Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SLC11A2 Gene 0 78.84 68.11 59.42 98.80 75.50 89.84 128.22 73.05 61.32 70.57 46.84 43.60 51.21 51.30 50.40 32.07 39.63 76.30 56.94 74.70 55.32 121.91 160.14 2 394904 Transcript 0 2.42 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.99 3 262052 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 262051 Transcript 0 38.87 34.21 25.53 48.67 34.49 40.06 77.37 17.51 22.21 33.57 29.80 25.00 19.13 62.02 66.57 21.84 21.31 77.63 36.58 69.96 64.78 79.09 158.25 5 ER1a ExonRegion 0 1.73 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.40 6 E1a_E3a KnownJunction 0 3.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.59 7 ER2a ExonRegion 0 45.73 29.91 3.36 6.51 31.21 56.06 66.15 2.99 6.15 11.44 12.79 0.00 9.20 30.01 18.22 12.81 15.52 25.18 34.26 32.99 19.81 29.68 78.25 8 E2a_E3a KnownJunction 0 39.56 46.11 13.57 44.45 48.90 41.11 99.37 33.15 29.08 61.08 22.80 0.00 13.64 9.54 31.65 3.67 15.71 131.03 46.02 45.76 62.33 80.09 324.21 9 I2_AR4 ActiveIntronRegion 0 4.49 11.40 4.12 15.22 5.37 4.09 27.50 10.84 1.99 5.57 1.50 2.49 11.75 0.52 6.01 1.15 2.26 4.64 2.47 12.18 2.02 6.13 14.12 10 I2_AR5 ActiveIntronRegion 0 2.87 5.04 7.91 11.07 10.04 5.73 35.17 7.10 6.84 3.55 1.17 13.88 18.12 0.00 4.33 0.00 1.04 1.19 0.65 9.76 0.39 6.48 14.72 11 ER3a ExonRegion 0 16.58 23.05 11.18 22.85 28.84 19.79 63.40 17.72 17.77 23.46 18.90 14.55 31.20 10.15 17.21 2.06 16.37 43.42 12.96 40.10 37.37 59.58 129.13 12 E3a_E4a KnownJunction 0 6.52 6.58 16.50 21.28 4.07 5.05 34.01 22.67 11.98 22.43 18.43 18.61 6.82 19.31 14.83 0.00 16.18 13.02 7.34 53.18 31.14 28.78 31.84 13 I3_AR1 ActiveIntronRegion 0 19.75 12.74 6.96 12.67 9.73 14.50 34.17 11.12 6.42 1.59 2.71 10.06 11.18 0.38 6.65 4.81 6.54 9.51 5.77 9.52 0.87 3.38 18.48 14 E4_Aa NovelBoundary 0 13.04 11.45 8.75 24.14 19.95 10.96 85.81 15.69 14.84 6.53 0.00 13.95 13.47 2.18 13.35 0.00 3.93 2.11 4.42 14.57 0.00 4.71 4.01 15 ER4a ExonRegion 0 11.85 25.45 31.91 67.32 29.34 17.32 39.09 53.70 52.98 72.59 51.49 60.18 79.48 71.13 61.28 52.08 71.31 97.00 85.53 115.34 90.62 161.35 298.77 16 E4_Da NovelBoundary 1 0.00 9.47 8.46 38.39 12.90 25.44 28.66 34.42 29.75 27.67 24.85 12.15 78.89 19.42 33.62 12.22 25.81 8.21 18.26 32.47 16.68 42.31 65.30 17 E4a_E5a KnownJunction 0 3.70 31.70 41.90 98.26 69.19 57.13 61.96 46.41 42.74 68.69 36.43 12.60 42.37 49.62 35.60 19.57 34.41 121.71 45.84 121.95 65.61 88.42 315.93 18 I4 Intron 0 29.72 13.68 7.65 21.18 26.61 13.23 49.83 22.86 14.00 12.50 18.66 25.23 31.38 16.11 22.72 13.33 20.59 10.39 14.91 15.56 12.89 25.39 44.39 19 I4_AR1 ActiveIntronRegion 1 1.69 7.29 6.55 8.90 14.93 5.85 34.29 14.35 3.67 5.45 4.62 14.21 26.49 5.71 