Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TARBP2 Gene 0 37.18 31.85 80.09 75.00 49.33 79.72 52.46 60.26 45.05 40.11 96.64 18.51 13.17 109.45 117.72 87.92 70.44 66.13 80.65 44.64 56.30 45.16 53.77 2 266987 Transcript 0 3.84 2.17 8.41 4.66 4.87 16.51 7.26 4.57 6.33 2.91 6.25 0.10 0.66 6.55 9.42 5.84 6.47 11.47 7.61 14.07 10.33 4.17 7.42 3 456234 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 426345 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 394357 Transcript 0 8.75 7.74 5.04 9.83 3.26 4.03 10.31 6.06 3.06 1.44 12.36 0.00 3.87 9.50 8.03 10.38 9.52 11.76 9.79 5.61 7.90 0.92 1.94 6 IG29 Intergenic 0 2.69 1.57 6.12 4.86 7.01 3.11 9.49 8.64 9.72 3.76 5.51 5.73 0.60 5.85 9.06 5.38 4.33 7.79 10.56 11.81 8.49 6.99 17.55 7 IG29_AR1 ActiveIntergenicRegion 0 1.52 3.50 1.05 2.34 3.07 1.05 14.62 4.43 3.16 1.96 1.11 0.00 0.00 6.95 2.61 6.81 0.00 20.55 18.25 12.19 29.54 10.75 18.81 8 IG29_SR1 SilentIntergenicRegion 0 0.59 0.00 1.67 1.65 3.17 2.05 4.68 5.51 5.57 3.48 1.51 1.97 0.00 1.35 2.74 1.82 0.99 1.84 4.49 3.03 5.89 6.09 30.59 9 IG29_AR2 ActiveIntergenicRegion 0 4.28 2.41 9.79 7.36 10.14 4.09 12.18 11.30 13.37 4.17 8.80 9.01 1.08 8.81 14.18 7.66 7.14 10.33 13.79 17.79 7.72 7.15 8.49 10 ER1a ExonRegion 0 5.59 0.00 10.03 3.43 7.63 7.45 4.17 5.91 3.25 0.92 6.90 4.60 0.00 6.38 8.27 2.90 9.86 3.10 9.12 11.90 9.79 4.19 8.95 11 E1_Da KnownBoundary 0 6.74 0.00 17.92 7.62 4.33 2.61 0.00 8.79 8.91 1.45 7.00 5.70 5.84 0.00 17.80 8.03 15.52 1.82 7.34 15.08 13.96 8.21 0.00 12 E1a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER1b ExonRegion 0 3.84 2.17 8.41 4.66 4.87 16.51 7.26 4.57 6.33 2.91 6.25 0.10 0.66 6.55 9.42 5.84 6.47 11.47 7.61 14.07 10.33 4.17 7.42 14 E1_Ab KnownBoundary 0 0.00 2.83 21.44 0.00 3.74 2.21 0.00 0.00 6.28 6.85 8.63 0.00 0.00 2.35 14.59 0.00 3.65 4.35 22.59 15.08 8.28 8.39 7.26 15 ER1c ExonRegion 0 23.56 20.58 32.07 25.51 30.51 83.82 41.92 26.52 24.13 14.10 36.33 6.96 8.27 39.19 49.12 31.40 44.04 30.31 42.64 22.08 45.20 21.51 36.43 16 E1b_E3a KnownJunction 0 5.78 15.13 59.10 48.38 21.90 99.15 11.57 47.97 44.33 30.06 59.23 0.00 6.82 17.01 28.06 24.52 68.91 40.17 45.74 22.37 53.38 25.96 20.49 17 ER2a ExonRegion 0 10.98 12.25 6.59 8.04 2.35 8.06 16.52 7.97 3.14 1.65 22.46 0.00 0.93 19.00 16.06 20.75 19.04 12.98 19.58 8.09 4.26 1.83 3.87 18 E2a_E3a KnownJunction 0 6.52 3.22 3.49 11.62 4.16 0.00 4.11 4.15 2.98 1.24 2.26 0.00 6.82 0.00 0.00 0.00 0.00 10.53 0.00 3.13 11.55 0.00 0.00 19 E3_Ab NovelBoundary 0 2.82 13.35 17.98 11.35 6.28 34.64 10.95 25.96 19.79 16.14 37.01 0.00 0.00 9.71 9.27 6.75 36.28 14.67 17.88 14.83 21.13 6.98 9.56 20 ER3a ExonRegion 1 10.23 20.00 48.20 47.25 25.87 93.22 19.64 50.41 42.61 24.28 81.83 1.44 17.20 34.65 41.58 29.72 68.22 60.05 45.66 29.08 65.74 22.22 22.51 21 ER3b ExonRegion 0 16.16 30.63 87.83 88.61 38.81 