Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LASS5 Gene 0 131.95 309.31 104.57 134.54 156.65 122.99 146.40 119.53 121.98 137.44 66.23 50.32 74.79 72.04 63.02 87.12 59.05 102.78 99.50 110.31 94.38 169.48 99.87 2 380189 Transcript 0 38.01 60.65 23.24 32.36 43.38 51.73 37.01 44.11 47.02 16.76 12.27 0.00 6.82 12.01 4.45 0.00 17.02 41.49 17.60 10.74 24.15 23.51 16.30 3 438450 Transcript 0 0.00 0.00 0.00 2.03 0.00 0.00 0.00 2.14 0.00 1.34 0.00 0.00 0.00 4.77 0.00 0.00 0.00 2.57 14.40 0.00 0.00 6.12 0.00 4 317551 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 422340 Transcript 0 8.47 10.17 4.00 3.02 5.00 9.09 4.26 2.40 2.04 3.74 4.37 7.15 5.71 5.01 5.17 3.10 0.72 13.26 3.46 7.40 2.01 11.50 4.34 6 ER1a ExonRegion 0 16.37 38.42 32.68 25.39 38.14 56.92 47.67 43.14 47.08 67.61 33.04 3.78 9.81 37.89 30.39 69.06 44.78 44.57 67.97 54.97 67.16 82.36 77.72 7 E1_Da NovelBoundary 0 0.00 6.18 12.57 10.16 0.00 2.90 4.33 4.35 6.48 18.56 7.21 0.00 14.12 7.95 14.83 17.26 7.57 28.81 14.40 29.72 14.09 0.00 31.33 8 E1a_E3a KnownJunction 1 16.45 56.04 63.42 70.29 31.24 38.10 29.37 113.24 96.61 142.34 41.91 31.66 26.78 87.76 100.50 181.23 57.88 186.04 219.02 66.41 106.13 264.47 290.58 9 E1a_E4a KnownJunction 0 0.00 0.00 0.00 2.03 0.00 0.00 0.00 2.14 0.00 1.34 0.00 0.00 0.00 4.77 0.00 0.00 0.00 2.57 14.40 0.00 0.00 6.12 0.00 10 I1 Intron 1 28.83 60.53 34.97 46.25 69.74 24.95 76.68 32.40 38.46 38.08 8.31 25.78 37.69 7.04 21.90 22.00 20.77 22.32 21.90 64.93 9.24 19.87 32.51 11 I1_AR1 ActiveIntronRegion 1 15.20 30.21 30.83 36.89 56.63 34.23 59.89 28.82 34.64 42.61 6.80 11.67 23.13 8.25 26.17 34.59 27.53 53.16 36.92 74.78 23.25 10.33 41.42 12 I1_AR2 ActiveIntronRegion 1 13.79 22.24 37.35 40.27 55.15 5.80 19.56 29.33 41.28 58.09 3.99 3.77 24.36 4.98 29.20 43.05 32.90 51.68 59.91 86.34 34.12 12.77 50.96 13 I1_AR3 ActiveIntronRegion 1 10.58 34.32 29.72 43.61 46.49 3.67 32.93 29.38 39.99 51.04 5.07 4.33 35.18 8.12 25.02 40.50 23.11 58.67 55.74 76.33 30.30 8.07 56.16 14 I1_AR4 ActiveIntronRegion 0 10.94 41.35 35.13 49.06 41.92 6.11 32.00 29.67 39.73 48.93 4.83 7.22 34.39 12.72 24.66 40.62 21.46 62.21 57.87 79.08 22.77 7.64 59.22 15 I1_SR1 SilentIntronRegion 1 21.97 34.85 34.79 40.56 42.95 30.72 70.85 29.27 30.92 34.78 5.49 12.73 26.63 7.58 25.13 30.50 17.06 40.96 35.90 76.70 16.14 15.64 50.37 16 I1_AR5 ActiveIntronRegion 1 44.58 83.56 38.69 59.18 91.32 26.21 79.13 24.70 38.22 45.83 14.18 33.42 35.96 7.53 32.69 24.31 21.85 26.60 28.90 77.52 6.91 20.84 35.82 17 I1_SR2 SilentIntronRegion 1 34.66 89.05 42.71 55.32 68.39 21.85 71.06 30.72 33.52 31.26 8.16 27.63 39.68 5.71 23.43 24.28 20.59 21.72 25.16 54.99 8.86 16.78 28.70 