Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NR4A1 Gene 0 76.59 27.22 418.12 36.86 30.90 28.06 35.78 81.98 181.65 66.96 21.54 9.87 5.81 22.49 18.64 10.19 13.01 54.89 62.66 24.95 395.29 952.95 1677.60 2 360284 Transcript 0 2.15 2.03 27.80 8.50 1.18 19.52 5.22 11.78 16.11 13.36 2.37 1.11 0.00 4.86 0.65 3.31 3.34 22.07 20.33 11.02 1.36 23.93 42.40 3 478250 Transcript 0 20.81 3.77 54.15 5.14 8.31 5.47 7.14 24.10 41.12 18.52 5.33 2.13 4.40 8.20 3.72 1.98 3.48 36.08 28.89 14.31 155.39 195.10 451.76 4 243050 Transcript 0 2.10 0.00 24.52 0.95 0.00 2.05 0.00 1.04 3.69 2.29 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.32 1.06 21.32 36.31 34.56 5 394825 Transcript 0 0.00 3.03 59.25 1.86 0.00 0.00 1.77 10.47 38.22 14.21 2.68 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 39.91 149.65 226.47 6 394824 Transcript 0 1.41 0.90 12.03 1.59 0.00 0.00 0.51 2.32 2.33 1.28 0.16 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.53 0.00 12.44 24.25 40.06 7 IG27_AR5 ActiveIntergenicRegion 0 0.00 2.38 4.14 2.83 2.08 2.14 1.55 1.00 0.72 3.33 1.51 0.00 0.00 1.76 0.00 1.16 2.57 5.12 11.16 6.63 0.86 8.11 15.58 8 IG27_SR5 SilentIntergenicRegion 0 0.60 1.10 1.07 0.73 0.00 1.04 1.45 0.73 0.10 1.34 0.00 0.00 0.00 0.28 0.00 0.00 0.00 1.48 0.94 2.62 0.00 1.18 11.84 9 IG27_AR6 ActiveIntergenicRegion 0 0.27 0.80 6.71 1.58 0.68 0.23 2.86 0.98 1.58 1.13 0.00 0.00 0.49 0.78 0.26 0.75 1.25 3.13 4.41 2.86 0.00 4.73 18.23 10 ER1a ExonRegion 0 0.00 0.00 2.63 0.41 0.00 0.09 0.70 0.00 1.51 0.00 0.10 0.00 0.00 0.04 0.00 0.00 0.00 1.48 2.87 1.76 0.00 8.18 5.43 11 E1_Da NovelBoundary 0 5.93 2.70 16.03 6.29 3.48 0.00 10.55 2.55 7.90 2.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.63 29.18 6.33 2.35 5.57 31.58 12 E1a_E2a KnownJunction 0 2.96 0.00 6.95 1.43 3.57 0.00 2.25 2.05 5.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 4.61 8.31 0.00 15.12 11.44 13 ER2a ExonRegion 0 2.82 5.37 43.99 10.20 1.14 21.56 9.14 18.75 22.70 21.41 3.99 4.44 0.00 9.88 2.61 4.53 4.76 44.25 38.46 17.54 3.05 48.22 72.66 14 E2_Da NovelBoundary 0 0.00 3.03 9.20 1.96 0.00 0.00 6.62 0.00 8.28 2.69 0.00 0.00 0.00 2.41 0.00 0.00 4.68 17.53 8.75 12.08 0.00 6.25 35.17 15 E2a_E6a KnownJunction 0 2.82 2.76 57.63 21.94 0.00 56.44 8.79 26.33 34.26 32.02 5.37 0.00 0.00 9.54 0.00 8.72 8.60 40.50 35.39 16.49 2.41 24.19 80.07 16 I2 Intron 0 2.26 1.89 15.44 2.54 1.91 3.40 5.34 3.86 8.86 2.80 