83.41 118.45 112.73 92.74 130.42 182.17 164.15 149.99 124.13 119.11 111.87 57.49 134.87 126.02 135.74 2 431731 Transcript 0 10.46 1.28 0.00 0.00 0.00 14.25 9.61 0.00 0.21 1.61 1.88 2.35 0.00 2.83 12.68 4.76 5.00 4.17 11.38 0.00 9.51 8.63 15.27 3 355673 Transcript 0 79.25 28.46 87.44 99.05 60.42 86.06 84.90 75.74 107.29 136.48 131.88 98.53 143.34 197.79 186.65 187.32 148.76 161.21 131.14 58.55 157.09 155.19 148.50 4 300263 Transcript 0 0.00 0.00 60.08 61.36 0.00 0.00 0.00 50.81 52.29 107.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 103.01 0.00 0.00 0.00 0.00 0.00 5 ER1a ExonRegion 0 10.46 1.28 0.00 0.00 0.00 14.25 9.61 0.00 0.21 1.61 1.88 2.35 0.00 2.83 12.68 4.76 5.00 4.17 11.38 0.00 9.51 8.63 15.27 6 E1_Ab KnownBoundary 0 38.53 6.18 10.94 13.42 3.31 54.17 35.55 3.82 11.02 12.41 13.32 6.15 0.00 13.30 31.03 22.90 34.78 40.75 75.39 5.62 39.48 31.84 69.66 7 ER1b ExonRegion 0 13.70 2.74 5.86 4.23 0.00 15.42 14.84 5.35 10.23 21.92 19.64 8.72 11.57 39.87 34.21 14.93 25.75 12.65 14.02 8.05 33.74 17.22 32.28 8 E1a_E2a KnownJunction 0 17.26 0.00 23.42 12.15 0.00 9.82 17.49 20.78 32.75 56.79 62.59 18.01 8.28 58.86 54.76 30.85 62.46 46.51 41.41 29.08 67.09 51.50 71.19 9 ER2a ExonRegion 0 32.71 3.40 34.88 30.41 15.01 16.99 14.50 26.03 40.35 52.74 65.57 15.63 14.22 115.31 103.63 81.97 90.57 96.29 105.71 51.40 74.20 58.44 123.57 10 E2a_E3a KnownJunction 0 50.60 8.22 45.89 51.84 30.90 26.46 27.47 33.93 67.27 56.49 79.13 44.11 21.10 154.04 176.77 159.45 101.36 147.57 138.73 57.53 77.10 80.03 203.16 11 I2 Intron 0 5.20 1.11 5.98 4.43 4.38 17.50 10.11 4.21 10.04 13.98 8.43 9.86 1.28 14.30 16.66 8.92 12.60 16.28 14.77 5.80 11.42 9.09 10.41 12 I2_AR1 ActiveIntronRegion 0 5.25 1.12 6.04 4.48 4.43 17.69 10.22 4.26 10.14 14.13 8.53 9.92 1.29 14.46 16.84 9.01 12.74 16.46 14.93 5.87 11.54 9.19 10.52 13 E3_Aa NovelBoundary 0 23.78 2.63 10.26 12.45 11.88 26.41 29.46 16.84 27.11 32.48 9.95 13.65 6.82 19.31 34.49 4.36 17.30 46.93 0.00 8.44 17.98 15.12 23.13 14 ER3a ExonRegion 0 37.36 11.27 48.25 37.00 24.69 34.19 34.10 39.07 74.29 101.55 113.79 54.61 36.87 153.26 146.71 107.08 122.59 111.50 82.61 69.75 126.62 93.67 116.18 15 E3a_E4a KnownJunction 0 44.23 18.35 47.51 44.78 49.32 71.83 63.59 45.14 108.51 107.64 90.60 121.69 73.05 178.06 171.21 126.12 123.05 111.59 97.51 81.62 137.33 118.67 129.07 16 ER4a ExonRegion 0 50.16 17.79 52.76 63.47 32.84 68.71 56.58 64.52 104.03 134.41 151.20 86.59 104.32 203.38 192.07 197.00 182.48 184.13 120.02 85.46 128.50 128.69 150.08 17 E4a_E5a KnownJunction 1 97.80 45.06 70.52 78.18 51.19 79.73 61.52 78.12 129.60 185.43 188.47 44.56 79.38 212.67 