6.87 0.00 14.47 4.39 15.23 11.02 5.27 4.15 22.23 20 I4_AR3 ActiveIntronRegion 0 44.04 17.88 9.09 28.55 34.51 17.74 62.27 29.07 19.69 16.78 26.34 31.65 37.41 21.91 31.61 20.04 25.63 14.00 16.81 19.33 17.43 36.64 58.53 21 E5_Aa NovelBoundary 0 74.68 27.76 10.14 62.23 66.30 22.26 94.29 47.28 40.51 22.59 36.59 18.46 33.60 23.07 39.06 12.05 39.55 22.72 8.56 33.36 14.58 53.64 74.95 22 ER5a ExonRegion 0 37.12 62.85 49.59 87.11 79.81 124.83 155.82 71.94 67.77 83.01 65.06 85.46 54.34 92.91 61.13 42.86 52.29 119.62 59.23 122.85 95.63 165.89 235.02 23 E5_Da NovelBoundary 0 53.34 18.09 1.83 33.50 15.45 10.56 35.02 16.31 15.68 13.81 7.00 13.05 13.64 0.00 10.75 7.26 13.65 29.10 17.51 12.14 3.15 3.12 26.46 24 E5a_E6a KnownJunction 1 36.38 99.06 40.95 62.10 88.20 75.70 159.16 79.60 73.32 70.35 47.28 107.44 48.86 103.18 31.89 42.64 62.74 97.17 42.45 138.96 135.17 169.92 162.96 25 E6_Aa NovelBoundary 0 24.00 15.59 9.05 24.91 8.23 2.73 41.78 21.52 5.87 15.42 7.21 31.36 7.47 0.00 0.00 0.00 3.65 19.69 12.52 2.56 10.93 2.63 30.47 26 ER6a ExonRegion 0 42.45 54.62 42.55 80.88 58.96 53.76 105.97 63.84 65.35 86.70 62.43 62.56 65.07 94.01 72.56 45.57 60.52 105.58 69.92 114.02 101.22 149.77 188.56 27 E6_Da NovelBoundary 0 26.97 33.48 22.00 33.13 43.21 0.00 56.35 27.36 19.13 16.47 2.68 11.25 6.17 4.71 4.45 21.19 15.99 50.32 9.51 34.00 11.80 23.88 64.71 28 E6a_E7a KnownJunction 0 30.30 33.68 32.26 52.51 44.65 36.17 87.09 56.11 57.84 77.07 70.91 63.32 68.02 115.25 52.04 45.63 71.44 154.17 54.40 117.67 138.13 109.67 233.55 29 I6 Intron 0 17.49 15.49 12.06 20.82 16.90 6.02 25.76 15.90 11.49 13.51 3.70 7.53 8.35 2.80 8.38 7.83 7.03 13.83 5.86 13.44 6.28 7.90 24.80 30 I6_AR3 ActiveIntronRegion 0 19.80 18.87 16.87 26.88 19.80 6.96 27.77 21.07 14.81 17.48 4.02 6.81 11.97 3.33 12.39 9.78 8.23 14.02 7.65 15.18 7.45 8.90 35.30 31 I6_AR6 ActiveIntronRegion 0 17.02 14.85 10.43 16.46 19.43 6.70 25.19 17.42 11.88 13.96 4.65 10.82 5.94 3.95 5.11 7.66 4.48 18.31 4.75 13.48 4.75 9.95 16.85 32 I6_SR3 SilentIntronRegion 0 15.45 15.36 8.53 21.11 25.22 9.18 42.30 15.21 8.21 14.46 3.38 15.74 4.56 2.00 7.24 11.45 6.42 23.57 8.69 19.15 8.21 13.40 23.04 33 E7_Aa NovelBoundary 0 10.30 39.80 6.86 37.72 28.86 5.28 36.08 18.07 8.33 16.14 7.32 18.76 21.10 7.12 23.98 0.00 13.28 28.93 9.32 26.53 19.46 7.47 64.88 34 ER7a ExonRegion 0 39.76 57.68 39.20 90.57 40.81 63.51 102.08 101.69 76.91 104.00 83.10 73.03 77.36 94.09 69.11 73.78 62.81 144.19 83.71 127.18 114.82 211.27 280.63 35 E7_Da NovelBoundary 0 3.11 9.14 8.10 33.20 40.66 2.50 41.25 26.53 13.77 16.71 0.00 6.30 6.82 2.24 4.45 0.00 13.18 17.45 8.75 11.76 11.12 10.78 11.10 36 E7a_E8a KnownJunction 0 55.42 61.04 33.41 81.24 82.51 117.09 