18 I1_AR6 ActiveIntronRegion 0 21.23 56.70 44.38 48.33 123.74 29.93 97.46 25.85 31.91 36.31 7.23 14.46 36.30 6.61 17.18 27.28 20.20 20.63 18.41 63.65 10.12 14.52 40.94 19 I1_SR3 SilentIntronRegion 1 27.35 58.83 43.13 46.94 75.67 21.85 79.55 32.27 41.82 38.83 6.45 20.39 41.01 5.49 19.65 23.15 18.96 25.60 23.44 53.45 7.51 16.90 36.57 20 I1_AR7 ActiveIntronRegion 1 22.68 63.16 53.24 61.44 86.29 24.47 105.48 42.18 43.64 39.09 8.62 21.39 29.83 4.79 21.37 24.08 21.98 20.86 15.26 88.41 7.76 15.64 31.31 21 I1_SR4 SilentIntronRegion 1 19.78 45.14 24.79 37.09 55.13 19.21 69.54 26.07 30.25 27.46 6.71 22.73 22.28 3.56 19.58 14.15 18.13 14.25 13.74 61.00 5.91 12.53 25.89 22 I1_AR10 ActiveIntronRegion 0 1.35 8.69 8.47 5.20 11.19 0.00 16.13 6.13 10.55 13.87 1.76 10.63 18.33 0.59 9.76 0.00 4.50 4.87 3.76 21.66 4.21 9.85 9.61 23 I1_AR11 ActiveIntronRegion 1 56.90 71.33 43.73 62.42 101.40 27.59 117.96 66.28 64.50 68.94 13.17 75.99 91.25 13.59 29.59 31.99 31.32 25.16 29.88 113.73 13.34 31.29 33.80 24 I1_SR9 SilentIntronRegion 0 12.54 32.09 15.79 25.18 42.78 20.39 38.04 28.82 28.96 27.09 5.92 27.08 26.75 12.18 18.50 14.53 8.97 11.04 14.93 43.20 5.16 29.41 31.64 25 I1_AR14 ActiveIntronRegion 0 32.60 68.96 32.60 50.83 52.52 31.25 73.55 36.44 53.56 44.56 13.10 33.16 48.62 12.85 22.85 19.13 24.62 22.58 20.98 88.21 12.16 34.22 38.40 26 I1_SR10 SilentIntronRegion 0 36.51 71.29 34.74 57.28 75.66 39.55 110.75 42.54 57.95 50.26 10.71 26.77 52.11 11.44 20.84 19.37 26.65 15.76 20.33 79.39 8.85 36.76 31.74 27 I1_AR15 ActiveIntronRegion 1 56.68 112.83 35.31 64.94 100.01 42.79 108.86 51.53 52.66 58.66 13.64 40.29 52.63 7.88 26.63 16.62 29.43 9.44 14.64 71.67 7.59 50.28 34.97 28 I1_SR11 SilentIntronRegion 0 14.82 26.13 9.93 16.01 21.00 21.27 42.17 16.25 13.28 9.12 3.77 2.60 7.97 1.62 3.77 4.31 2.97 3.05 8.44 14.04 1.43 5.00 4.85 29 ER2a ExonRegion 0 8.47 10.17 4.00 3.02 5.00 9.09 4.26 2.40 2.04 3.74 4.37 7.15 5.71 5.01 5.17 3.10 0.72 13.26 3.46 7.40 2.01 11.50 4.34 30 I2 Intron 1 16.47 30.83 19.82 34.11 52.06 25.17 40.13 20.05 33.93 24.50 7.13 12.21 22.43 4.81 17.41 15.83 20.96 9.23 11.09 63.62 3.61 26.46 19.25 31 I2_SR1 SilentIntronRegion 1 20.31 38.00 24.43 42.05 64.18 31.02 49.47 24.71 41.82 30.21 8.78 15.05 27.65 5.93 20.42 19.51 25.84 11.38 13.67 78.43 4.45 32.61 23.73 32 E3_Aa NovelBoundary 0 249.75 153.06 35.98 58.30 120.54 78.48 110.80 78.04 76.10 66.21 12.79 25.96 32.30 27.14 28.56 68.96 23.47 37.23 41.70 78.55 11.68 94.12 13.06 33 ER3a ExonRegion 0 84.26 223.71 104.93 109.51 151.81 161.55 140.31 172.05 159.88 182.97 87.82 53.83 69.60 114.49 61.67 130.86 85.08 188.24 127.53 153.97 148.96 249.08 158.02 34 E3_Da NovelBoundary 