Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ETNK1 Gene 0 87.20 266.15 96.31 140.03 239.88 241.84 197.10 165.23 185.63 169.72 125.72 244.38 159.83 148.01 153.87 124.43 144.76 37.23 36.79 92.36 24.77 115.47 46.98 2 381409 Transcript 0 0.00 1.02 0.25 0.02 0.57 0.02 0.56 0.09 0.67 0.01 0.10 0.06 0.89 0.87 0.02 0.01 0.77 1.14 0.01 1.79 0.03 1.28 1.42 3 335148 Transcript 0 0.79 3.54 7.61 0.75 1.66 0.00 3.43 4.30 0.46 2.10 9.98 18.51 10.50 5.78 11.76 2.60 10.01 3.32 0.44 11.10 2.56 5.59 2.94 4 266517 Transcript 0 102.04 233.37 82.90 115.32 223.22 226.85 214.75 155.62 197.74 171.97 177.87 346.44 189.53 178.55 230.24 190.74 246.23 50.12 34.00 94.66 51.33 152.68 53.99 5 ER1a ExonRegion 0 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 6 E1_Ab KnownBoundary 0 0.00 0.00 1.57 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1b ExonRegion 1 6.89 19.68 12.07 9.79 8.83 57.81 30.57 11.57 25.26 23.91 68.37 12.48 15.30 120.37 84.96 110.58 142.01 57.66 18.44 46.33 45.24 24.03 50.06 8 E1a_E2a KnownJunction 1 3.56 71.37 32.38 27.80 16.38 139.24 93.49 55.08 70.86 45.42 149.20 29.86 28.24 245.34 145.00 148.76 270.03 72.13 32.94 97.09 84.26 68.70 83.57 9 I1_AR3 ActiveIntronRegion 0 5.60 8.26 4.49 16.55 12.71 0.00 16.69 3.67 4.22 4.44 3.18 25.89 38.11 0.00 6.41 2.54 5.64 3.12 4.71 9.04 0.00 0.00 0.00 10 ER2a ExonRegion 0 13.90 63.04 41.82 42.44 48.85 58.90 73.48 76.87 114.24 87.07 191.17 173.89 123.02 306.46 161.30 235.80 336.35 76.62 45.31 112.81 80.84 84.63 82.21 11 E2a_E3a KnownJunction 0 0.00 3.35 5.68 0.00 0.00 0.00 0.00 2.30 0.00 0.00 11.90 18.16 0.00 2.47 13.35 0.00 3.46 4.19 0.00 8.44 3.15 5.82 0.00 12 E2a_E4a KnownJunction 0 22.00 76.63 38.70 46.91 60.78 71.10 126.70 70.69 146.53 109.87 241.59 388.48 212.97 293.07 158.97 260.53 435.25 71.84 42.26 83.28 62.27 83.40 95.69 13 ER3a ExonRegion 0 1.58 3.73 9.55 1.50 3.33 0.00 6.87 6.30 0.92 4.21 8.06 18.86 21.00 9.09 10.18 5.19 16.55 2.45 0.89 13.76 1.97 5.36 5.87 14 I3 Intron 0 6.51 11.80 5.89 11.28 11.08 3.36 16.32 8.67 6.94 5.83 3.89 20.01 27.24 2.33 5.89 7.25 12.02 5.13 4.65 18.72 1.93 2.72 6.41 15 I3_AR2 ActiveIntronRegion 0 8.79 21.92 14.20 25.70 13.52 4.38 17.56 18.76 9.18 9.28 3.38 27.29 28.83 1.83 11.16 5.87 4.04 4.43 2.23 21.43 0.27 4.37 4.67 16 I3_AR3 ActiveIntronRegion 0 19.48 21.97 7.30 20.73 25.48 6.10 33.49 10.10 9.63 11.19 3.46 21.03 37.73 1.90 10.68 12.15 20.91 5.62 10.04 29.03 3.34 2.30 9.10 17 I3_AR4 ActiveIntronRegion 1 27.28 22.43 14.29 47.85 39.27 8.46 37.28 16.98 12.05 23.84 6.77 