127.90 73.36 82.03 110.75 93.18 93.18 67.69 72.46 68.98 48.28 73.68 135.14 97.79 112.62 85.25 131.22 267.53 37 I7_SR2 SilentIntronRegion 0 18.01 18.72 6.91 25.99 24.51 3.58 26.16 20.73 12.42 17.63 1.83 7.22 10.22 1.23 8.43 8.88 7.23 6.22 9.34 13.86 3.43 14.93 25.44 38 E8_Aa NovelBoundary 0 10.74 21.05 8.69 21.74 3.23 7.84 48.49 24.44 20.80 9.62 6.69 7.20 0.00 0.00 5.81 3.93 22.53 13.06 8.85 2.68 8.22 5.02 29.11 39 ER8a ExonRegion 0 56.22 60.29 32.98 61.33 85.81 109.43 142.56 62.42 63.93 93.76 74.43 49.88 70.68 102.50 70.94 56.47 67.04 121.22 92.33 119.75 107.30 170.94 256.19 40 E8a_E9a KnownJunction 0 29.93 51.50 60.23 80.11 63.92 42.65 121.84 80.18 59.09 105.86 53.80 12.60 61.52 71.75 42.15 37.34 37.87 122.99 27.01 66.99 107.80 193.44 174.74 41 ER9a ExonRegion 0 87.68 87.47 48.94 95.96 127.22 108.09 218.08 94.05 91.60 102.31 97.64 54.76 96.56 135.73 114.90 73.56 80.29 153.55 104.13 139.27 124.77 273.80 374.25 42 E9a_E10a KnownJunction 0 88.83 107.74 66.50 117.60 193.04 129.41 222.80 108.97 122.19 115.40 76.28 82.23 143.98 114.19 155.76 87.67 76.39 145.92 71.34 169.89 87.66 248.79 378.24 43 E10_Aa NovelBoundary 0 6.37 9.47 2.84 32.26 3.99 0.00 16.34 15.77 3.96 13.14 2.05 0.00 18.67 2.47 4.45 10.68 9.26 14.96 4.71 21.35 0.00 0.00 21.51 44 ER10a ExonRegion 0 49.49 63.25 51.70 98.22 73.72 72.20 135.16 87.60 85.31 91.46 71.48 52.34 80.63 110.80 79.23 50.16 71.48 117.10 66.57 161.50 116.70 176.34 249.33 45 E10_Da NovelBoundary 0 7.19 14.73 18.39 38.96 17.06 6.81 34.49 39.80 15.42 30.57 9.63 25.21 33.76 9.89 14.83 15.81 3.93 42.12 29.74 35.86 21.07 12.74 27.74 46 E10a_E11a KnownJunction 0 66.60 64.79 49.08 73.02 108.23 123.28 143.93 78.94 73.32 99.20 64.07 42.16 89.93 140.62 105.20 62.72 77.61 112.01 66.64 163.88 89.33 168.39 327.62 47 I10 Intron 0 17.97 21.29 13.17 25.43 18.36 8.82 51.04 23.32 15.49 18.13 8.75 10.74 21.52 8.51 11.78 8.83 9.81 25.03 15.77 23.93 9.66 14.15 24.31 48 I10_SR1 SilentIntronRegion 0 15.35 15.54 8.58 20.89 17.48 8.38 55.93 21.20 11.99 15.92 9.69 8.16 29.52 9.76 10.51 7.67 7.48 22.19 15.22 21.13 10.19 12.92 21.72 49 I10_AR1 ActiveIntronRegion 0 21.08 28.03 18.55 30.81 19.48 9.38 45.72 25.90 19.63 20.79 7.72 13.77 12.43 7.12 13.32 10.22 12.55 28.46 16.51 27.30 9.12 15.65 27.43 50 E11_Aa NovelBoundary 0 24.82 45.19 28.95 53.17 21.14 7.78 39.22 20.50 27.86 11.74 20.11 31.06 40.58 15.48 19.16 0.00 8.88 20.93 9.51 24.16 22.67 0.00 45.07 51 ER11a ExonRegion 0 81.19 99.95 42.20 110.00 107.01 128.72 185.03 78.77 96.22 95.07 79.87 53.72 90.03 116.18 99.21 53.67 76.92 118.45 80.60 146.73 102.24 204.68 304.32 52 E11_Da NovelBoundary 0 3.63 29.99 24.13 42.42 23.94 14.03 37.76 33.23 29.77 20.74 7.48 24.91 32.47 9.83 