79.55 33.66 76.98 63.19 52.64 104.74 26.08 10.32 143.37 155.80 135.54 88.54 119.39 112.96 60.94 80.06 57.97 78.70 22 E3a_E4a KnownJunction 0 21.34 29.86 108.13 101.49 75.89 114.54 78.48 85.48 83.01 64.63 109.13 55.07 6.82 125.20 169.23 212.25 89.39 141.15 160.00 40.72 46.39 119.96 78.53 23 ER4a ExonRegion 0 20.90 31.25 114.66 80.44 73.54 180.14 105.62 98.89 57.28 64.82 161.28 39.47 17.94 156.53 178.50 126.21 116.52 93.66 111.27 52.74 89.73 78.04 70.91 24 E4_Da NovelBoundary 0 12.82 8.62 25.81 39.92 12.39 86.65 51.32 32.04 52.72 15.74 33.90 6.15 12.50 55.39 42.28 4.19 29.73 42.66 32.57 29.91 29.65 19.96 18.95 25 E4a_E5a KnownJunction 0 30.15 45.19 101.56 85.00 36.59 156.22 89.47 61.90 37.56 39.70 131.61 20.86 12.01 138.56 123.49 91.17 103.23 64.13 34.26 36.24 65.11 61.91 55.66 26 I4 Intron 0 31.85 20.82 26.20 35.00 49.62 62.08 34.17 29.29 36.39 15.40 27.90 5.03 6.03 41.53 24.89 31.46 26.57 34.72 38.45 22.15 24.28 28.62 27.23 27 I4_AR1 ActiveIntronRegion 0 34.06 20.50 24.92 31.93 47.40 61.75 34.31 28.01 33.35 14.52 26.18 5.13 5.71 43.85 25.59 27.70 26.42 33.72 35.13 22.37 24.54 28.48 26.77 28 I4_SR1 SilentIntronRegion 0 26.44 21.89 29.82 43.36 55.96 63.70 34.21 32.94 44.68 17.87 32.67 4.86 6.95 36.02 23.37 41.57 27.22 37.73 47.52 21.85 23.89 29.31 28.75 29 E5_Aa NovelBoundary 0 41.64 26.77 40.60 40.09 111.04 105.45 60.28 29.45 59.06 16.36 21.85 7.65 6.17 59.33 44.63 24.10 24.59 39.09 40.10 23.39 33.05 41.33 45.67 30 ER5a ExonRegion 0 90.44 89.73 162.25 109.78 119.02 178.22 110.08 108.71 70.84 72.36 177.26 32.56 29.12 209.24 181.24 185.73 132.83 97.87 127.18 56.76 93.98 101.18 81.00 31 E5_Da NovelBoundary 0 32.60 42.16 30.34 72.05 50.08 43.04 18.15 44.48 46.87 19.85 31.64 0.00 11.69 31.02 41.16 44.01 31.32 31.92 46.21 18.15 28.29 10.29 27.91 32 E5a_E6a KnownJunction 0 155.66 55.45 162.74 127.56 105.94 175.35 120.48 107.29 53.82 70.94 227.37 35.11 18.67 226.03 263.06 312.91 175.88 90.49 224.19 59.63 125.47 141.57 115.24 33 I5 Intron 0 51.78 41.10 34.69 62.89 83.55 62.99 45.13 38.65 48.05 18.83 34.03 14.58 9.38 32.61 32.96 30.16 16.32 45.57 35.92 23.81 24.65 33.07 33.62 34 I5_AR1 ActiveIntronRegion 0 51.94 41.24 34.80 63.10 83.83 63.20 45.28 38.78 48.21 18.89 34.15 14.63 9.41 32.73 33.07 30.26 16.37 45.72 36.04 23.89 24.74 33.18 33.73 35 E6_Aa NovelBoundary 1 84.09 42.82 20.05 50.24 92.87 64.11 44.60 46.62 50.58 25.47 32.85 0.00 19.80 32.14 34.49 45.20 8.13 42.53 26.17 12.02 24.15 36.68 51.56 36 ER6a ExonRegion 0 63.70 36.30 110.03 81.62 74.30 117.34 82.83 78.89 39.46 47.15 144.04 37.54 26.02 163.72 157.03 180.20 124.21 62.55 117.73 51.76 88.57 63.50 91.36 37 E6a_E7a KnownJunction 0 70.09 41.70 128.47 106.48 63.92 140.09 103.65 83.87 60.76 49.72 127.45 12.45 19.64 120.61 159.34 95.53 103.41 73.00 72.94 43.59 49.92 27.43 71.71 38 I6_AR2 ActiveIntronRegion 0 9.11 