33.24 60.97 0.81 11.37 15.77 20.55 7.51 8.12 24.54 5.33 2.39 11.94 18 I3_AR5 ActiveIntronRegion 0 29.10 28.47 7.35 34.98 28.99 3.51 34.64 17.14 10.09 14.05 3.22 19.12 37.52 0.00 18.86 6.19 20.63 7.39 10.09 28.01 2.20 2.08 12.97 19 I3_SR3 SilentIntronRegion 0 14.31 21.55 11.31 20.61 23.12 8.13 25.07 14.95 10.32 8.51 4.79 18.58 29.79 4.28 9.90 12.31 18.21 13.41 10.37 23.62 5.13 5.38 12.60 20 E4_Aa NovelBoundary 0 26.82 57.42 20.40 32.83 22.92 18.23 29.94 11.17 14.99 10.99 9.11 0.00 0.00 4.94 0.00 14.53 12.90 7.34 7.81 37.71 0.00 5.02 8.45 21 ER4a ExonRegion 0 56.76 92.91 35.77 50.42 79.13 96.53 133.12 66.22 145.11 97.25 254.27 282.12 178.69 337.51 178.62 247.23 411.35 80.76 50.63 127.99 69.97 85.34 112.43 22 E4_Da NovelBoundary 0 66.83 29.01 22.03 37.49 33.87 4.77 45.75 17.54 8.42 14.02 7.05 36.46 59.90 7.48 9.27 6.75 17.30 18.03 11.48 36.75 0.00 5.45 31.41 23 E4a_E5a KnownJunction 1 27.12 31.84 34.92 42.15 101.87 101.02 168.17 65.72 138.83 76.96 217.00 229.42 167.52 294.07 114.47 242.67 294.34 35.73 8.94 74.02 37.81 89.77 64.71 24 I4 Intron 0 53.87 48.60 26.10 36.87 43.01 6.11 24.03 26.78 11.42 16.75 3.96 19.13 30.35 3.81 21.81 9.03 10.57 13.03 10.62 19.67 2.04 6.19 5.33 25 I4_SR1 SilentIntronRegion 0 78.47 55.74 31.89 39.92 62.09 8.42 29.12 25.30 10.00 15.28 5.39 19.04 29.18 4.42 24.43 10.76 8.64 13.87 14.40 20.83 2.58 6.37 7.19 26 I4_AR1 ActiveIntronRegion 1 49.73 40.33 26.62 45.48 36.15 4.17 23.37 36.92 15.04 22.03 2.85 17.71 34.97 3.92 25.47 9.71 17.69 18.25 9.70 21.65 1.73 5.70 4.43 27 ER5a ExonRegion 0 36.11 95.81 28.77 43.82 73.33 83.11 143.16 76.22 134.20 85.06 210.46 297.70 216.23 260.99 156.28 163.22 298.23 58.25 32.30 101.46 49.81 75.33 74.22 28 E5_Da NovelBoundary 1 32.97 77.82 17.36 55.90 52.97 2.44 63.95 51.79 38.02 37.66 16.21 143.15 111.36 34.02 59.21 11.45 49.84 7.25 13.27 54.27 8.15 40.97 20.49 29 E5a_E6a KnownJunction 0 28.45 30.52 24.19 17.58 42.95 93.87 86.69 79.36 126.88 63.29 161.20 208.72 93.99 205.66 132.89 107.75 248.99 7.01 43.48 52.28 23.66 64.17 27.40 30 I5 Intron 0 12.16 33.86 8.50 21.20 20.60 9.91 36.41 20.92 18.35 21.62 28.91 141.36 156.47 45.27 23.93 42.68 44.51 12.56 6.92 41.04 8.68 36.53 18.57 31 I5_SR1 SilentIntronRegion 1 28.75 66.59 22.37 45.45 36.80 9.87 57.40 50.61 29.12 39.69 20.24 157.23 166.41 45.50 44.63 42.00 49.91 10.26 8.01 36.96 6.32 27.73 17.00 32 I5_AR2 ActiveIntronRegion 1 4.82 39.93 3.63 17.79 14.16 5.44 33.71 16.54 12.04 18.94 17.44 167.04 202.41 42.17 15.39 23.86 33.21 7.27 5.70 43.65 3.29 18.64 