0 20.97 31.31 11.00 42.49 43.38 24.87 33.92 37.83 31.31 17.41 2.21 0.00 13.47 2.83 11.00 4.10 0.00 12.27 4.80 8.44 2.90 5.27 8.28 35 E3a_E4a KnownJunction 1 130.54 387.17 108.28 106.58 211.04 316.75 358.87 189.56 203.85 195.45 113.87 62.87 123.69 172.41 53.16 89.89 60.59 122.00 106.73 192.01 164.64 235.26 125.40 36 I3 Intron 0 14.57 31.70 11.21 35.86 32.62 11.86 23.61 11.50 22.42 22.67 6.57 7.03 6.95 4.74 7.78 10.35 6.84 13.78 16.11 13.58 7.31 15.20 15.10 37 I3_AR1 ActiveIntronRegion 0 14.62 31.80 11.24 35.98 32.73 11.90 23.68 11.54 22.50 22.74 6.59 7.06 6.96 4.75 7.81 10.39 6.87 13.83 16.17 13.62 7.33 15.25 15.15 38 E4_Aa NovelBoundary 0 49.56 67.88 16.59 42.05 39.39 0.00 27.29 21.15 28.73 24.95 2.47 6.30 6.82 12.18 13.35 0.00 3.55 25.58 53.65 21.67 24.34 20.45 16.56 39 ER4a ExonRegion 0 142.26 431.07 171.26 220.11 287.33 265.37 282.41 269.77 253.05 282.73 133.33 96.57 109.91 132.76 93.99 174.22 109.96 227.33 161.02 215.70 201.63 352.04 158.56 40 E4a_E5a KnownJunction 0 127.87 323.17 149.58 228.51 275.98 143.50 246.74 206.89 267.65 283.77 128.66 74.42 110.71 142.86 88.26 144.32 86.49 126.85 179.02 207.60 181.50 415.22 112.51 41 E4a_E6a KnownJunction 0 38.01 60.65 23.24 32.36 43.38 51.73 37.01 44.11 47.02 16.76 12.27 0.00 6.82 12.01 4.45 0.00 17.02 41.49 17.60 10.74 24.15 23.51 16.30 42 I4 Intron 0 19.04 13.95 6.54 32.51 19.18 7.55 25.43 12.37 9.96 14.20 2.21 7.30 8.58 2.66 8.08 7.70 5.03 7.92 6.56 12.33 2.69 4.29 10.97 43 I4_AR1 ActiveIntronRegion 0 24.06 18.11 5.03 44.64 18.43 7.61 30.12 18.22 12.60 16.83 1.37 13.58 9.30 2.80 10.25 8.37 8.80 10.79 9.42 14.49 2.10 4.01 14.71 44 E5_Aa NovelBoundary 0 13.71 2.43 9.99 19.71 47.62 8.18 14.93 17.29 6.37 10.34 2.37 0.00 12.82 0.00 0.00 8.72 20.94 4.02 0.00 5.82 0.00 3.12 26.55 45 ER5a ExonRegion 0 124.91 370.95 184.40 282.00 342.31 214.21 253.65 254.02 281.29 317.26 162.26 141.01 163.50 181.93 103.44 121.09 115.30 172.48 180.30 208.03 149.02 430.43 173.41 46 E5a_E6a KnownJunction 0 279.01 556.81 215.13 331.23 472.24 264.96 304.99 294.34 253.93 324.57 173.25 154.85 199.34 186.42 132.15 141.76 134.08 171.00 221.47 252.35 188.67 478.05 234.15 47 E5a_E8a NovelJunction 0 14.15 9.93 5.77 5.53 0.00 5.39 0.00 4.27 1.59 4.41 7.63 0.00 0.00 4.47 0.00 0.00 18.70 2.07 13.27 2.62 6.24 3.12 0.00 48 I5_AR1 ActiveIntronRegion 0 1.95 10.49 3.42 9.54 15.42 4.44 9.86 9.78 1.37 2.60 3.97 5.35 23.94 2.56 6.80 7.20 3.13 0.39 4.36 5.82 1.97 2.08 8.50 49 E6_Aa NovelBoundary 1 20.97 15.72 5.17 34.93 40.15 28.96 42.22 21.03 18.14 10.99 2.32 24.91 6.82 0.00 4.45 43.66 4.11 12.15 37.08 20.90 15.07 16.90 19.63 50 ER6a ExonRegion 0 282.45 594.88 205.19 314.80 315.27 223.54 