Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GRASP Gene 0 18.14 3.07 67.44 29.31 19.72 11.75 10.86 33.61 54.85 23.77 0.25 0.19 0.00 0.36 0.24 0.46 1.72 5.00 16.34 5.99 50.04 47.54 63.18 2 293662 Transcript 0 23.75 2.24 79.15 34.10 28.24 14.67 11.14 40.76 74.95 29.83 0.36 0.06 0.00 0.42 0.77 0.97 2.75 3.69 18.49 6.28 60.24 54.96 69.92 3 380039 Transcript 0 0.42 0.00 0.29 0.05 0.00 0.22 0.26 1.38 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 4 IG26 Intergenic 0 3.41 7.87 9.75 7.77 13.92 3.89 12.51 11.85 10.80 15.41 0.20 0.58 0.18 0.19 0.37 1.28 1.86 9.23 8.74 9.70 1.71 2.03 2.79 5 IG26_SR1 SilentIntergenicRegion 0 3.52 8.53 10.20 8.13 15.31 4.06 13.59 11.90 11.05 15.52 0.23 0.65 0.20 0.21 0.42 1.44 1.90 9.52 9.36 10.22 1.75 2.24 2.91 6 ER1a ExonRegion 0 7.52 0.52 17.89 5.43 3.69 2.73 3.35 11.52 16.78 7.99 0.01 0.00 0.00 0.00 0.00 0.00 1.22 2.73 5.50 2.52 18.41 11.01 31.76 7 E1a_E2a KnownJunction 0 20.82 3.22 66.23 15.98 13.75 5.00 3.80 24.07 41.72 12.25 0.00 0.00 0.00 0.00 0.00 0.00 4.11 0.00 4.61 3.26 30.83 14.45 11.10 8 I1 Intron 0 9.14 0.81 20.82 7.21 7.16 3.01 4.32 12.15 26.59 10.15 0.00 0.42 0.00 0.00 0.05 0.08 1.31 4.89 5.49 4.17 21.66 12.54 29.19 9 I1_AR1 ActiveIntronRegion 0 4.06 0.00 13.25 2.99 2.81 0.48 1.49 5.79 17.06 7.75 0.00 0.00 0.00 0.00 0.00 0.39 0.87 3.95 4.88 3.52 14.46 5.70 12.21 10 I1_SR1 SilentIntronRegion 0 9.28 0.43 15.33 4.31 4.89 5.14 4.12 9.45 21.22 5.87 0.00 0.00 0.00 0.00 0.00 0.00 1.37 5.18 4.30 2.49 18.01 9.49 16.22 11 I1_AR2 ActiveIntronRegion 0 11.48 1.25 28.79 10.80 7.42 5.04 5.12 26.70 42.94 14.73 0.00 1.11 0.00 0.00 0.00 0.00 2.83 5.75 10.00 5.35 27.05 27.61 67.92 12 I1_SR2 SilentIntronRegion 0 9.76 0.76 20.12 10.14 11.51 1.94 6.18 10.16 26.07 12.87 0.00 1.09 0.00 0.00 0.00 0.00 0.49 5.04 5.37 6.28 27.70 11.84 23.90 13 I1_AR3 ActiveIntronRegion 0 11.84 1.93 30.24 9.35 10.63 1.85 5.00 9.87 28.54 11.23 0.00 0.00 0.00 0.00 0.33 0.00 1.02 4.49 3.07 3.75 22.98 9.25 31.87 14 E2_Aa NovelBoundary 0 10.82 0.00 45.00 4.99 24.19 14.42 9.76 12.77 24.68 7.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.19 4.52 3.00 19.95 11.02 44.05 15 ER2a ExonRegion 0 18.16 0.73 59.75 21.97 29.06 19.92 9.72 37.51 58.42 16.72 1.93 0.00 0.00 0.00 0.00 0.00 2.18 0.00 13.00 7.23 36.98 38.75 35.12 16 E2_Da NovelBoundary 0 0.00 3.35 8.99 4.13 3.82 2.67 2.08 4.48 17.16 4.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 4.71 0.00 14.89 16.23 37.22 17 E2a_E3a KnownJunction 0 29.41 0.00 75.22 28.27 41.26 18.40 14.18 46.50 81.94 25.