Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF641 Gene 0 2.76 4.77 3.82 6.85 8.20 12.37 5.59 10.98 9.45 18.28 6.96 6.00 5.83 11.50 3.01 8.93 9.71 7.04 2.38 9.45 2.53 5.77 4.61 2 301042 Transcript 0 4.99 15.58 12.47 14.46 21.25 26.56 12.97 37.73 40.72 77.22 29.96 19.84 11.66 38.16 8.94 36.18 35.19 13.50 9.09 20.51 4.34 21.03 13.64 3 448928 Transcript 0 0.02 1.48 3.14 3.41 1.91 5.07 8.03 5.56 6.73 9.85 7.24 0.00 0.00 8.73 2.79 4.81 3.30 2.58 1.62 9.06 0.55 6.04 5.50 4 IG29_AR1 ActiveIntergenicRegion 0 3.48 4.46 1.00 0.00 10.27 2.01 2.18 0.00 0.00 0.00 6.36 0.00 0.00 10.58 5.15 1.63 18.10 0.00 1.75 4.67 2.42 3.43 6.44 5 ER1a ExonRegion 0 0.74 0.14 0.39 0.00 0.38 0.64 0.56 1.25 1.43 1.20 1.90 0.50 0.00 3.71 0.29 1.88 1.97 0.34 0.00 1.05 0.62 0.59 1.86 6 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 2.07 0.00 0.00 0.00 0.00 0.00 7 ER2a ExonRegion 0 6.41 6.48 10.67 10.15 8.73 12.64 8.65 28.57 25.32 52.64 24.42 7.31 11.53 27.23 11.62 21.32 35.22 22.37 3.89 38.06 8.98 14.00 16.38 8 E2a_E3a KnownJunction 0 3.78 0.00 16.47 25.07 12.56 29.64 17.00 32.78 45.77 85.04 29.06 25.36 26.30 42.44 15.20 18.54 31.42 17.99 0.00 58.04 8.71 22.04 15.11 9 ER3a ExonRegion 0 3.06 5.55 6.93 20.56 21.61 45.13 13.18 46.20 41.30 84.35 29.88 18.26 22.79 41.89 14.63 34.24 29.31 21.13 17.10 33.67 8.62 22.28 7.66 10 E3_Da KnownBoundary 0 0.00 0.00 0.00 6.86 0.00 0.00 14.31 7.68 12.41 16.57 2.37 0.00 0.00 9.48 0.00 4.19 0.00 4.15 12.71 17.51 0.00 16.72 8.02 11 E3a_E4a KnownJunction 0 0.00 8.68 6.45 4.69 14.94 34.58 11.92 46.82 46.79 73.71 33.48 6.30 6.82 26.66 9.52 12.48 25.43 17.49 14.12 16.55 5.87 14.88 3.50 12 E3a_E5a NovelJunction 0 0.00 9.67 1.30 3.33 4.07 6.64 5.83 4.44 8.19 9.80 9.84 0.00 0.00 2.94 0.00 12.48 9.07 7.54 0.00 6.52 2.47 8.70 0.00 13 ER3b ExonRegion 0 0.04 2.96 3.26 6.81 3.82 10.15 9.92 6.88 10.30 15.22 6.79 0.00 0.00 12.52 5.58 2.28 6.60 2.96 3.25 18.12 1.09 9.63 7.07 14 E3_Db NovelBoundary 0 3.04 6.58 0.00 2.06 7.72 8.63 10.29 7.35 12.04 7.23 2.53 0.00 6.82 9.59 4.45 3.59 4.77 0.00 0.00 5.11 5.68 0.00 0.00 15 E3b_E5a KnownJunction 0 0.00 0.00 3.02 0.00 0.00 0.00 6.14 4.23 3.15 4.49 7.69 0.00 0.00 4.94 0.00 7.35 0.00 2.20 0.00 0.00 0.00 2.45 3.93 16 I3 Intron 0 11.73 5.06 1.65 8.96 19.97 15.14 16.47 10.49 8.74 13.93 6.12 9.94 20.56 9.68 1.52 3.02 7.47 3.02 1.80 