13.35 7.35 4.77 41.00 17.88 24.29 14.15 5.02 35.94 53 E11a_E12a KnownJunction 0 65.27 75.97 43.49 92.33 85.99 142.47 133.24 48.80 72.83 99.52 60.02 50.12 59.57 108.25 74.17 36.74 64.80 103.26 35.86 105.14 62.64 197.42 253.78 54 I11 Intron 0 11.73 18.57 12.47 28.19 18.66 11.74 37.10 21.13 13.78 18.57 7.50 10.63 15.76 7.34 6.72 12.81 14.48 33.26 21.10 25.84 12.19 14.22 49.16 55 I11_AR1 ActiveIntronRegion 0 11.76 18.62 12.51 28.27 18.71 11.77 37.20 21.18 13.82 18.63 7.52 10.66 15.81 7.36 6.74 12.85 14.52 33.35 21.15 25.91 12.23 14.26 49.30 56 E12_Aa NovelBoundary 0 20.15 12.70 16.88 37.22 36.67 10.05 59.27 17.58 14.53 13.75 12.16 12.00 20.29 2.47 16.81 11.11 8.79 29.43 26.92 9.40 22.55 0.00 19.38 57 ER12a ExonRegion 0 50.94 60.00 45.48 107.17 55.85 79.55 122.79 63.83 88.39 108.76 52.41 53.70 89.43 102.41 89.81 39.22 68.22 70.70 62.28 145.83 87.59 197.05 278.85 58 E12a_E13a KnownJunction 1 36.08 64.92 45.74 102.08 55.35 79.56 147.99 101.58 96.24 102.91 47.33 70.67 113.79 105.01 95.56 44.35 56.76 97.42 98.26 173.47 100.20 180.76 273.59 59 ER13a ExonRegion 0 69.49 77.51 53.45 108.26 66.07 124.94 157.55 99.88 91.42 102.83 68.18 58.66 62.06 113.40 86.09 61.89 71.16 205.15 81.17 144.98 121.92 172.01 340.06 60 E13a_E14a KnownJunction 0 81.87 119.19 70.31 117.63 109.51 130.61 231.81 108.44 93.23 103.15 83.07 19.51 67.85 112.54 123.74 64.34 84.81 218.75 76.99 156.60 125.10 181.13 360.23 61 ER14a ExonRegion 0 93.41 82.21 61.72 122.97 102.89 143.29 160.12 103.11 100.20 101.76 92.55 48.23 39.49 115.63 104.23 63.43 85.36 235.64 103.27 146.28 131.83 167.97 347.62 62 E14a_E15a KnownJunction 1 200.55 120.70 59.61 166.21 139.05 174.16 230.40 133.90 135.91 125.53 138.09 127.99 32.95 121.37 149.95 76.90 111.45 312.56 174.78 176.22 157.04 215.91 481.19 63 ER15a ExonRegion 0 88.66 91.54 56.40 120.97 92.57 128.42 153.58 90.72 97.94 100.04 93.75 39.78 53.24 106.45 108.84 66.67 95.01 212.89 115.84 140.45 130.67 155.56 344.30 64 E15a_E16a KnownJunction 0 131.95 110.57 59.90 122.30 84.30 151.56 190.52 76.03 93.66 91.73 90.08 42.76 26.30 92.53 105.20 43.66 62.37 167.60 130.07 143.94 131.77 174.03 246.87 65 ER16a ExonRegion 0 105.17 86.82 67.50 124.77 118.13 136.27 168.57 80.18 107.84 117.54 93.33 60.64 36.55 107.21 103.30 60.70 74.48 188.27 124.62 151.74 131.79 185.92 290.25 66 E16a_E17a KnownJunction 0 148.84 100.25 58.37 122.60 111.63 122.43 154.17 69.78 114.70 106.62 107.71 58.22 52.92 87.94 100.87 83.31 61.15 178.04 129.79 142.85 119.79 210.83 290.83 67 I16_AR1 ActiveIntronRegion 0 2.08 0.00 0.00 2.54 3.55 0.00 3.56 0.00 1.12 1.10 0.71 3.16 7.49 3.53 11.83 2.46 2.79 3.27 2.70 1.10 3.69 0.00 13.67 68 ER17a ExonRegion 0 126.13 98.18 66.24 146.89 130.67 