Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CAPRIN2 Gene 0 122.38 160.52 73.07 146.86 116.53 135.46 53.78 107.05 152.01 105.69 43.51 51.92 42.51 43.94 21.09 44.86 41.69 96.54 71.74 88.08 71.61 85.53 78.34 2 433722 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 438006 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 308433 Transcript 0 75.42 159.84 42.64 103.02 62.14 121.86 53.00 74.06 90.83 87.49 23.85 38.56 40.91 32.73 8.90 37.77 55.35 32.96 78.40 85.52 23.72 86.16 72.56 5 251071 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 454014 Transcript 0 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 298892 Transcript 0 0.00 0.00 7.01 3.30 0.00 12.55 0.00 3.53 4.46 2.77 0.00 0.00 0.00 2.12 0.00 0.00 0.00 0.00 0.00 2.68 2.41 5.45 7.85 8 395805 Transcript 0 18.60 14.27 20.27 20.41 8.23 30.49 6.38 13.06 20.38 29.09 7.19 6.98 14.04 12.83 2.23 9.53 11.27 30.10 10.54 16.62 14.33 13.01 14.26 9 417045 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 IG33_SR2 SilentIntergenicRegion 0 0.97 0.00 0.00 0.00 0.00 5.57 0.00 0.28 0.59 6.38 1.66 0.00 0.00 3.28 0.00 1.07 2.64 26.46 5.48 3.70 7.01 0.83 2.41 11 IG33_SR1 SilentIntergenicRegion 0 1.23 5.40 1.23 0.00 4.09 6.70 0.24 1.73 4.51 4.63 1.51 0.00 3.24 2.69 1.90 0.00 2.88 4.27 2.49 2.51 16.07 2.39 8.33 12 ER1a ExonRegion 0 9.28 6.66 5.78 7.30 6.14 12.51 4.06 16.08 15.35 9.96 4.13 0.00 0.00 11.16 3.44 13.29 8.74 41.00 18.28 18.29 27.36 9.83 21.12 13 E1_Ab KnownBoundary 0 13.34 5.20 12.57 22.31 19.69 15.73 6.23 39.02 27.34 20.66 15.16 0.00 0.00 19.78 4.45 21.11 7.95 72.29 56.94 34.96 41.08 11.57 32.61 14 ER1b ExonRegion 0 23.83 38.27 15.54 26.25 30.61 43.32 17.34 42.32 54.23 36.42 16.52 14.08 12.41 21.33 8.77 24.74 20.20 65.32 41.52 41.64 49.46 38.83 48.60 15 E1a_E2a KnownJunction 0 60.53 117.54 24.01 46.08 113.92 113.80 54.01 64.98 105.55 65.30 26.64 19.81 13.31 14.48 0.00 39.05 24.78 52.85 34.07 86.22 40.09 64.72 67.27 16 I1_SR2 SilentIntronRegion 0 7.99 2.82 2.50 8.13 4.77 3.51 6.76 3.11 5.19 2.72 2.63 8.34 15.37 3.38 0.88 5.23 8.24 1.31 4.54 5.63 1.96 7.43 4.47 17 E2_Aa NovelBoundary 0 6.30 0.00 0.00 8.42 0.00 5.00 8.48 9.00 3.44 3.22 2.68 0.00 13.64 0.00 5.19 20.08 4.77 2.03 0.00 9.08 2.29 5.82 0.00 18 ER2a ExonRegion 1 47.47 81.80 17.60 68.19 69.36 109.59 30.39 71.14 111.71 82.18 22.98 37.04 52.93 20.57 10.22 32.32 58.16 82.15 43.99 98.65 53.13 65.09 74.02 19 E2a_E3a KnownJunction 0 49.93 65.65 19.78 87.30 101.36 107.27 31.13 83.26 116.00 100.46 26.53 68.87 61.03 34.20 10.38 47.85 86.96 89.58 33.60 113.26 51.52 67.79 72.90 20 ER3a ExonRegion 0 67.75 79.15 28.32 67.56 70.46 127.56 39.95 74.76 144.25 95.51 43.19 62.25 56.23 43.44 15.97 41.58 55.66 85.46 40.86 99.46 65.30 76.99 78.21 21 E3a_E4a KnownJunction 0 86.39 