Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C12orf11 Gene 0 91.41 89.89 53.99 55.45 71.77 77.57 47.20 36.97 27.81 55.46 229.19 363.88 238.63 207.40 151.94 135.90 159.56 51.17 39.71 53.45 57.77 60.68 35.45 2 261191 Transcript 1 26.96 60.21 14.45 20.21 37.08 44.88 28.79 15.04 18.95 36.42 244.11 266.52 160.72 232.36 83.52 119.95 193.63 58.42 25.81 54.82 81.15 35.99 26.52 3 261190 Transcript 0 111.83 58.25 51.27 38.17 50.00 47.87 25.46 32.80 17.25 32.02 95.29 35.71 51.13 9.65 17.62 75.83 68.16 18.72 22.78 19.94 16.09 26.36 19.76 4 335745 Transcript 1 65.12 62.39 33.23 40.87 15.79 25.89 22.35 17.23 16.15 33.34 96.50 69.32 30.68 24.07 21.01 57.42 48.34 27.38 8.85 41.10 25.05 48.77 24.50 5 ER1a ExonRegion 0 2.69 4.40 2.79 2.82 2.18 5.40 2.93 2.38 4.75 9.14 29.90 3.62 1.03 24.63 10.41 28.76 19.01 42.64 10.02 15.53 17.84 4.26 8.60 6 E1_Ab KnownBoundary 1 17.63 12.30 1.83 2.06 4.24 46.11 4.50 4.27 3.04 15.31 40.43 11.25 6.33 114.96 25.47 52.38 52.17 39.63 8.00 20.33 28.85 6.06 8.71 7 ER1b ExonRegion 1 18.87 34.34 11.35 9.68 16.28 59.80 16.04 7.39 5.57 21.56 185.85 18.52 12.42 126.79 46.91 111.40 155.31 42.54 14.15 36.61 87.56 16.77 37.41 8 E1a_E2a KnownJunction 1 10.30 41.31 11.92 9.52 4.33 12.55 8.74 14.50 11.40 40.67 456.27 18.91 6.82 233.51 82.33 103.31 407.29 40.13 24.47 47.11 160.62 18.00 8.28 9 E1a_E4a KnownJunction 0 0.00 0.00 3.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 2.18 0.00 0.00 0.00 2.40 0.00 0.00 0.00 0.00 0.00 10 ER2a ExonRegion 0 14.55 50.79 16.14 24.16 50.23 86.95 39.17 14.54 21.69 34.00 263.27 261.07 143.60 231.62 98.74 147.69 165.94 70.70 38.95 57.37 62.43 45.42 41.82 11 E2a_E3a KnownJunction 1 45.86 85.12 17.39 39.95 71.39 72.80 35.95 5.46 29.80 57.38 259.49 467.85 339.75 347.87 101.61 144.83 200.65 70.14 17.60 63.79 74.19 45.62 36.36 12 ER3a ExonRegion 1 33.33 70.74 17.19 26.13 44.24 38.83 29.16 20.40 23.75 41.43 226.43 419.44 259.52 290.41 92.45 151.82 170.19 69.72 35.93 61.67 61.79 48.23 29.56 13 E3a_E4a KnownJunction 0 55.05 108.93 21.26 18.65 50.08 52.75 56.79 32.98 22.34 35.91 229.32 428.24 213.62 266.11 115.58 143.30 198.69 57.21 27.86 83.48 110.03 54.44 34.49 14 ER4a ExonRegion 1 31.42 73.85 30.21 41.56 49.15 76.22 46.75 23.83 23.49 49.87 294.09 452.46 259.82 297.33 102.82 180.54 210.20 87.69 47.26 68.71 107.11 62.73 37.54 15 E4a_E5a KnownJunction 1 37.41 74.92 35.92 51.84 82.17 145.94 69.29 29.45 33.54 67.05 368.09 502.06 233.59 359.59 121.52 188.75 240.58 95.51 69.46 90.70 116.76 87.44 43.36 16 ER5a ExonRegion 1 35.12 65.55 36.44 53.27 52.99 83.54 41.73 35.27 37.62 67.72 322.32 387.62 295.24 326.35 108.28 216.86 233.39 102.01 72.24 66.43 99.17 59.47 38.32 17 E5a_E6a KnownJunction 1 31.78 82.35 58.51 65.53 36.59 118.45 62.49 37.09 36.43 72.80 336.03 444.29 300.63 333.04 114.72 207.89 218.89 100.86 60.24 58.29 92.91 60.74 39.69 18 ER6a ExonRegion 0 31.03 86.15 43.17 53.44 48.81 70.13 32.15 39.68 42.81 