1.52 1.76 1.50 6.47 2.43 4.24 3.53 19.22 10.68 7.13 1.65 13.23 54.26 17 I2_SR1 SilentIntronRegion 0 2.30 1.98 16.20 2.66 2.00 3.43 5.35 4.05 9.30 2.94 1.59 1.85 1.57 6.63 2.40 4.34 3.71 20.17 11.20 7.40 1.73 13.72 56.26 18 E3_Aa NovelBoundary 0 0.00 6.45 20.02 3.56 4.07 8.01 7.77 15.44 7.35 1.18 6.95 0.00 0.00 10.01 0.00 0.00 0.00 16.95 4.80 6.33 0.00 30.92 28.43 19 ER3a ExonRegion 0 1.37 1.68 17.62 2.06 4.17 6.52 2.69 12.73 6.62 6.68 2.97 0.98 4.08 12.77 3.20 1.64 2.94 29.77 20.09 17.41 1.85 24.27 63.03 20 E3a_E5a NovelJunction 0 0.00 2.83 0.00 0.00 0.00 0.00 0.00 6.49 4.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.06 0.00 3.26 0.00 3.12 19.38 21 E3a_E6a KnownJunction 0 6.37 0.00 24.95 5.96 6.79 2.21 2.12 22.51 18.29 6.07 5.26 0.00 8.12 6.95 4.45 0.00 3.55 51.03 38.97 18.92 2.97 41.39 95.09 22 ER4a ExonRegion 0 0.00 0.00 1.57 0.00 0.00 0.00 1.25 0.19 0.03 0.35 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.26 8.67 2.96 0.31 6.66 25.86 23 E4_Ab KnownBoundary 0 0.00 0.00 7.27 0.00 0.00 0.00 2.16 2.42 4.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.73 5.94 0.00 12.12 70.17 24 ER4b ExonRegion 0 89.62 5.76 221.71 16.74 27.08 16.20 25.81 35.82 134.47 44.08 20.74 1.44 1.56 5.19 14.74 9.62 12.02 21.15 74.93 3.48 443.87 827.54 3998.87 25 E4a_E5a KnownJunction 0 3.78 0.00 12.03 0.00 0.00 2.27 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.97 18.86 18.61 26 E4a_E6a KnownJunction 0 0.00 3.03 59.25 1.86 0.00 0.00 1.77 10.47 38.22 14.21 2.68 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 39.91 149.65 226.47 27 E4b_E5b KnownJunction 0 0.00 0.00 11.80 0.00 0.00 0.00 0.00 2.05 1.42 2.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.37 13.72 29.62 28 ER4c ExonRegion 0 2.12 0.00 18.99 0.00 0.00 0.00 0.00 1.73 3.71 0.00 0.48 0.00 0.00 3.25 0.00 0.00 0.00 0.00 1.59 0.00 31.95 53.13 74.88 29 I4 Intron 0 17.78 1.34 118.44 1.71 8.83 2.97 6.67 13.90 50.34 12.00 1.39 2.35 0.70 1.32 0.74 0.89 4.95 10.63 13.95 4.21 152.95 85.26 279.81 30 I4_AR1 ActiveIntronRegion 0 4.21 0.00 100.67 0.40 0.00 1.61 2.50 10.80 41.47 11.87 1.63 0.00 0.00 1.44 1.18 0.87 8.71 9.08 25.89 4.27 243.34 28.85 405.21 31 I4_SR1 SilentIntronRegion 0 15.05 1.05 63.79 1.30 8.77 1.61 7.44 9.01 39.00 9.13 1.20 0.72 0.00 1.90 1.12 0.99 3.79 12.63 8.27 3.06 85.94 51.67 199.83 32 I4_AR2 ActiveIntronRegion 0 22.56 1.83 151.91 2.24 11.03 4.03 7.31 17.28 58.64 13.58 1.44 3.79 1.23 0.99 0.44 0.85 4.68 10.00 14.11 4.82 166.92 116.88 292.65 33 E5_Aa NovelBoundary 0 33.64 3.35 98.46 3.76 0.00 0.00 0.00 16.31 35.99 10.34 4.95 0.00 0.00 4.94 0.00 0.00 4.77 6.55 0.00 8.56 103.97 42.62 129.58 34 E5_Ab NovelBoundary 0 10.89 0.00 159.69 1.96 7.98 0.00 5.79 10.23 31.65 4.