Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TMEM106C Gene 0 128.36 146.94 182.60 182.07 162.36 367.26 166.62 108.17 86.22 141.19 407.60 218.51 82.19 329.73 221.38 219.63 251.74 217.09 149.59 157.49 58.32 77.68 66.61 2 256686 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 449758 Transcript 0 67.49 65.45 63.27 49.01 131.75 224.70 114.16 57.01 41.70 52.19 270.96 198.81 107.95 203.66 127.08 106.47 159.61 77.35 89.88 31.51 61.34 41.39 23.13 4 434888 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 429772 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 424902 Transcript 0 0.02 0.03 0.04 0.02 0.02 0.07 0.10 0.00 0.00 0.03 0.10 0.00 0.00 0.08 0.17 0.04 0.10 0.00 0.05 0.05 0.00 0.00 0.00 7 ER1a ExonRegion 0 37.64 30.01 20.27 10.57 17.59 122.49 44.56 8.66 7.17 11.96 68.41 0.00 0.00 34.05 42.49 40.04 45.07 46.47 12.60 30.81 15.12 7.74 12.35 8 E1_Da KnownBoundary 0 0.00 6.25 2.45 0.00 3.65 11.92 5.48 1.56 2.58 0.00 0.00 0.00 0.00 2.47 0.00 0.00 3.83 5.31 4.52 2.62 0.00 0.00 0.00 9 E1a_E3a KnownJunction 1 272.12 190.43 109.19 57.90 167.06 856.50 321.99 55.74 35.18 71.08 390.63 0.00 0.00 195.42 317.70 254.29 252.73 243.50 118.50 190.09 81.48 52.91 91.00 10 ER1b ExonRegion 0 20.81 33.34 13.55 13.55 18.92 104.73 47.51 16.63 12.35 16.11 60.19 0.00 0.00 53.82 60.89 38.34 53.47 66.78 53.34 55.23 4.44 4.37 2.11 11 E1b_E3a KnownJunction 0 15.63 10.66 21.70 19.01 10.87 38.95 7.73 23.82 15.45 31.05 28.22 5.55 0.00 4.94 14.71 49.05 26.55 96.34 26.82 36.43 2.53 0.00 0.00 12 ER2a ExonRegion 0 0.03 0.06 0.07 0.04 0.04 0.13 0.19 0.00 0.00 0.05 0.20 0.00 0.00 0.17 0.34 0.09 0.19 0.00 0.09 0.09 0.00 0.00 0.00 13 E2a_E5c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER3a ExonRegion 1 116.21 101.39 111.30 77.11 84.52 374.97 167.85 63.99 56.79 91.71 271.17 25.94 9.77 136.37 122.21 179.97 196.42 263.40 97.67 140.17 57.03 36.88 60.08 15 E3_Da KnownBoundary 1 17.34 15.19 71.29 40.62 11.80 75.64 23.67 38.24 34.14 62.96 265.33 59.57 27.11 133.85 113.11 32.04 212.81 48.62 64.28 111.34 46.52 11.39 15.54 16 E3a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER3b ExonRegion 1 47.17 52.65 147.25 112.36 36.37 114.39 35.10 97.85 83.85 135.45 533.87 114.93 51.81 312.09 241.77 238.93 339.29 273.54 157.62 223.72 87.80 61.75 71.54 18 E3b_E4a KnownJunction 1 56.90 63.87 173.06 246.72 78.35 154.23 79.89 116.61 88.45 158.11 377.25 181.11 59.90 349.05 404.72 517.47 227.68 462.21 250.08 226.71 47.07 148.86 203.25 19 E3b_E9a NovelJunction 0 2.74 15.33 35.51 5.33 0.00 0.00 3.58 0.00 5.56 4.78 6.84 0.00 0.00 11.36 9.64 17.26 4.77 93.93 41.51 24.54 0.00 0.00 3.93 20 I3_AR1 ActiveIntronRegion 0 1.90 12.46 13.04 9.01 9.91 21.24 20.14 9.03 19.69 12.30 17.86 19.22 8.97 20.92 2.38 17.42 13.33 25.25 1.79 27.51 0.00 0.78 2.20 21 ER4a ExonRegion 0 74.77 88.68 179.34 210.50 151.97 289.00 107.80 101.17 87.23 136.45 