100.51 34.27 95.79 64.26 88.41 43.99 73.24 171.61 101.11 34.59 37.81 47.07 33.26 9.77 54.09 51.89 104.63 50.73 97.99 55.78 78.93 92.19 22 E3b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER3b ExonRegion 0 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER4a ExonRegion 0 60.32 119.16 39.06 96.80 101.36 133.12 55.00 84.94 161.75 126.53 55.08 75.07 60.30 44.71 12.11 58.63 60.49 96.08 70.73 106.16 60.31 109.10 94.54 25 E4a_E5a KnownJunction 0 7.48 12.63 0.00 3.50 29.03 24.70 6.36 22.59 67.16 40.80 2.05 6.30 0.00 9.77 0.00 12.82 4.30 14.30 0.00 10.99 17.24 47.76 23.73 26 E4a_E6a KnownJunction 0 75.42 159.84 42.64 103.02 62.14 121.86 53.00 74.06 90.83 87.49 23.85 38.56 40.91 32.73 8.90 37.77 55.35 32.96 78.40 85.52 23.72 86.16 72.56 27 ER5a ExonRegion 0 3.70 16.88 9.88 7.45 15.86 10.14 15.07 21.49 83.60 34.72 6.17 3.13 5.14 12.23 1.47 12.82 5.45 18.74 11.82 13.84 12.66 35.57 21.05 28 E5a_E6a KnownJunction 0 9.41 12.04 6.86 10.49 12.22 15.84 17.71 16.92 85.33 36.67 10.27 0.00 20.13 12.01 0.00 16.92 0.00 18.78 23.15 22.82 10.56 34.84 22.88 29 ER6a ExonRegion 1 78.63 145.78 45.14 106.35 101.84 131.00 54.09 99.83 182.64 130.82 49.89 72.49 54.80 43.16 6.99 39.08 36.39 57.86 55.99 109.71 40.40 108.85 72.73 30 E6a_E7a KnownJunction 0 132.17 208.19 60.44 140.54 149.15 166.67 45.97 118.91 191.29 130.79 51.75 99.63 78.08 52.62 8.90 36.49 67.51 88.50 62.59 158.39 70.74 128.22 108.07 31 ER7a ExonRegion 0 96.35 157.69 48.76 109.09 104.66 125.78 49.83 122.21 204.07 131.71 47.44 63.56 61.61 40.71 11.28 29.65 34.66 66.69 78.62 106.00 48.98 110.76 93.97 32 E7a_E8a KnownJunction 0 92.91 161.81 39.18 75.15 126.74 115.16 55.60 101.66 164.81 113.73 40.38 84.78 52.92 28.67 10.75 28.62 17.48 36.77 79.06 101.44 42.32 94.30 99.36 33 ER8a ExonRegion 0 83.61 144.55 55.86 126.96 116.80 147.25 60.15 107.27 197.36 118.57 54.06 89.97 67.15 59.26 15.37 62.48 58.41 161.26 94.22 121.25 110.40 108.20 109.53 34 E8a_E9a KnownJunction 1 134.84 139.12 64.16 167.71 82.85 146.51 51.41 156.94 228.53 137.05 46.91 76.67 127.43 65.45 39.56 75.88 95.00 190.06 92.80 148.29 150.24 132.88 120.62 35 ER9a ExonRegion 0 85.57 130.68 81.58 145.14 127.76 189.88 59.54 153.10 233.27 149.43 58.98 106.62 88.69 73.85 24.96 57.99 85.42 193.55 96.75 110.19 134.23 118.59 108.20 36 E9a_E10a KnownJunction 1 86.31 174.38 129.71 233.17 118.00 200.85 67.04 202.25 288.37 176.19 53.96 121.24 147.88 92.77 10.01 48.36 73.12 205.32 85.84 85.20 87.97 148.12 169.45 37 ER10a ExonRegion 0 75.01 155.05 75.73 171.67 102.23 204.11 57.98 160.26 236.39 169.90 44.79 90.44 76.87 87.70 23.74 70.61 61.95 146.36 86.82 133.24 106.88 132.10 134.37 38 E10a_E11a KnownJunction 0 107.57 126.03 68.00 169.84 138.96 266.32 62.58 162.49 229.66 148.87 60.70 39.16 62.50 78.52 26.82 