10.85 33 I5_SR2 SilentIntronRegion 1 0.00 0.00 0.00 0.00 2.73 3.48 8.63 0.00 0.00 0.00 3.52 41.56 79.36 17.61 8.53 8.86 2.71 0.00 0.00 14.89 0.00 18.38 3.00 34 I5_AR3 ActiveIntronRegion 1 2.85 13.91 5.34 22.11 9.15 5.59 23.52 16.33 25.99 31.97 18.85 161.62 215.83 46.48 20.01 36.52 32.91 9.97 3.51 56.76 5.80 37.87 16.52 35 I5_SR3 SilentIntronRegion 1 2.21 21.89 3.53 15.06 16.11 4.68 30.22 14.17 20.25 19.68 30.11 196.98 198.50 47.10 14.28 45.21 47.36 12.29 5.74 51.01 9.90 30.75 21.63 36 I5_AR5 ActiveIntronRegion 1 5.11 18.01 3.89 9.06 9.85 7.89 31.48 9.53 15.43 19.75 31.35 133.91 175.87 49.21 16.90 60.60 61.44 21.43 6.37 61.68 16.29 31.28 33.29 37 I5_AR6 ActiveIntronRegion 1 4.23 4.36 6.13 8.76 5.35 5.50 27.24 10.12 21.17 34.57 62.41 210.91 239.19 68.91 11.61 81.52 146.18 41.97 14.11 97.57 58.24 31.55 37.34 38 I5_AR7 ActiveIntronRegion 1 2.76 9.21 7.73 13.82 20.86 6.44 23.34 11.18 14.09 26.80 57.75 142.43 217.18 83.03 12.14 69.75 95.52 50.00 13.26 71.73 48.89 38.86 47.83 39 I5_SR4 SilentIntronRegion 1 7.84 25.72 5.71 18.73 18.17 8.88 49.56 17.76 19.93 22.04 62.79 132.38 215.18 73.27 21.98 102.49 77.57 58.15 16.28 71.49 26.64 42.25 52.23 40 I5_AR8 ActiveIntronRegion 1 4.48 17.78 3.90 9.07 11.56 5.38 27.02 9.24 10.95 11.58 29.32 170.86 178.42 47.01 12.09 35.93 28.11 11.55 4.74 40.96 6.47 39.35 17.52 41 I5_SR5 SilentIntronRegion 0 4.70 20.99 3.63 9.97 9.43 8.63 25.25 7.06 10.27 9.15 31.55 108.23 103.41 50.34 17.25 57.21 51.92 14.22 4.75 44.47 10.71 39.03 19.87 42 I5_AR9 ActiveIntronRegion 1 5.53 27.59 2.04 12.36 14.73 8.47 25.99 10.37 15.12 16.30 28.43 116.85 89.87 45.75 15.73 41.54 41.81 7.74 7.28 43.58 4.98 52.30 17.38 43 I5_SR6 SilentIntronRegion 0 10.90 34.48 3.14 13.16 23.52 10.93 25.75 8.08 10.67 12.06 34.87 145.86 117.58 50.80 24.73 49.51 51.87 16.57 4.91 35.39 11.23 43.83 17.73 44 I5_AR10 ActiveIntronRegion 0 11.15 20.99 3.00 10.61 11.35 6.36 27.49 13.24 17.14 15.09 34.13 131.61 137.97 36.66 17.62 43.94 40.49 10.02 5.64 35.16 9.89 51.46 16.28 45 I5_SR7 SilentIntronRegion 0 6.51 12.17 3.94 7.64 13.12 14.00 24.53 10.34 10.46 11.29 27.13 90.98 128.14 36.50 20.75 30.92 24.46 7.84 7.29 19.79 7.91 41.81 13.74 46 I5_AR11 ActiveIntronRegion 0 11.93 19.28 6.22 18.39 30.45 12.05 39.19 23.38 19.89 25.48 39.99 111.69 156.41 49.92 23.80 37.45 56.46 7.90 7.88 32.28 11.86 65.91 17.49 47 I5_AR12 ActiveIntronRegion 0 15.42 43.13 12.19 31.08 33.14 25.09 47.83 23.48 24.21 21.37 38.40 97.18 121.80 42.32 28.13 38.52 44.82 9.90 10.50 35.89 7.01 43.17 17.09 48 I5_SR8 