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.96 0.00 5.75 94.03 48.93 110.89 35 ER5a ExonRegion 0 0.42 0.00 37.01 1.91 0.00 1.83 0.00 2.07 5.19 4.59 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.64 2.13 39.67 53.75 50.51 36 ER5b ExonRegion 0 29.85 2.73 297.93 5.35 6.70 0.25 8.99 26.55 78.48 28.59 4.00 0.00 0.00 3.39 0.00 1.05 2.41 21.22 25.77 15.79 258.26 382.22 748.97 37 E5_Da NovelBoundary 0 45.71 2.70 48.43 1.47 17.32 5.79 27.82 12.20 45.23 29.28 4.90 6.00 0.00 4.94 0.00 0.00 8.79 10.61 9.60 12.46 215.73 62.70 378.50 38 E5a_E6a KnownJunction 0 11.26 6.64 339.20 8.56 3.14 2.67 8.04 32.98 54.25 13.40 4.95 0.00 0.00 7.24 0.00 0.00 0.00 17.00 13.08 14.19 62.95 203.60 1114.24 39 I5 Intron 0 42.71 2.34 42.50 2.40 10.63 1.50 12.77 13.21 51.26 18.67 1.99 0.20 0.23 1.50 1.49 0.72 2.60 13.29 13.82 5.55 204.16 103.99 305.22 40 I5_AR1 ActiveIntronRegion 0 38.24 1.31 39.22 3.23 7.19 0.41 10.29 8.83 44.34 19.76 2.26 0.60 0.00 2.10 0.95 0.99 1.10 11.87 9.05 5.62 186.08 72.70 290.28 41 I5_SR1 SilentIntronRegion 0 45.41 7.06 45.23 3.42 6.52 1.10 11.22 13.73 52.62 18.79 1.90 0.00 0.00 0.24 2.90 2.32 0.60 8.50 13.67 5.53 199.42 71.07 297.88 42 I5_AR2 ActiveIntronRegion 0 46.58 1.90 41.27 2.14 14.78 0.88 15.55 12.08 54.05 17.74 2.12 0.00 0.50 1.99 1.50 0.99 2.72 15.51 14.82 4.78 209.42 114.42 321.48 43 I5_SR2 SilentIntronRegion 0 38.02 3.63 51.09 3.03 7.51 3.70 11.21 16.17 44.63 20.08 1.40 0.00 0.00 0.85 1.54 0.00 1.63 14.66 12.34 7.01 192.89 97.85 281.17 44 I5_AR3 ActiveIntronRegion 0 40.25 2.80 42.92 1.70 6.45 2.73 9.63 18.24 55.35 19.11 1.85 0.49 0.00 0.37 1.71 0.00 4.73 9.17 16.96 6.50 217.77 118.27 297.91 45 E6_Aa NovelBoundary 0 106.91 6.18 66.59 5.03 31.66 4.77 16.16 19.26 88.51 22.75 4.95 0.00 0.00 2.12 4.45 3.33 4.11 9.20 9.60 12.34 272.50 100.36 455.75 46 ER6a ExonRegion 0 57.73 21.56 509.81 37.26 25.89 33.62 33.95 99.08 242.45 84.53 30.10 12.99 9.35 32.10 21.86 16.07 15.01 80.10 93.23 34.07 485.44 1047.73 2025.47 47 E6_Da KnownBoundary 0 48.30 9.60 126.87 1.66 26.49 4.66 30.52 39.84 88.92 34.14 12.37 0.00 0.00 11.65 4.33 4.36 