226.10 272.15 193.36 206.44 187.58 91.40 167.97 218.42 221.77 18 ER5a ExonRegion 1 62.44 38.81 62.09 62.92 31.89 65.71 48.66 68.99 111.98 168.98 173.80 48.35 71.91 218.31 207.20 204.58 187.33 181.23 136.17 86.88 154.44 196.55 187.46 19 ER5b ExonRegion 0 50.75 19.14 42.12 63.19 30.02 38.55 41.64 57.67 95.11 136.71 129.08 81.06 100.11 189.46 158.11 145.22 147.45 140.25 125.47 70.59 126.71 146.48 128.73 20 E5b_E6a KnownJunction 0 130.02 21.71 51.06 92.40 23.85 39.35 61.92 68.72 143.75 163.97 150.93 110.74 93.01 126.08 149.08 214.99 191.87 191.64 197.18 78.87 144.81 184.80 119.85 21 ER6a ExonRegion 0 59.34 19.54 38.26 43.91 41.89 60.48 69.95 50.20 85.95 117.18 130.32 127.78 208.56 234.57 147.41 159.23 156.11 134.38 136.20 61.68 161.50 133.25 147.52 22 E6_Ab KnownBoundary 1 12.74 5.53 15.52 15.45 24.28 23.62 19.78 22.96 40.60 56.71 30.80 100.83 200.64 104.60 51.42 77.84 46.47 41.62 46.50 30.23 53.56 59.21 49.60 23 ER6b ExonRegion 0 36.23 12.69 34.03 27.89 24.23 56.70 40.75 35.26 53.41 84.45 87.75 63.13 105.30 176.34 126.33 119.56 107.77 91.97 82.89 42.23 106.17 81.62 109.15 24 E6_Da KnownBoundary 0 66.23 15.66 63.78 63.66 39.13 68.43 52.77 83.96 105.99 127.54 104.92 91.53 141.39 307.49 191.11 157.05 124.82 131.37 162.45 91.15 132.57 151.06 166.46 25 ER6c ExonRegion 0 73.59 24.41 71.82 61.29 45.10 65.07 66.00 63.61 92.27 124.98 131.73 86.37 122.01 214.46 178.95 155.06 149.83 137.65 116.72 74.14 153.46 117.92 116.39 26 E6b_E7a KnownJunction 0 73.79 30.78 100.88 58.33 50.34 60.65 55.73 54.42 84.40 94.50 87.60 32.41 85.87 143.39 133.01 100.83 151.94 116.40 71.81 54.01 161.61 94.30 94.16 27 E7_Aa NovelBoundary 0 16.00 3.16 19.25 27.27 7.89 25.27 21.82 11.95 12.27 25.98 5.05 6.30 6.49 2.24 29.79 4.10 20.20 28.44 8.38 9.14 2.97 18.92 3.24 28 ER7a ExonRegion 0 79.41 32.09 92.95 86.48 56.11 80.21 76.53 68.54 100.75 134.96 125.33 95.40 127.30 194.40 196.90 181.02 127.51 136.48 129.16 68.08 157.22 145.83 157.15 29 E7_Da NovelBoundary 0 41.19 6.71 20.70 10.69 30.81 20.90 27.56 16.27 9.75 12.17 5.11 6.30 13.96 17.36 20.89 28.62 0.00 18.74 4.24 3.20 14.33 5.69 20.74 30 E7a_E8a KnownJunction 1 100.61 44.79 32.64 28.13 52.80 50.54 64.04 28.51 32.41 64.60 51.33 74.12 99.51 96.12 135.11 136.89 51.80 48.09 43.95 29.98 54.98 77.83 80.41 31 I7 Intron 0 13.21 7.17 8.42 13.77 15.97 20.89 22.99 13.97 15.48 15.29 14.68 14.09 15.94 21.28 17.31 27.41 13.43 25.43 17.28 9.81 20.33 29.96 11.15 32 I7_AR1 ActiveIntronRegion 0 14.27 7.75 9.10 14.88 17.25 22.57 24.84 15.09 16.72 16.52 15.86 15.23 17.22 22.99 18.71 29.60 14.51 27.47 18.67 10.60 21.96 32.37 12.05 33 E8_Aa NovelBoundary 0 