10.83 0.00 5.42 5.65 17 I3_SR1 SilentIntronRegion 0 12.48 5.38 1.76 9.53 21.24 16.10 17.52 11.15 9.30 14.81 6.51 10.57 21.87 10.30 1.62 3.22 7.94 3.21 1.92 11.52 0.00 5.76 6.00 18 E4_Aa NovelBoundary 0 17.41 0.00 3.10 20.24 28.01 16.41 20.40 15.73 13.19 21.54 10.32 12.30 13.64 14.83 0.00 8.72 4.02 6.72 4.24 2.88 0.00 7.78 4.01 19 ER4a ExonRegion 0 4.44 8.51 12.62 16.61 13.58 22.54 12.35 30.23 36.47 65.53 25.59 11.06 14.54 39.72 8.39 29.84 46.19 11.44 4.88 22.54 4.68 14.23 12.33 20 E4_Da NovelBoundary 0 17.63 0.00 2.25 14.92 23.51 11.36 20.31 11.42 28.30 15.79 12.16 0.00 6.66 14.77 4.45 19.23 24.40 6.59 0.00 16.30 0.00 0.00 7.51 21 E4a_E5a KnownJunction 0 10.52 29.53 18.33 22.08 35.23 22.54 14.62 36.15 38.89 92.43 30.80 42.16 13.64 48.09 8.90 66.22 33.94 11.57 8.28 22.43 2.47 33.98 25.10 22 I4 Intron 0 7.25 4.23 3.13 6.71 25.53 14.35 12.63 7.56 11.71 12.96 6.86 11.65 14.91 10.90 3.69 5.82 7.27 6.63 0.78 11.19 1.08 2.80 7.18 23 I4_SR1 SilentIntronRegion 0 8.51 4.38 3.67 7.86 28.44 16.85 13.50 8.88 13.75 15.22 7.78 12.66 16.37 12.64 4.05 5.98 7.59 7.78 0.92 13.14 0.95 3.29 8.44 24 E5_Aa NovelBoundary 0 16.67 5.46 4.73 12.15 37.78 19.48 12.94 33.19 15.86 7.68 6.53 6.15 0.00 7.42 8.90 16.32 8.42 0.00 0.00 18.86 0.00 0.00 7.85 25 ER5a ExonRegion 0 20.09 35.53 24.25 39.76 53.05 58.42 26.56 61.50 55.93 97.31 40.78 30.08 46.24 76.68 10.79 55.14 63.38 31.85 21.93 50.41 11.79 32.86 28.75 26 E5_Da NovelBoundary 0 2.82 0.00 1.57 9.19 3.48 0.00 6.67 2.14 1.71 4.81 0.00 0.00 6.33 7.00 15.20 6.75 0.00 2.20 0.00 0.00 0.00 2.82 16.48 27 E5a_E6a KnownJunction 0 18.15 37.89 25.46 71.45 65.20 95.68 21.64 59.72 67.65 106.40 60.91 39.01 53.08 76.23 8.90 39.90 44.04 35.86 0.00 62.06 2.41 25.29 3.33 28 E6_Aa NovelBoundary 0 0.00 3.22 0.00 4.59 0.00 10.90 16.52 4.48 1.22 0.00 2.32 12.00 6.82 4.89 0.00 8.46 9.54 6.88 0.00 0.00 0.00 3.12 3.59 29 ER6a ExonRegion 0 2.41 4.53 3.08 6.30 7.92 12.12 5.20 8.85 6.87 13.92 4.64 5.95 4.81 8.27 2.25 6.96 6.36 6.32 1.67 6.84 2.05 4.64 3.29 30 IG28 Intergenic 0 14.49 7.19 4.42 12.89 19.86 9.82 7.10 24.33 15.51 20.09 8.48 8.88 13.54 7.83 7.24 6.75 6.03 4.15 0.54 10.52 1.27 5.87 6.30 31 IG28_AR3 ActiveIntergenicRegion 0 32.35 15.31 9.71 25.58 40.89 21.88 14.91 47.96 32.17 42.62 18.20 19.23 29.00 17.04 15.51 14.66 13.27 8.68 1.27 21.98 2.69 12.09 14.03