4.02 10.45 21.46 10.67 399.95 445.11 1189.36 48 E6a_E7a KnownJunction 0 27.56 47.23 637.26 53.91 47.37 35.89 29.59 109.22 209.89 57.75 39.17 0.00 0.00 44.26 18.17 31.53 13.37 80.01 154.64 30.81 57.89 1527.53 1615.16 49 ER6b ExonRegion 0 54.67 9.64 119.87 7.39 13.99 7.66 16.60 37.08 98.47 42.80 7.75 5.42 1.00 4.87 3.52 4.29 3.95 27.43 27.61 6.60 461.36 519.63 1197.16 50 E6_Db NovelBoundary 0 24.75 9.41 41.99 6.69 11.38 10.73 14.57 14.21 34.52 35.81 5.11 11.40 12.01 4.47 4.45 4.10 0.00 8.79 31.25 4.86 157.90 590.90 1249.63 51 E7_Aa NovelBoundary 0 66.53 8.75 97.75 10.75 30.39 2.90 14.57 12.12 34.46 13.94 0.00 6.30 0.00 7.95 0.00 4.36 0.00 17.78 14.02 5.88 210.35 213.34 678.21 52 ER7a ExonRegion 0 63.63 33.44 523.79 50.12 31.92 33.30 47.38 84.87 210.67 60.94 39.56 9.56 4.18 27.45 17.70 9.60 13.41 49.46 75.59 27.64 280.45 1167.70 1532.05 53 E7_Da NovelBoundary 0 23.12 3.09 73.68 0.00 15.53 0.00 1.68 8.42 42.77 12.87 2.63 0.00 0.00 0.00 0.00 0.00 4.02 6.43 3.58 0.00 173.97 33.31 132.74 54 E7a_E8a KnownJunction 0 33.41 36.77 612.90 56.44 8.15 65.36 36.88 88.06 221.55 62.32 41.38 24.16 13.64 14.83 23.36 4.27 25.62 55.22 52.24 52.41 152.78 1205.14 1618.31 55 I7 Intron 0 37.17 1.24 96.48 2.79 9.40 2.24 8.29 12.98 53.96 20.09 0.59 0.54 1.31 0.41 0.94 2.72 0.50 13.33 7.78 0.65 232.78 107.22 371.29 56 I7_AR1 ActiveIntronRegion 0 37.38 1.25 97.06 2.81 9.45 2.25 8.34 13.06 54.28 20.22 0.59 0.55 1.31 0.41 0.94 2.74 0.51 13.41 7.83 0.65 234.16 107.86 373.48 57 E8_Aa NovelBoundary 0 98.61 0.00 192.45 3.20 48.13 6.98 26.14 22.18 108.27 34.06 7.58 0.00 0.00 0.00 0.00 0.00 4.11 22.14 17.88 0.00 348.67 83.09 512.35 58 ER8a ExonRegion 0 79.98 38.41 644.50 71.02 38.08 50.55 51.46 97.56 239.77 70.84 33.33 9.68 5.09 33.78 27.10 15.17 22.02 77.03 89.76 35.78 416.81 1519.27 2160.96 59 E8_Da NovelBoundary 0 111.20 10.00 213.06 3.56 23.09 5.22 17.27 32.28 118.14 35.67 4.69 0.00 0.00 0.00 0.00 0.00 8.70 14.26 16.19 0.00 359.11 176.78 516.36 60 E8a_E9a KnownJunction 0 57.49 50.39 635.49 73.38 54.33 86.71 59.66 114.23 242.42 64.76 45.54 6.30 19.32 33.61 28.80 19.23 23.19 82.28 63.81 23.97 240.93 1338.63 2196.22 61 I8 Intron 0 48.86 2.18 57.19 1.45 21.54 1.97 11.13 10.60 30.64 9.79 2.08 0.00 0.69 1.20 1.40 0.00 2.95 7.56 5.70 3.05 144.28 88.00 233.87 62 I8_AR1 ActiveIntronRegion 0 49.19 2.19 57.54 1.46 21.69 1.98 11.21 10.66 30.83 9.86 2.08 0.00 0.70 1.21 1.41 0.00 2.97 7.61 