77.76 78.07 182.81 52.71 104.06 93.35 163.00 109.61 39 ER11a ExonRegion 1 87.16 132.04 76.65 158.00 102.63 220.25 70.38 156.83 220.14 154.09 47.22 74.53 92.46 72.07 21.03 68.04 69.55 124.59 97.32 108.32 98.46 134.28 81.23 40 E11a_E12a KnownJunction 0 77.94 135.77 51.03 133.18 115.87 233.39 54.89 133.24 182.03 109.06 38.64 49.67 54.38 38.73 28.06 45.89 29.83 95.72 110.40 77.40 83.58 96.57 46.44 41 E11a_E13a KnownJunction 0 26.60 22.56 32.14 25.67 4.16 30.04 6.05 19.14 30.27 46.79 9.58 6.30 21.59 14.01 4.45 10.94 13.37 58.12 11.77 23.97 8.46 13.66 10.50 42 E11a_E14a NovelJunction 0 0.00 22.69 19.54 22.67 12.22 26.52 11.13 10.93 21.56 22.99 4.32 0.00 19.48 9.30 6.30 7.52 0.00 4.31 0.00 2.94 18.29 26.94 39.52 43 ER12a ExonRegion 0 58.46 104.66 52.11 116.77 134.73 161.15 38.32 106.57 183.34 114.73 40.81 82.09 64.59 47.59 14.92 40.00 41.12 107.73 84.00 79.35 90.79 71.99 65.00 44 E12a_E13a KnownJunction 0 79.87 92.68 62.48 106.25 161.88 156.16 32.55 118.01 188.16 131.65 35.85 56.87 52.76 43.20 11.87 68.87 52.55 182.44 97.60 71.14 81.42 78.81 69.31 45 E12a_E14a KnownJunction 0 0.00 0.00 7.01 3.30 0.00 12.55 0.00 3.53 4.46 2.77 0.00 0.00 0.00 2.12 0.00 0.00 0.00 0.00 0.00 2.68 2.41 5.45 7.85 46 I12 Intron 0 8.32 19.99 5.50 22.33 20.72 19.87 15.94 19.64 16.17 13.92 6.90 28.11 19.03 9.67 2.98 5.96 7.42 11.74 8.44 21.34 7.86 25.33 9.31 47 I12_SR1 SilentIntronRegion 0 5.61 17.41 4.61 18.37 24.82 27.64 16.60 16.15 13.31 11.53 4.66 23.57 18.53 8.80 3.33 4.30 5.97 4.44 6.91 12.83 2.65 17.08 8.50 48 I12_AR1 ActiveIntronRegion 0 9.72 21.38 5.96 24.42 18.76 16.07 15.68 21.48 17.68 15.18 8.06 30.52 19.37 10.15 2.82 6.82 8.18 15.45 9.24 25.71 10.51 29.59 9.76 49 E13_Aa NovelBoundary 0 24.60 50.58 1.48 28.93 24.19 18.40 15.46 32.94 27.43 20.60 14.27 24.76 6.82 9.83 0.00 19.57 0.00 47.34 38.21 40.08 41.14 40.90 27.66 50 ER13a ExonRegion 0 88.78 135.89 79.18 185.35 119.55 195.02 77.59 172.50 268.87 205.47 85.40 92.24 100.34 81.57 28.80 91.29 71.68 216.63 166.29 156.94 125.82 105.17 130.89 51 E13a_E14a KnownJunction 0 87.42 117.15 73.98 154.89 177.25 169.50 85.28 160.93 252.86 208.66 81.65 73.67 129.70 75.05 28.56 41.19 44.04 136.71 96.29 154.36 112.74 87.99 56.25 52 ER14a ExonRegion 0 122.85 186.28 92.49 206.76 186.16 247.55 89.49 186.64 258.80 202.21 82.13 81.34 112.28 84.55 33.73 87.49 68.01 176.51 142.89 163.96 114.23 137.52 158.65 53 E14_Da NovelBoundary 0 38.82 100.71 60.23 162.18 131.15 219.14 113.50 104.33 155.81 123.05 32.96 65.27 69.15 45.62 33.01 42.81 48.06 46.64 35.48 87.95 42.56 89.22 32.10 54 E14a_E15a KnownJunction 0 20.37 14.08 10.26 9.29 24.28 13.51 12.67 24.11 24.33 19.45 4.79 0.00 6.33 17.25 0.00 11.71 9.16 8.00 12.42 0.00 32.25 11.02 7.94 55 E14a_E15b KnownJunction 0 19.48 21.11 19.60 24.94 