104.59 146.03 72.47 101.23 113.27 78.71 30.31 70.96 87.01 95.96 67.81 50.98 173.65 94.85 145.74 107.70 179.41 278.76 69 E17_Da KnownBoundary 0 107.13 94.79 50.65 110.88 83.02 59.51 87.49 55.98 69.94 78.33 25.80 12.15 58.60 43.26 29.42 37.00 20.94 75.40 50.92 78.87 33.30 86.40 111.23 70 E17a_E18a KnownJunction 0 35.27 32.03 35.10 65.53 49.32 46.90 91.33 26.49 26.22 44.24 35.48 31.51 6.82 71.46 78.87 26.49 21.88 87.47 42.17 69.22 74.81 92.59 170.04 71 ER17b ExonRegion 0 94.60 71.90 72.82 108.01 78.48 91.03 129.80 76.39 52.24 60.09 31.88 38.80 44.46 19.76 30.12 18.65 21.86 34.43 41.58 37.03 20.90 92.63 82.76 72 I17_AR2 ActiveIntronRegion 0 2.76 5.44 1.20 16.75 7.10 1.97 15.83 0.97 5.55 4.85 1.34 6.30 20.68 1.62 2.47 0.69 2.30 0.57 2.37 10.43 0.00 3.32 5.58 73 E18_Aa NovelBoundary 1 6.52 11.71 1.60 17.01 6.96 7.10 14.49 5.09 12.38 4.65 1.95 27.61 13.80 0.00 9.52 3.67 0.00 6.34 3.76 9.14 2.41 2.51 0.00 74 ER18a ExonRegion 0 42.47 36.40 15.96 31.82 19.66 33.22 63.41 8.53 18.21 22.89 24.11 18.48 31.45 52.58 54.27 17.18 20.74 67.80 31.00 70.70 54.75 65.60 146.46 75 IG9 Intergenic 0 23.66 26.32 14.70 33.80 38.18 22.28 47.67 20.42 18.49 23.34 7.75 24.99 29.20 11.82 17.80 5.35 6.74 11.49 13.33 27.78 7.14 48.64 38.90 76 IG9_AR6 ActiveIntergenicRegion 0 66.08 74.80 41.82 94.30 106.58 71.85 124.67 52.42 52.20 64.73 26.01 76.01 84.15 37.96 54.77 13.87 19.17 33.59 38.90 70.87 24.30 164.90 121.49 77 IG9_SR5 SilentIntergenicRegion 0 31.99 51.13 40.26 58.64 61.41 35.76 56.84 40.85 39.70 45.17 10.18 71.14 49.19 19.96 25.71 16.51 9.20 27.73 30.66 43.27 6.80 102.77 85.88 78 IG9_AR5 ActiveIntergenicRegion 0 61.73 40.91 31.58 55.35 54.31 12.48 38.75 19.74 18.25 25.69 4.96 8.14 17.26 12.71 17.13 7.68 7.41 23.86 17.73 29.55 17.48 47.79 59.31 79 IG9_SR4 SilentIntergenicRegion 0 3.57 7.97 2.68 8.52 14.09 4.88 23.85 6.70 5.31 8.59 1.91 5.52 8.58 3.50 4.12 2.48 0.70 4.09 1.60 15.70 1.05 5.55 8.87 80 IG9_AR4 ActiveIntergenicRegion 0 2.82 6.04 0.79 5.95 7.95 0.94 22.28 4.04 7.21 3.03 0.25 5.76 14.03 2.61 5.30 1.85 3.82 2.08 1.13 9.63 0.88 3.26 5.74 81 IG9_SR3 SilentIntergenicRegion 0 3.40 3.01 1.35 6.57 8.42 5.36 18.80 7.26 5.11 6.75 1.33 5.12 8.70 1.54 2.94 1.72 3.91 2.25 4.59 13.05 0.44 4.53 6.72 82 IG9_AR3 ActiveIntergenicRegion 0 11.02 11.95 4.10 18.09 18.34 6.69 27.60 14.86 5.07 12.10 1.98 5.05 11.66 3.10 7.98 2.67 3.28 1.28 2.34 15.22 0.00 4.09 5.09 83 IG9_SR2 SilentIntergenicRegion 0 8.64 7.43 3.06 10.25 12.01 2.73 19.19 7.41 6.95 6.26 1.31 5.77 7.58 2.17 4.81 0.93 0.00 1.71 2.77 9.77 0.52 3.74 4.14 84 IG9_AR1 ActiveIntergenicRegion 0 5.20 10.76 4.19 10.57 12.72 3.38 16.48 6.02 1.43 5.77 0.00 2.48 9.87 0.22 2.52 0.00 0.00 0.31 0.51 3.51 0.00 1.75 1.86