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.48 24.09 5.31 48.56 48.80 53.44 18 I2 Intron 0 4.87 0.78 10.31 4.60 6.16 2.62 6.42 5.30 10.01 4.05 0.00 0.12 0.00 0.14 0.07 0.31 0.35 2.72 2.11 1.63 12.45 7.41 26.62 19 I2_SR1 SilentIntronRegion 0 4.08 0.43 9.48 4.10 6.08 2.23 5.28 4.80 9.49 4.00 0.00 0.00 0.00 0.12 0.00 0.07 0.46 3.23 1.77 1.53 11.00 6.54 23.80 20 I2_AR1 ActiveIntronRegion 0 10.83 6.25 13.71 7.85 15.74 19.91 21.62 3.79 12.29 3.25 0.00 0.00 0.00 0.00 0.00 1.70 0.00 2.38 15.09 8.71 26.60 14.83 74.46 21 I2_SR2 SilentIntronRegion 0 6.85 1.28 12.83 5.95 5.20 1.70 8.37 7.26 11.56 4.37 0.00 0.57 0.00 0.22 0.33 0.96 0.00 1.01 1.59 1.06 15.66 9.49 30.22 22 E3_Aa NovelBoundary 0 9.56 0.00 19.37 6.89 8.66 4.71 12.37 7.19 19.91 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.14 0.00 0.00 15.88 5.33 45.16 23 ER3a ExonRegion 0 27.67 0.00 85.35 38.95 45.78 20.97 19.57 42.46 95.01 35.01 0.00 0.00 0.00 0.00 1.42 1.95 2.22 4.43 19.23 4.76 73.20 69.44 87.24 24 E3_Da NovelBoundary 0 3.11 0.00 22.03 1.63 4.33 0.00 6.14 12.45 18.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.07 9.04 3.00 8.77 0.00 23.39 25 E3a_E4a KnownJunction 0 40.38 3.22 117.94 50.91 48.22 27.26 14.22 46.17 99.10 49.26 0.00 0.00 0.00 0.00 4.45 3.93 4.39 6.38 8.94 6.14 103.91 93.69 96.03 26 E4_Aa NovelBoundary 0 13.41 0.00 20.90 1.40 4.33 0.00 6.71 7.72 33.33 3.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 3.26 5.62 0.00 16.48 27 ER4a ExonRegion 0 25.69 4.56 122.58 54.03 28.94 13.26 11.70 60.73 103.50 49.70 0.96 0.46 0.00 0.88 0.25 1.90 3.33 8.41 28.61 12.17 95.44 82.43 124.76 28 E4_Da NovelBoundary 0 14.60 3.35 58.69 2.06 3.57 8.29 4.24 28.01 51.30 12.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 25.98 3.26 26.01 9.12 52.33 29 E4a_E6a KnownJunction 0 20.37 5.66 88.23 57.27 15.20 9.82 12.59 57.18 103.09 41.90 0.00 0.00 0.00 2.47 0.00 0.00 4.58 4.10 43.95 8.88 74.57 81.13 119.94 30 ER5a ExonRegion 0 0.42 0.00 0.29 0.05 0.00 0.22 0.26 1.38 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 31 I5 Intron 0 38.88 4.60 51.32 19.40 24.45 5.42 14.85 30.08 47.99 10.81 0.09 1.15 0.00 0.00 0.19 0.27 1.68 2.84 12.06 4.12 18.41 23.85 46.36 32 I5_AR1 ActiveIntronRegion 0 24.95 7.87 45.95 12.61 27.21 7.20 13.99 31.49 57.18 12.06 0.00 2.67 0.00 0.00 0.77 0.00 5.00 3.89 10.19 6.18 13.47 15.81 37.98 33 I5_SR1 SilentIntronRegion 0 40.93 4.16 52.13 20.40 24.06 5.16 14.92 29.88 46.60 10.60 0.10 0.95 0.00 0.00 0.11 0.32 1.20 2.69 12.35 3.85 19.13 24.95 47.72 34 E6_Aa NovelBoundary 0 38.75 9.14 91.75 45.08 16.21 5.00 22.66 51.84 56.22 14.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.93 13.27 3.07 16.62 35.15 56.17 35 ER6a ExonRegion 0 37.92 7.12 157.56 94.92 55.54 32.01 34.44 80.58 138.54 52.93 1.95 1.43 0.00 1.36 0.00 0.00 2.21 10.79 48.70 10.23 115.44 132.46 154.27 36 E6_Da NovelBoundary 0 13.63 0.00 90.12 10.55 22.67 0.00 11.61 30.76 54.14 8.14 0.00 5.25 0.00 0.00 0.00 0.00 0.00 4.44 4.33 0.00 9.70 5.57 30.90 37 E6a_E7a KnownJunction 0 51.86 13.75 181.51 115.94 134.80 60.48 61.56 109.22 136.17 54.61 2.00 0.00 0.00 0.00 0.00 0.00 0.00 20.02 36.14 2.88 103.23 152.04 188.74 38 I6 Intron 0 11.24 1.08 21.34 2.16 12.79 0.97 2.11 6.84 12.71 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.00 5.53 15.60 39 I6_SR1 SilentIntronRegion 0 11.48 1.10 21.74 2.20 13.07 0.99 2.14 6.97 12.97 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.15 5.65 15.87 40 E7_Aa NovelBoundary 0 42.16 3.29 72.44 17.41 28.35 2.84 11.04 27.97 61.83 3.