18.76 40.32 8.08 19.02 32.58 17.35 2.37 0.00 20.13 20.37 0.00 12.65 0.00 12.93 23.44 8.88 23.23 32.15 26.38 56 E14a_E15c KnownJunction 0 10.59 5.99 8.40 15.15 12.31 30.95 6.71 6.98 10.50 11.39 4.79 7.65 6.49 11.65 0.00 8.12 9.16 2.07 9.32 9.27 20.20 12.37 18.01 57 I14 Intron 0 54.67 77.45 31.50 132.70 105.72 140.38 53.26 97.10 120.57 90.63 26.34 59.01 63.17 27.36 11.59 18.29 21.41 24.29 30.29 69.69 13.31 79.12 30.18 58 I14_AR1 ActiveIntronRegion 0 54.78 77.61 31.57 132.98 105.95 140.67 53.37 97.31 120.83 90.82 26.39 59.14 63.31 27.42 11.62 18.33 21.46 24.35 30.35 69.84 13.34 79.28 30.24 59 E15_Aa NovelBoundary 0 96.09 54.60 29.54 96.22 62.90 48.61 28.04 49.86 57.70 38.39 9.48 37.96 8.12 5.30 11.25 4.36 12.90 24.62 20.52 31.89 18.29 39.80 19.46 60 E15_Ab NovelBoundary 0 65.79 66.63 29.36 77.88 66.55 90.80 37.94 56.76 82.64 51.25 13.64 44.56 12.66 8.24 6.30 7.52 14.31 15.59 12.33 38.16 10.56 39.74 12.89 61 ER15a ExonRegion 0 39.16 30.50 21.14 30.32 41.47 45.84 16.55 36.73 45.08 29.82 16.91 4.33 16.42 22.33 3.63 13.37 21.46 19.40 23.09 20.74 42.97 25.00 33.77 62 ER15b ExonRegion 0 166.43 138.28 74.52 170.57 140.34 173.45 68.03 104.72 137.59 113.30 44.04 40.55 46.74 47.29 21.76 53.65 45.66 51.92 65.67 66.88 91.09 90.56 66.22 63 E15_Ac KnownBoundary 0 297.02 193.12 103.01 303.39 182.43 237.42 100.87 160.48 200.72 174.12 42.91 37.51 60.06 47.97 13.97 68.36 58.53 70.51 59.67 87.57 111.20 89.89 70.85 64 ER15c ExonRegion 0 225.41 227.73 124.06 283.56 229.48 251.97 95.24 172.96 205.44 151.06 50.64 77.68 90.03 54.50 32.25 57.37 55.47 75.56 90.47 88.18 92.34 133.09 81.46 65 E15_Da NovelBoundary 0 12.74 22.10 5.80 23.14 26.91 13.23 23.05 20.00 31.19 16.98 2.00 6.30 13.64 4.94 4.45 7.43 9.54 11.32 14.21 20.45 16.74 21.80 3.24 66 E15a_E16a KnownJunction 1 288.35 184.18 136.69 249.35 327.08 291.71 97.20 177.36 179.40 148.82 52.96 129.34 52.92 64.39 31.40 51.70 46.00 51.44 91.11 91.91 84.02 113.53 117.46 67 I15 Intron 0 21.81 30.56 8.14 15.40 26.15 20.00 16.29 21.42 25.13 18.07 4.11 6.99 10.03 5.36 2.18 5.55 2.63 12.60 6.57 14.01 4.40 23.98 8.40 68 I15_AR1 ActiveIntronRegion 1 3.76 8.33 4.35 3.52 9.32 10.00 10.59 6.02 10.00 5.29 0.00 6.56 17.70 0.00 0.00 2.97 2.77 3.34 2.16 9.06 2.91 13.31 2.75 69 I15_SR1 SilentIntronRegion 0 22.94 31.98 8.42 16.19 27.20 20.74 16.87 22.43 26.25 18.96 4.37 7.16 9.84 5.69 2.32 5.77 2.68 13.22 6.79 14.50 4.55 24.85 8.76 70 E16_Aa NovelBoundary 0 33.41 40.58 16.53 21.34 55.35 4.83 17.05 24.64 24.31 20.44 0.00 5.40 13.64 4.94 8.90 3.33 0.00 4.52 32.00 6.26 0.00 20.70 0.00 71 ER16a ExonRegion 0 225.29 171.30 131.07 267.58 249.85 247.65 96.71 172.01 178.28 141.40 61.53 72.10 37.85 62.50 36.05 58.74 40.79 91.25 84.71 93.76 72.77 109.33 95.34 72 E16_Da NovelBoundary 0 10.52 17.83 