61.79 36.24 29.09 46.48 27.25 92.16 73.35 29.24 23.15 34.68 36.01 26.56 20.45 38.26 53.77 93.48 45.16 53.52 50.07 14.96 32.43 46.90 28.77 34 ER8a ExonRegion 0 75.62 56.34 66.49 68.32 52.91 72.73 87.70 40.79 68.99 94.43 76.17 91.37 88.46 157.79 137.97 145.38 76.41 115.15 89.80 43.09 125.88 109.09 123.93 35 E8_Ab KnownBoundary 0 54.23 41.05 73.30 84.74 42.53 76.09 75.52 58.53 78.65 102.26 85.71 103.98 80.03 170.88 146.24 150.90 77.23 129.71 81.41 48.58 122.07 108.08 139.82 36 ER8b ExonRegion 0 26.65 21.22 78.11 73.63 27.44 53.32 54.96 48.66 69.01 88.72 81.43 78.60 106.55 181.32 148.63 170.48 112.91 107.31 77.02 35.08 123.63 100.49 113.93 37 E8_Da NovelBoundary 1 28.23 9.41 11.29 20.48 18.17 24.02 47.56 23.37 22.80 21.65 14.42 49.97 0.00 47.15 14.96 20.17 17.95 28.81 15.72 16.55 14.33 10.90 12.12 38 E8a_E9a KnownJunction 0 29.93 16.31 91.42 83.34 23.94 49.46 47.25 54.51 67.19 91.17 91.44 47.57 86.68 160.52 139.81 185.08 163.25 107.45 79.91 26.72 128.31 106.12 118.06 39 I8 Intron 0 21.93 9.98 16.93 11.63 29.92 31.01 47.67 8.43 13.05 23.31 11.60 8.82 6.62 20.66 14.52 17.83 13.50 21.80 18.24 9.86 15.03 14.21 18.42 40 I8_AR1 ActiveIntronRegion 0 22.17 10.08 17.12 11.76 30.24 31.34 48.19 8.52 13.19 23.56 11.72 8.92 6.69 20.89 14.68 18.03 13.65 22.03 18.42 9.97 15.19 14.36 18.62 41 E9_Aa NovelBoundary 0 77.57 27.36 34.98 40.89 14.77 36.68 43.81 13.18 17.59 33.20 30.22 24.46 21.59 26.72 0.00 39.82 22.25 41.33 40.38 12.66 14.95 26.94 18.52 42 ER9a ExonRegion 0 43.28 22.67 89.97 79.27 35.98 62.88 51.74 60.01 77.62 109.38 83.91 67.44 58.57 164.27 136.63 122.26 106.97 92.17 59.08 37.61 129.69 92.21 98.07 43 E9a_E10a KnownJunction 0 71.64 29.86 101.47 131.62 58.66 76.72 99.90 78.08 84.35 117.01 78.65 43.36 38.63 144.39 159.22 137.49 116.88 129.04 94.03 39.25 145.12 107.16 142.56 44 I9 Intron 0 3.35 4.02 6.50 5.62 2.12 11.60 20.41 7.13 2.91 3.38 5.35 4.23 1.53 2.76 6.88 8.23 3.92 7.59 8.82 1.68 3.48 1.65 11.61 45 I9_SR1 SilentIntronRegion 0 3.57 4.29 6.84 5.98 2.26 12.37 21.62 7.44 3.08 3.60 5.64 4.51 1.63 2.94 7.24 8.77 4.17 8.05 9.40 1.79 3.72 1.76 12.09 46 E10_Aa NovelBoundary 0 14.97 2.50 10.38 5.86 3.65 12.89 21.82 21.28 13.45 19.13 9.53 0.00 12.01 2.24 18.54 14.18 18.79 14.59 12.52 4.86 4.70 8.45 9.65 47 ER10a ExonRegion 0 73.92 34.47 62.34 70.80 54.95 78.03 69.47 51.21 57.94 92.35 82.50 44.84 65.43 158.37 135.15 120.94 99.03 98.25 83.44 30.53 110.44 88.23 107.20 48 E10_Da KnownBoundary 0 112.39 28.74 39.74 76.01 42.95 55.20 51.49 23.95 52.75 82.31 70.65 16.66 27.76 83.17 61.44 127.49 63.49 128.22 100.90 30.17 88.34 84.32 92.28 49 E10a_E10b KnownJunction 0 0.00 0.00 60.08 61.36 0.00 0.00 0.00 50.81 52.29 107.