10.96 8.82 12.11 14.13 27.94 14.36 5.98 3.82 2.82 11.57 2.14 0.00 14.73 19.01 11.05 1.98 4.76 21.06 11.54 0.21 5.49 10.57 39 E7_Aa NovelBoundary 0 34.52 20.98 59.55 45.88 39.73 48.44 17.89 29.82 28.59 15.96 7.48 0.00 0.00 17.13 33.62 27.26 0.00 32.13 38.78 22.95 0.00 5.51 22.02 40 ER7a ExonRegion 0 64.03 47.43 125.33 99.38 66.49 129.81 84.34 91.39 60.68 61.21 136.63 17.13 32.19 164.49 157.75 127.17 83.53 93.72 93.19 55.14 73.66 46.83 60.52 41 E7_Da NovelBoundary 0 9.26 6.45 15.26 11.22 27.16 19.70 20.54 10.47 13.05 6.74 12.63 0.00 0.00 9.59 10.75 16.24 17.20 6.63 20.05 5.56 0.00 7.96 4.01 42 E7a_E8a KnownJunction 0 120.10 51.90 123.38 126.86 101.78 144.06 119.42 84.37 72.19 61.22 157.83 18.16 27.27 174.29 135.11 154.66 62.74 103.59 126.03 74.78 64.56 48.68 80.92 43 E7a_E9a NovelJunction 0 10.22 8.68 26.11 29.47 20.20 21.81 35.33 11.75 18.46 8.70 13.90 12.15 20.13 53.92 18.54 25.81 30.11 10.53 29.08 2.88 7.66 3.12 11.61 44 I7 Intron 0 16.92 3.90 18.10 9.74 15.40 21.71 16.09 10.71 7.06 6.01 11.43 1.71 3.00 12.10 12.99 18.05 8.97 10.87 16.30 6.46 4.93 5.66 6.57 45 I7_SR1 SilentIntronRegion 0 17.02 3.93 18.21 9.80 15.50 21.84 16.19 10.78 7.11 6.05 11.51 1.71 3.02 12.17 13.06 18.16 9.03 10.93 16.39 6.50 4.96 5.70 6.61 46 E8_Aa NovelBoundary 0 31.19 12.04 9.34 1.73 33.28 19.19 16.12 12.82 12.93 9.97 7.16 6.30 0.00 9.42 19.41 8.12 14.31 22.76 0.00 14.06 2.97 12.43 7.34 47 ER8a ExonRegion 0 78.99 45.17 125.49 129.18 102.16 114.83 85.21 99.22 77.62 67.15 169.75 13.83 20.01 163.53 136.90 130.43 95.24 109.32 150.63 60.11 80.99 56.35 85.48 48 E8a_E9a KnownJunction 0 83.27 64.66 116.67 108.81 102.12 140.54 80.99 118.09 68.05 77.60 144.77 29.71 28.08 164.99 137.71 105.27 110.99 109.52 155.39 74.34 80.31 61.48 87.50 49 I8 Intron 0 12.30 4.84 7.00 4.29 10.61 14.54 12.94 5.79 4.13 4.29 7.66 1.41 0.62 12.11 6.94 8.25 4.36 9.59 5.89 6.75 2.91 5.51 3.10 50 I8_SR1 SilentIntronRegion 0 12.69 4.92 7.22 4.41 10.87 15.00 13.35 5.93 4.27 4.43 7.86 1.46 0.64 12.47 7.17 8.51 4.42 9.89 5.93 6.90 3.01 5.68 3.20 51 E9_Aa NovelBoundary 0 3.48 20.79 3.02 5.19 20.71 26.86 19.12 32.20 9.92 6.90 14.32 0.00 0.00 15.07 15.08 11.62 7.95 10.03 23.06 5.24 0.00 8.70 11.35 52 ER9a ExonRegion 0 75.37 61.48 144.52 136.69 81.37 141.62 96.78 102.58 71.96 67.75 145.20 22.44 16.69 200.76 188.78 159.33 98.28 132.64 148.12 72.01 74.47 68.87 100.41 53 E9a_E10a KnownJunction 0 62.97 64.33 134.62 163.12 86.08 99.32 122.77 98.21 80.00 59.31 137.82 18.76 6.82 219.85 224.37 184.14 96.87 117.73 104.29 75.93 83.21 69.01 102.52 54 ER10a ExonRegion 0 36.87 33.13 90.95 107.24 51.39 50.21 44.63 66.79 57.81 47.96 119.32 29.12 14.76 122.91 167.86 80.02 85.28 59.34 84.26 58.27 63.78 59.05 55.87 55 ER10b ExonRegion 0 1.41 2.03 1.23 2.27 2.68 0.00 2.65 1.73 6.18 0.76 10.95 1.44 4.69 5.96 5.80 1.98 9.90 0.00 6.37 2.84 0.00 0.00 2.94