SilentIntronRegion 0 35.78 65.70 19.68 31.06 29.54 34.42 62.33 27.39 19.81 22.89 45.72 113.32 101.29 35.54 35.88 36.01 71.16 13.25 12.01 23.24 7.50 46.00 19.09 49 I5_AR13 ActiveIntronRegion 0 33.76 31.79 16.04 20.90 30.88 20.97 34.85 17.04 14.38 16.94 33.36 106.93 76.03 34.39 29.59 45.45 52.78 8.97 8.04 29.22 10.29 32.42 16.35 50 E6_Aa NovelBoundary 1 16.37 45.91 24.04 41.69 51.19 52.98 71.28 19.76 27.17 16.98 28.85 67.67 136.52 59.51 53.16 47.00 62.74 10.20 0.00 25.50 16.31 21.37 43.79 51 ER6a ExonRegion 0 62.46 62.51 30.47 45.28 67.44 132.38 136.01 63.97 131.64 78.07 226.98 406.04 199.88 252.74 166.17 175.36 274.76 43.20 33.90 83.49 43.97 126.25 48.11 52 E6a_E7a KnownJunction 0 107.65 69.79 36.69 44.52 125.04 222.20 187.21 62.10 128.50 76.93 254.17 414.44 273.03 236.57 190.99 234.13 247.59 79.34 40.94 118.37 36.88 121.85 56.43 53 ER7a ExonRegion 0 76.04 79.79 39.35 43.52 104.65 125.55 147.37 88.25 137.81 94.97 243.07 380.72 209.71 265.31 212.57 226.93 305.47 66.40 31.06 90.78 66.93 133.32 69.68 54 E7a_E8a KnownJunction 0 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 55 E7a_E9a KnownJunction 0 89.87 102.15 36.49 41.29 122.16 132.82 179.17 95.25 165.85 127.00 232.95 436.94 221.09 227.32 297.79 261.81 365.50 65.66 24.28 86.10 83.46 177.52 62.06 56 I7_AR2 ActiveIntronRegion 0 4.85 4.66 4.45 6.98 7.92 0.32 10.67 8.81 2.65 5.34 5.70 9.50 14.01 5.39 5.05 11.61 9.33 14.44 1.82 8.91 4.59 4.13 5.14 57 ER8a ExonRegion 0 0.00 1.45 0.00 0.07 2.27 0.09 2.24 0.35 0.88 0.06 0.39 0.22 3.58 3.47 0.10 0.05 3.08 4.54 0.05 5.55 0.11 2.30 1.34 58 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.82 0.00 59 ER9a ExonRegion 0 78.71 82.63 32.37 50.30 122.65 115.38 150.41 63.00 139.27 108.10 215.83 383.51 174.36 236.97 218.22 264.00 265.50 60.50 32.80 76.42 51.94 124.22 61.99 60 E9a_E10a KnownJunction 0 72.24 90.44 49.11 66.43 126.23 196.08 216.66 67.90 130.58 96.25 218.21 363.27 158.11 217.26 226.47 220.88 285.27 56.42 31.62 62.89 43.00 169.74 65.81 61 ER10a ExonRegion 1 45.29 109.70 42.27 68.81 123.24 118.16 123.42 102.37 139.09 114.01 124.24 343.81 290.62 186.12 171.72 108.83 119.33 24.37 17.12 73.54 14.45 151.48 36.18 62 E10_Da KnownBoundary 1 9.78 175.36 18.01 44.15 60.70 71.55 95.70 45.35 93.63 94.72 33.01 288.24 320.27 112.07 44.13 40.07 14.68 2.11 0.00 52.22 0.00 86.22 15.79 63 ER10b ExonRegion 0 114.22 364.60 129.32 189.36 324.29 320.88 250.33 215.98 229.63 216.93 122.78 255.95 157.97 129.77 162.69 119.67 126.97 34.58 43.71 103.23 19.19 127.85 45.92