5.74 3.07 145.28 88.60 235.48 63 E9_Aa NovelBoundary 0 112.54 6.05 243.49 10.72 34.80 0.00 44.60 41.48 134.43 39.73 2.37 0.00 0.00 2.41 0.00 0.00 3.93 38.80 7.81 2.68 316.86 150.21 520.20 64 ER9a ExonRegion 0 133.12 55.49 837.10 80.02 63.23 57.92 66.84 165.40 327.32 109.80 39.64 11.11 9.03 46.39 33.20 17.12 21.72 117.92 83.45 46.53 548.69 1743.05 2775.58 65 E9_Da NovelBoundary 0 100.24 0.00 126.81 1.56 11.54 0.00 7.73 39.14 93.37 25.60 2.26 0.00 0.00 0.00 0.00 0.00 4.30 12.35 8.85 0.00 189.22 79.24 173.46 66 E9a_E10a KnownJunction 0 92.61 55.65 718.84 90.90 34.55 47.08 40.14 87.94 240.56 88.64 30.32 6.30 25.65 45.74 25.22 4.36 23.19 83.90 55.53 46.66 401.86 1122.35 2272.02 67 I9 Intron 0 48.10 1.13 18.22 1.13 4.45 0.00 0.73 2.86 14.28 6.63 1.07 0.00 0.00 0.00 1.14 0.00 1.83 0.00 0.00 0.00 76.94 53.13 100.93 68 I9_AR1 ActiveIntronRegion 0 49.10 1.15 18.61 1.15 4.55 0.00 0.75 2.90 14.57 6.75 1.10 0.00 0.00 0.00 1.16 0.00 1.87 0.00 0.00 0.00 78.60 54.29 103.14 69 E10_Aa NovelBoundary 0 158.03 5.92 106.18 4.96 21.22 0.00 1.99 16.55 87.88 14.59 4.79 0.00 0.00 0.00 4.45 0.00 0.00 4.93 22.97 0.00 161.36 58.97 244.22 70 ER10a ExonRegion 0 187.13 57.18 714.01 54.45 46.01 53.30 74.08 115.26 237.49 92.44 28.54 14.75 10.48 31.15 31.44 17.07 19.97 74.77 61.55 46.49 516.75 1433.93 2231.85 71 E10_Da NovelBoundary 0 94.31 0.00 22.59 0.00 24.28 0.00 11.66 10.93 14.58 9.97 2.16 0.00 0.00 2.35 0.00 0.00 0.00 4.27 4.80 0.00 184.59 78.69 184.47 72 E10a_E11a KnownJunction 0 83.50 36.11 851.68 84.40 51.87 91.94 84.62 126.71 233.19 73.60 18.22 18.46 27.27 17.48 30.16 11.11 35.44 91.69 57.32 47.49 293.75 884.21 2114.61 73 I10 Intron 0 38.48 1.36 18.34 3.89 28.41 1.40 14.81 4.93 25.36 12.75 1.48 0.29 0.37 0.60 1.18 0.57 1.26 4.48 3.66 0.61 139.35 99.26 214.09 74 I10_AR1 ActiveIntronRegion 0 38.62 1.37 18.41 3.90 28.52 1.41 14.87 4.95 25.45 12.80 1.49 0.29 0.37 0.61 1.18 0.57 1.27 4.50 3.67 0.61 139.86 99.63 214.88 75 E11_Aa NovelBoundary 0 155.21 3.16 11.35 2.03 26.99 0.00 14.97 0.00 31.11 12.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 143.76 35.82 182.51 76 ER11a ExonRegion 0 123.15 52.68 612.03 65.30 57.98 38.74 56.31 125.00 238.41 92.66 26.45 16.32 8.60 30.35 33.22 10.87 20.80 54.43 74.59 29.91 393.85 1381.56 1881.47 77 ER11b ExonRegion 0 2.12 2.71 5.31 4.77 0.00 0.00 1.54 3.17 1.85 1.15 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.90 15.66