478.12 163.84 60.60 344.26 234.46 365.48 289.86 436.68 222.73 199.87 69.14 109.65 140.22 22 E4_Da NovelBoundary 0 16.82 61.24 41.51 43.28 33.11 122.09 56.48 11.62 21.90 23.83 37.48 24.61 26.78 49.74 0.00 11.02 20.94 65.83 3.95 33.30 2.72 0.00 0.00 23 E4a_E5a KnownJunction 0 180.62 104.52 196.12 210.96 307.81 511.01 194.85 98.66 88.43 143.77 511.60 293.20 75.16 385.60 247.11 171.92 305.19 299.21 213.94 151.68 85.50 115.18 85.11 24 I4 Intron 0 29.18 44.06 25.75 45.05 39.94 89.15 42.68 24.03 27.47 28.52 48.29 35.32 22.03 44.84 7.94 37.28 33.87 51.55 12.88 39.04 5.02 5.62 4.87 25 I4_AR1 ActiveIntronRegion 0 29.30 44.23 25.85 45.24 40.10 89.52 42.84 24.12 27.59 28.64 48.48 35.47 22.12 45.02 7.98 37.42 34.01 51.76 12.94 39.20 5.04 5.64 4.89 26 E5_Aa NovelBoundary 0 72.16 63.15 54.20 59.83 45.08 118.17 54.23 32.33 32.67 24.50 61.38 50.12 39.12 61.16 24.85 61.78 33.10 66.04 21.74 43.34 2.97 0.00 3.50 27 ER5a ExonRegion 0 150.37 130.10 214.88 198.95 212.21 564.55 237.34 93.50 89.87 163.90 503.84 280.08 101.17 386.62 229.82 196.23 293.39 226.61 167.31 195.74 74.40 109.73 70.27 28 E5_Ab KnownBoundary 1 106.61 97.61 147.84 132.08 146.86 381.31 181.51 64.16 54.98 98.45 285.39 63.77 74.02 175.76 81.59 139.62 139.32 142.77 88.94 149.76 37.99 58.23 35.08 29 E5_Ac KnownBoundary 0 69.57 112.09 111.79 113.17 141.26 384.04 151.43 47.32 57.61 92.86 229.64 63.62 15.26 157.81 91.35 97.92 191.68 79.38 59.20 128.03 30.27 31.78 30.39 30 ER5b ExonRegion 0 126.39 169.95 255.23 207.94 214.06 679.82 295.05 103.21 99.34 185.47 531.27 260.39 107.20 406.73 228.37 228.85 332.92 169.20 122.41 250.15 63.91 92.27 64.61 31 ER5c ExonRegion 0 175.14 208.14 253.94 266.63 188.80 589.87 247.40 146.25 123.95 204.88 666.57 303.80 110.96 525.31 291.43 310.31 411.07 277.16 210.89 285.62 83.22 122.85 85.29 32 E5_Da NovelBoundary 0 39.64 29.86 35.07 51.77 18.51 67.29 50.92 30.23 17.65 24.31 43.59 38.26 20.29 49.74 10.51 49.22 20.48 66.99 20.52 25.44 0.00 0.00 3.93 33 E5a_E6a KnownJunction 0 248.93 210.49 271.19 281.95 224.28 532.36 213.92 164.30 128.01 196.47 519.34 282.09 99.83 481.31 286.67 319.57 414.87 317.66 211.21 218.53 89.45 196.74 75.55 34 E6_Aa NovelBoundary 0 39.56 44.40 57.80 42.52 26.74 84.67 44.21 26.41 16.52 25.06 60.91 6.30 0.00 41.56 5.19 41.27 28.05 36.06 9.32 46.72 2.35 0.00 0.00 35 ER6a ExonRegion 0 168.46 223.16 227.58 257.07 166.18 428.83 183.35 151.36 118.28 172.88 509.59 310.28 142.49 471.69 275.48 274.64 364.47 267.81 189.79 183.71 82.72 120.30 82.19 36 E6_Da KnownBoundary 0 93.28 211.08 166.64 225.98 138.54 343.04 160.93 98.50 95.31 161.71 318.40 236.63 51.30 396.96 184.81 260.19 268.26 221.86 170.73 240.14 46.77 67.79 54.72 37 E6a_E7a KnownJunction 0 67.49 65.45 63.27 49.01 131.75 224.70 114.16 57.01 41.70 52.19 270.96 198.81 107.95 203.66 127.08 106.47 159.61 77.35 89.88 31.51 61.34 41.39 23.13 38 ER6b ExonRegion 