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 103.01 0.00 0.00 0.00 0.00 0.00 50 E10_Ab KnownBoundary 1 118.24 18.48 56.06 52.07 16.98 33.96 38.38 50.56 49.19 83.41 98.60 30.61 12.50 60.57 35.97 84.08 103.88 86.68 39.81 19.81 111.32 125.53 124.37 51 ER10b ExonRegion 0 173.13 36.20 96.80 121.02 63.15 79.59 86.85 77.43 107.70 174.10 184.40 79.66 105.99 247.19 238.48 212.21 188.15 215.82 156.08 45.53 200.98 207.52 229.65 52 ER10c ExonRegion 0 128.43 28.17 103.96 115.90 40.97 59.80 72.86 81.31 106.24 176.81 158.07 86.89 134.28 238.32 222.32 183.08 160.56 187.14 140.25 50.77 176.45 164.58 179.93 53 E10b_E11a KnownJunction 0 67.12 21.51 93.17 149.03 29.12 107.89 123.88 86.13 108.39 166.06 138.67 117.49 161.84 290.48 272.70 191.23 172.70 187.24 120.29 68.39 222.46 148.12 162.96 54 ER11a ExonRegion 0 45.35 17.14 97.85 140.38 22.55 101.64 107.81 89.14 104.46 158.60 146.90 110.09 178.89 255.91 227.13 194.04 170.23 177.65 110.58 59.57 208.41 145.55 159.84 55 ER11b ExonRegion 0 46.14 16.27 91.17 131.93 33.71 120.66 123.66 91.95 113.38 149.79 157.72 116.03 192.29 239.72 215.27 209.24 188.81 174.43 124.87 61.70 205.83 147.51 155.64 56 ER11c ExonRegion 0 49.99 14.31 102.97 154.99 59.05 143.16 142.76 108.30 134.12 156.73 167.23 104.21 196.50 232.64 203.89 215.94 201.47 185.16 150.37 59.28 212.70 171.78 139.95 57 E11c_E12a KnownJunction 0 78.68 14.34 123.92 157.39 95.84 184.44 150.29 109.71 157.06 151.18 151.83 104.88 179.21 228.44 251.44 230.97 178.68 182.27 159.63 58.61 172.17 208.87 141.36 58 ER11d ExonRegion 0 58.73 11.35 124.78 164.00 84.29 154.34 138.13 118.54 158.40 163.43 169.93 100.30 173.14 237.39 232.10 229.10 188.43 216.80 159.00 56.38 190.99 188.73 143.16 59 ER12a ExonRegion 0 49.11 19.57 128.55 133.12 104.23 123.49 89.43 99.68 142.79 170.06 152.88 95.05 169.13 241.71 228.02 268.70 169.02 225.83 163.20 56.22 194.00 217.34 212.72 60 E12a_E13a KnownJunction 0 44.16 42.10 139.68 152.33 78.52 89.61 74.11 112.46 136.86 172.53 162.04 154.10 224.50 247.34 211.26 263.52 148.57 278.57 169.60 55.22 176.68 195.33 221.94 61 ER13a ExonRegion 0 95.62 38.23 110.49 123.87 93.48 71.26 87.52 93.89 89.57 134.74 116.89 128.67 181.07 168.84 186.64 157.50 116.78 104.41 124.35 64.10 129.55 152.98 154.90 62 IG3 Intergenic 0 56.64 60.82 30.47 23.65 93.50 111.42 91.29 47.84 30.13 34.45 40.77 22.77 16.85 26.71 49.86 26.20 25.98 19.39 36.10 43.54 26.36 29.52 18.49 63 IG3_AR1 ActiveIntergenicRegion 0 57.34 61.57 30.85 23.94 94.60 112.73 92.35 48.42 30.50 34.88 41.24 23.05 17.06 27.03 50.46 26.53 26.28 19.62 36.47 44.06 26.62 29.87 18.72