247.84 343.42 298.73 328.44 157.32 87.61 149.16 153.18 141.71 181.42 114.43 239.05 168.20 246.31 186.75 378.22 185.76 51 E6_Da NovelBoundary 0 13.85 15.98 18.66 36.66 39.47 26.01 65.14 16.31 16.96 17.68 2.63 0.00 13.47 7.42 18.30 35.63 23.09 17.82 50.45 30.87 6.05 0.00 16.48 52 E6a_E7a KnownJunction 0 294.87 747.76 188.99 279.65 291.26 189.27 251.46 306.29 282.81 291.26 128.87 79.83 205.99 147.92 126.96 191.83 119.87 186.54 137.70 267.69 127.01 311.62 153.91 53 I6 Intron 0 20.80 19.84 7.20 32.04 23.15 13.19 29.50 11.41 12.48 14.78 3.88 3.07 10.65 3.09 6.08 10.49 8.91 10.12 9.48 14.87 3.96 4.18 12.40 54 I6_AR1 ActiveIntronRegion 0 22.87 23.68 7.39 29.68 25.51 13.72 34.28 11.87 12.01 12.41 4.28 1.99 11.07 2.23 6.63 10.15 9.77 10.85 8.65 11.81 3.54 4.28 13.34 55 I6_SR1 SilentIntronRegion 0 17.29 13.05 6.96 36.89 19.13 12.39 21.10 10.74 13.54 19.40 3.20 5.10 10.04 4.75 5.16 11.28 7.40 8.92 11.15 20.74 4.81 4.05 10.84 56 E7_Aa NovelBoundary 0 21.71 10.06 10.56 31.30 8.49 38.10 74.68 8.26 14.93 17.25 7.32 11.85 0.00 2.41 4.45 7.69 0.00 14.38 18.45 26.65 3.15 3.12 12.38 57 ER7a ExonRegion 0 284.48 901.12 194.25 330.59 400.90 290.04 343.58 298.35 353.31 327.64 170.55 166.66 198.65 135.50 127.69 181.65 127.46 143.93 189.55 252.53 128.76 373.62 183.15 58 E7_Da NovelBoundary 0 22.97 6.18 17.92 50.14 22.50 11.41 33.30 17.83 9.92 15.31 9.37 6.60 14.28 2.24 13.60 23.75 28.70 8.33 27.58 14.25 3.03 6.12 8.45 59 E7a_E8a KnownJunction 0 511.72 1552.68 228.38 329.03 584.97 402.38 505.93 305.47 325.03 322.56 182.57 102.63 196.58 169.35 178.38 122.19 129.50 134.43 172.52 251.13 192.31 378.79 181.65 60 E8_Aa NovelBoundary 1 24.75 14.67 8.93 25.64 17.32 9.54 21.99 5.91 4.17 25.01 0.00 25.21 0.00 6.71 14.83 15.12 11.87 6.92 8.38 6.52 0.00 17.70 16.65 61 ER8a ExonRegion 0 332.06 1149.11 249.21 357.69 453.34 277.57 361.82 292.85 325.28 302.67 147.36 154.05 245.37 137.61 154.26 169.66 110.59 169.33 201.69 259.47 158.19 388.28 201.22 62 E8_Da NovelBoundary 0 14.15 29.27 24.01 35.03 3.57 5.79 21.15 10.93 10.04 10.13 0.00 6.30 0.00 0.00 4.45 33.07 4.02 22.84 18.35 12.53 0.00 15.25 15.62 63 E8a_E9a KnownJunction 0 272.86 773.15 317.26 459.48 481.58 307.27 327.69 332.49 367.27 376.55 133.09 157.40 251.12 137.85 132.77 179.35 133.52 170.25 237.47 280.40 210.66 363.11 219.64 64 E9_Aa NovelBoundary 0 49.79 58.15 24.78 79.91 50.00 33.73 76.09 33.80 44.65 23.80 4.63 11.40 20.45 2.47 30.16 7.43 11.50 27.90 8.28 40.46 5.37 5.69 4.01 65 ER9a ExonRegion 0 265.81 649.83 324.06 465.75 429.74 295.77 386.45 315.94 349.05 352.98 138.70 134.17 217.63 171.00 179.44 209.94 137.93 204.12 268.49 316.11 252.03 430.68 244.32 66 E9_Da NovelBoundary 