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.05 13.93 0.00 5.75 7.59 40.80 41 ER7a ExonRegion 0 36.77 5.98 133.47 88.53 68.13 37.50 34.32 84.93 110.70 41.78 1.01 0.00 0.00 0.00 0.74 0.00 3.60 12.41 33.66 8.19 107.39 116.58 133.16 42 E7_Da NovelBoundary 0 41.27 8.88 93.20 19.11 30.65 2.84 25.13 29.04 64.50 9.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.68 3.95 3.26 25.82 9.37 72.56 43 E7a_E8a KnownJunction 0 28.89 9.08 117.23 75.85 54.92 23.34 27.65 67.94 114.61 37.18 5.16 0.00 0.00 0.00 4.45 0.00 4.77 11.48 32.38 11.70 78.40 81.01 113.53 44 I7 Intron 0 9.04 3.26 41.93 8.68 9.29 0.98 8.48 21.32 34.89 3.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 5.10 1.70 11.18 7.79 21.96 45 I7_SR1 SilentIntronRegion 0 9.14 3.29 42.36 8.77 9.39 0.99 8.56 21.55 35.26 3.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.97 5.14 1.72 11.30 7.87 22.19 46 E8_Aa NovelBoundary 0 17.41 0.00 105.56 20.04 11.38 7.78 13.47 18.20 47.57 6.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 8.47 5.75 2.66 5.20 15.96 47 ER8a ExonRegion 0 34.75 4.89 111.73 68.65 27.52 16.75 16.42 58.43 99.92 47.66 0.66 2.71 0.00 1.02 0.82 2.26 1.43 12.11 23.72 14.93 84.96 78.99 116.63 48 E8_Da NovelBoundary 0 33.27 2.43 139.88 25.60 15.28 2.50 7.24 30.07 58.30 11.44 0.00 0.00 0.00 3.00 0.00 0.00 0.00 3.90 4.80 2.43 11.12 11.14 28.85 49 E8a_E9a KnownJunction 0 44.08 0.00 110.94 78.71 26.83 7.95 11.48 59.19 87.07 50.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.42 23.06 5.75 64.93 93.56 89.03 50 I8 Intron 0 6.23 0.63 40.48 5.67 3.73 1.99 3.69 8.78 22.54 4.24 0.00 0.00 0.00 0.00 0.00 0.00 0.51 3.70 3.46 1.65 7.17 11.95 16.39 51 I8_SR1 SilentIntronRegion 0 8.30 1.77 26.27 6.19 3.50 3.20 5.19 8.98 17.64 3.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.60 2.78 0.00 8.65 17.26 17.92 52 I8_AR1 ActiveIntronRegion 0 5.14 0.00 48.78 5.43 3.90 1.34 2.89 8.76 25.48 4.57 0.00 0.00 0.00 0.00 0.00 0.00 0.80 3.79 3.87 2.58 6.42 9.11 15.69 53 E9_Aa NovelBoundary 0 15.04 3.29 88.52 9.92 0.00 2.90 4.20 23.58 42.65 6.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.52 3.86 5.69 5.50 5.51 35.00 54 ER9a ExonRegion 0 16.75 3.37 63.76 23.35 16.08 10.21 9.19 29.36 47.80 21.43 0.00 0.00 0.00 0.35 0.22 0.39 1.58 4.39 14.63 5.56 44.86 42.44 53.56 55 IG27_AR5 ActiveIntergenicRegion 0 0.00 2.38 4.14 2.83 2.08 2.14 1.55 1.00 0.72 3.33 1.51 0.00 0.00 1.76 0.00 1.16 2.57 5.12 11.16 6.63 0.86 8.11 15.58 56 IG27_SR5 SilentIntergenicRegion 0 0.60 1.10 1.07 0.73 0.00 1.04 1.45 0.73 0.10 1.34 0.00 0.00 0.00 0.28 0.00 0.00 0.00 1.48 0.94 2.62 0.00 1.18 11.84 57 IG27_AR6 ActiveIntergenicRegion 0 0.27 0.80 6.71 1.58 0.68 0.23 2.86 0.98 1.58 1.13 0.00 0.00 0.49 0.78 0.26 0.75 1.25 3.13 4.41 2.86 0.00 4.73 18.23