0 119.75 153.98 135.61 146.95 133.36 354.98 148.10 76.81 73.91 133.99 283.32 242.07 75.37 375.43 176.06 184.01 275.19 184.90 128.53 212.28 42.37 48.14 42.19 39 E6_Db NovelBoundary 0 32.01 80.18 27.41 44.48 16.64 72.00 41.60 21.89 27.49 23.91 65.33 19.06 6.82 62.98 8.90 26.49 39.18 34.86 4.14 33.24 0.00 2.57 0.00 40 E6b_E7a KnownJunction 0 162.62 154.05 140.39 113.51 138.12 374.33 198.29 72.78 74.65 110.46 260.43 300.10 97.23 362.00 260.59 176.11 263.49 141.27 107.58 152.57 38.98 32.33 42.51 41 I6 Intron 0 30.98 48.53 17.06 32.47 26.51 84.64 49.34 16.53 17.61 21.55 30.47 31.17 16.50 34.11 7.99 24.09 21.55 31.15 8.25 22.28 3.97 1.64 3.97 42 I6_AR1 ActiveIntronRegion 0 31.11 48.75 17.14 32.61 26.62 85.01 49.55 16.60 17.68 21.64 30.60 31.30 16.58 34.25 8.03 24.20 21.64 31.28 8.28 22.37 3.99 1.65 3.98 43 ER7a ExonRegion 0 173.17 211.04 238.36 226.59 194.47 445.76 206.56 132.57 126.99 185.39 517.75 412.34 170.62 547.88 319.89 328.00 364.68 301.18 214.50 200.00 68.49 96.18 119.23 44 E7_Da NovelBoundary 0 17.41 46.44 24.16 60.17 49.24 105.05 82.10 14.62 27.60 14.26 35.43 12.60 20.13 41.03 23.49 24.35 30.48 29.43 4.80 35.86 9.02 3.00 7.94 45 E7a_E8a KnownJunction 0 174.10 218.78 266.43 279.05 206.20 490.74 196.52 138.75 116.20 196.63 588.25 465.00 162.00 617.17 370.36 426.81 371.48 322.88 262.97 200.76 60.23 116.47 151.52 46 E8_Aa NovelBoundary 0 50.97 63.34 23.48 37.92 62.48 135.89 79.67 24.77 18.26 13.86 62.02 36.46 25.97 49.74 24.11 41.95 12.25 41.12 4.80 20.77 5.87 0.00 12.80 47 ER8a ExonRegion 0 137.73 192.06 287.92 323.48 195.97 613.64 228.04 172.81 136.39 227.51 672.61 428.78 141.31 541.64 318.60 449.78 418.97 363.73 279.01 207.60 99.29 158.00 126.22 48 E8_Da NovelBoundary 0 38.23 73.67 30.81 37.52 23.43 61.90 54.81 12.98 20.72 29.60 25.11 6.30 6.82 17.13 15.20 24.44 17.77 73.66 17.69 35.73 0.00 0.00 0.00 49 E8a_E9a KnownJunction 0 198.92 282.38 315.42 331.59 300.51 855.42 317.35 206.19 135.76 223.01 783.51 482.11 231.64 545.94 332.78 548.74 523.80 352.52 424.01 216.23 124.36 183.15 174.31 50 I8 Intron 0 35.54 49.07 20.66 35.01 28.14 68.24 35.69 12.30 11.55 17.22 26.83 11.91 7.58 29.83 11.58 19.97 23.63 28.66 9.85 24.83 2.73 2.03 2.60 51 I8_AR1 ActiveIntronRegion 0 28.30 43.73 18.12 37.79 22.87 68.50 37.59 11.36 11.42 16.49 30.38 12.46 7.45 31.42 11.67 19.66 22.75 33.30 7.90 27.29 2.13 1.72 3.24 52 I8_SR1 SilentIntronRegion 0 49.21 59.48 25.55 30.46 38.13 68.77 32.74 14.18 11.96 18.78 20.78 11.04 7.93 27.36 11.61 20.80 25.57 20.68 13.54 20.74 3.86 2.60 1.47 53 E9_Aa NovelBoundary 0 87.35 35.19 42.81 78.11 68.17 138.22 70.00 36.43 25.29 29.33 29.90 0.00 0.00 44.03 10.38 47.34 21.88 25.00 4.05 24.03 0.00 3.12 7.77 54 ER9a ExonRegion 0 163.29 184.96 223.99 224.70 228.04 420.28 206.53 133.24 99.84 166.01 438.98 275.19 101.69 367.14 260.64 228.58 248.65 208.90 161.89 149.88 58.95 87.07 68.35