1 54.90 167.60 39.29 113.27 98.64 37.19 98.75 82.52 84.98 33.71 1.95 0.00 34.09 2.47 18.54 21.45 17.95 24.58 15.81 52.80 6.30 9.19 31.50 67 E9a_E10a KnownJunction 0 508.39 1318.71 302.38 466.81 769.10 472.57 693.27 286.98 170.80 340.85 148.30 163.55 229.21 175.29 170.96 251.64 132.40 217.80 329.61 261.68 241.80 517.36 318.49 68 I9 Intron 0 24.35 62.53 20.87 41.30 56.34 28.95 41.68 59.32 70.66 23.76 5.56 11.13 19.01 5.87 13.83 11.93 13.24 24.20 13.20 21.19 10.17 9.75 17.30 69 I9_AR1 ActiveIntronRegion 0 27.63 105.93 32.49 57.45 63.57 36.39 41.53 83.00 108.62 34.45 7.80 15.29 26.35 8.04 21.47 21.96 24.25 36.90 18.03 31.02 15.02 10.62 20.39 70 I9_SR1 SilentIntronRegion 0 19.79 27.30 13.21 28.69 52.44 24.45 38.49 48.45 49.27 18.15 4.78 7.47 16.50 5.10 9.69 4.51 5.31 12.87 10.09 16.42 6.77 9.83 14.06 71 I9_AR2 ActiveIntronRegion 0 26.15 36.32 10.61 30.90 48.89 21.85 48.52 29.76 30.39 11.71 2.28 9.23 8.27 2.77 5.38 4.52 4.65 18.49 8.84 9.32 6.26 7.87 16.98 72 E10_Aa NovelBoundary 0 55.64 72.62 21.50 31.26 63.24 41.96 54.23 57.91 62.21 29.09 0.00 0.00 19.80 2.47 8.90 12.22 4.21 32.17 8.56 22.12 2.35 10.78 11.61 73 ER10a ExonRegion 0 373.15 876.77 235.84 274.30 370.53 263.45 309.61 201.95 192.16 244.16 124.63 89.79 173.08 153.29 142.96 172.59 129.16 231.79 202.95 209.07 210.49 258.45 210.76 74 E10_Da NovelBoundary 0 58.31 68.74 36.78 51.24 50.93 8.23 49.51 66.70 49.45 41.29 7.00 0.00 21.59 19.37 10.51 11.79 30.57 32.08 9.60 19.24 9.14 24.74 31.16 75 E10a_E11a KnownJunction 0 371.55 290.61 213.45 152.73 140.83 101.19 205.05 103.14 45.49 143.34 120.40 48.62 100.64 159.22 125.35 118.94 86.58 181.98 213.28 95.11 202.94 247.51 178.41 76 I10 Intron 0 44.87 110.08 41.31 97.59 134.50 77.35 76.00 96.64 109.95 55.91 13.59 21.28 21.97 16.94 19.73 25.34 20.32 31.12 21.82 35.80 12.84 19.05 28.56 77 I10_AR1 ActiveIntronRegion 0 16.38 36.76 21.81 32.12 32.82 21.90 38.89 26.61 17.23 16.55 4.99 9.45 10.51 8.54 5.40 16.31 11.72 31.70 20.56 23.35 10.67 6.73 28.44 78 I10_AR2 ActiveIntronRegion 0 58.27 179.63 58.22 148.05 215.88 124.58 106.47 156.24 187.41 87.57 16.32 27.35 25.51 20.74 23.96 31.32 22.24 39.58 22.04 49.47 15.53 21.88 32.15 79 I10_SR2 SilentIntronRegion 0 40.44 34.79 26.45 51.09 53.24 28.89 50.16 35.32 27.86 25.04 14.61 17.73 23.79 16.45 20.91 22.98 24.11 21.82 26.13 22.77 11.34 22.38 27.74 80 E11_Aa NovelBoundary 0 120.10 31.57 57.54 122.43 53.06 31.97 63.29 46.04 32.06 40.08 16.53 18.76 17.69 22.19 44.50 36.14 13.09 28.93 12.80 52.80 31.01 34.54 20.40 81 ER11a ExonRegion 0 59.97 37.97 25.85 20.66 13.30 20.41 35.05 10.68 6.91 20.79 10.76 4.60 7.41 14.36 13.40 15.66 9.75 30.86 25.22 13.57 19.67 30.62 21.51