13.90 28.43 14.26 7.78 14.44 15.07 14.67 18.45 9.84 6.30 20.29 2.18 0.00 4.10 4.58 3.73 0.00 17.71 8.71 20.39 3.59 73 E16a_E17a KnownJunction 0 311.61 162.41 158.39 294.50 273.77 282.45 110.54 161.09 172.39 138.20 48.54 68.57 41.56 34.79 38.82 48.71 32.82 90.70 109.09 106.42 66.04 87.56 101.58 74 I16 Intron 0 18.44 22.20 7.68 21.70 23.32 18.99 17.44 20.65 17.78 19.94 5.23 10.54 12.64 6.02 1.99 5.00 6.40 10.16 6.06 11.60 4.19 18.53 7.20 75 I16_SR1 SilentIntronRegion 0 11.80 19.70 6.68 22.10 20.53 19.79 17.40 18.18 16.67 18.59 4.88 13.63 16.21 6.31 0.89 7.50 7.47 11.37 6.65 11.30 3.83 17.97 7.93 76 I16_AR1 ActiveIntronRegion 0 23.30 24.06 8.43 21.46 25.40 18.45 17.51 22.49 18.63 20.98 5.50 8.32 10.07 5.83 2.80 3.20 5.64 9.31 5.64 11.85 4.46 18.98 6.69 77 ER17a ExonRegion 0 282.79 212.29 153.94 261.06 222.67 268.28 88.79 147.38 164.46 141.77 51.61 46.61 33.86 40.55 28.15 58.33 44.46 99.49 106.46 105.09 82.40 99.36 101.50 78 E17a_E18a KnownJunction 0 175.66 90.05 38.11 113.11 75.21 77.00 13.65 48.30 85.73 35.54 16.48 11.55 0.00 4.83 18.91 11.11 16.46 35.28 34.26 35.09 24.22 31.05 31.84 79 E17a_E18b KnownJunction 0 223.97 167.01 125.10 131.65 186.93 279.90 60.15 104.66 80.41 104.12 24.53 45.01 13.15 19.42 24.85 43.58 48.81 85.52 55.44 50.43 60.48 110.89 65.99 80 I17 Intron 0 31.28 28.21 14.32 26.00 31.40 27.49 19.99 19.79 18.06 18.51 6.19 9.66 8.14 5.13 3.41 2.85 5.99 8.98 4.76 12.71 2.59 12.56 4.39 81 I17_AR1 ActiveIntronRegion 0 26.55 26.66 15.46 26.75 30.05 28.07 20.27 20.52 19.05 19.19 5.70 10.27 8.79 5.04 2.99 2.05 7.04 8.65 4.80 13.48 2.76 12.55 4.42 82 I17_AR2 ActiveIntronRegion 0 59.70 37.97 8.03 22.25 40.10 24.62 18.93 15.93 12.83 14.95 9.22 6.17 4.56 5.82 6.01 7.63 0.00 11.09 4.61 8.59 1.62 12.97 4.31 83 E18_Aa NovelBoundary 0 97.13 73.67 34.21 68.72 37.10 11.36 16.43 43.50 31.63 34.09 4.74 18.91 0.00 9.71 4.45 8.72 4.49 25.78 9.22 23.84 5.50 5.88 19.21 84 ER18a ExonRegion 0 144.58 113.47 53.89 132.84 104.71 104.24 27.10 57.19 91.70 34.89 20.75 23.28 15.53 15.48 14.57 19.02 16.14 41.14 38.58 31.63 35.26 39.45 40.98 85 E18_Ab KnownBoundary 0 190.48 158.06 71.43 178.43 139.13 145.77 55.25 69.13 106.65 32.53 16.64 38.26 18.67 25.96 9.02 11.11 8.42 41.00 61.55 19.81 48.19 42.80 43.54 86 ER18b ExonRegion 0 323.22 300.70 173.21 303.13 229.68 263.69 98.68 157.36 202.36 149.29 54.31 43.59 25.29 63.87 48.03 48.95 45.40 120.81 94.16 93.08 104.24 117.06 89.93 87 E18_Da KnownBoundary 0 276.72 264.36 189.35 317.24 117.57 176.72 80.20 155.47 192.21 154.48 54.80 23.56 0.00 57.10 49.57 38.02 24.96 87.43 39.34 70.18 58.69 68.70 50.28 88 ER18c ExonRegion 0 309.55 391.48 168.65 313.73 199.14 164.08 79.40 161.14 177.01 126.99 55.53 38.38 17.00 39.58 43.18 37.38 35.48 57.82 68.62 94.38 50.85 97.04 65.87