66.43 335.52 409.63 318.66 328.86 131.86 206.68 230.19 76.71 50.44 68.20 111.86 71.64 49.08 19 E6a_E7a KnownJunction 0 72.46 79.72 42.58 62.70 79.54 75.64 43.19 44.48 40.91 82.22 243.43 417.29 428.22 411.97 177.27 204.65 260.12 68.27 76.43 49.15 63.01 87.38 60.01 20 ER7a ExonRegion 0 44.15 95.94 36.16 55.84 51.42 81.26 41.34 38.96 39.32 79.10 311.65 477.05 339.35 387.89 171.69 221.02 260.05 80.31 71.04 74.86 92.30 72.60 53.86 21 E7a_E8a KnownJunction 1 39.86 97.88 30.96 45.85 43.89 89.49 60.55 40.66 32.35 71.53 276.07 308.20 243.98 369.71 122.75 178.16 285.27 55.84 31.53 64.11 66.66 65.89 56.00 22 ER8a ExonRegion 0 47.43 107.49 42.04 54.64 54.62 96.70 41.48 33.98 29.24 80.18 283.18 471.71 357.27 343.01 154.35 206.16 224.62 66.95 59.10 64.18 83.77 61.82 37.52 23 E8a_E9a KnownJunction 0 96.39 166.42 29.30 51.51 95.59 87.00 55.95 30.27 36.17 78.38 266.33 511.22 331.15 349.82 161.82 155.26 235.44 55.92 50.73 68.71 112.37 60.25 50.62 24 E8a_E10a NovelJunction 0 3.26 3.35 0.00 3.16 4.33 0.00 5.34 0.00 0.00 0.00 9.74 5.70 12.82 7.24 4.57 4.10 0.00 0.00 0.00 0.00 0.00 5.88 0.00 25 ER9a ExonRegion 0 97.29 118.94 51.77 68.02 85.45 73.07 45.54 39.41 26.87 66.34 267.90 487.11 349.93 307.86 198.03 147.48 203.08 60.20 53.48 65.06 74.61 83.36 36.77 26 E9a_E10a KnownJunction 0 121.65 150.04 75.72 101.39 104.33 81.94 68.98 36.84 19.15 73.23 278.65 382.62 308.91 276.18 246.62 153.55 121.08 60.81 48.00 92.87 76.36 109.49 43.88 27 ER10a ExonRegion 0 91.36 157.87 53.26 70.52 97.64 76.82 59.58 28.08 29.99 61.75 279.73 562.11 338.10 253.67 172.69 158.18 157.49 54.39 53.76 65.18 50.61 84.73 37.85 28 E10a_E11a KnownJunction 0 101.72 151.49 59.84 78.18 125.81 82.68 47.61 32.69 36.14 67.85 307.34 684.22 381.14 276.24 198.53 122.19 145.77 16.33 51.01 53.63 32.68 89.83 38.58 29 ER11a ExonRegion 0 97.19 119.91 71.76 82.45 75.23 98.35 51.70 45.73 34.60 73.22 317.82 616.38 378.98 226.89 184.81 148.09 182.35 42.01 33.72 67.69 51.29 111.91 44.59 30 E11_Da KnownBoundary 0 58.16 33.68 42.16 38.92 13.84 29.30 8.61 28.01 18.61 26.30 134.14 207.22 66.39 57.86 15.45 84.76 92.75 23.26 13.27 34.07 16.43 57.80 22.19 31 E11a_E11b KnownJunction 0 126.84 106.10 60.14 73.38 31.58 46.73 32.15 32.61 30.79 59.58 156.62 64.52 61.36 22.19 24.23 114.84 84.71 50.28 17.69 72.99 44.29 88.54 40.38 32 E11_Ab KnownBoundary 0 177.74 68.61 45.65 28.10 65.28 32.82 21.73 15.85 21.50 34.14 101.60 146.15 190.57 62.33 36.10 82.46 61.43 23.38 16.94 35.15 34.66 39.80 41.23 33 ER11b ExonRegion 0 187.66 130.83 92.72 88.59 77.60 82.52 41.48 50.13 45.29 75.70 323.44 578.71 436.17 237.12 194.38 188.23 201.35 62.82 45.66 82.98 60.97 102.09 49.92 34 ER11c ExonRegion 0 144.40 155.49 79.04 73.60 75.73 82.75 50.52 43.56 39.86 76.71 306.40 522.41 307.01 225.37 171.04 135.25 200.61 35.27 53.26 56.63 61.78 87.20 55.53 35 E11_Db NovelBoundary 0 10.82 22.17 1.51 8.86 15.45 21.75 24.33 9.12 13.19 3.81 30.01 31.36 34.25 11.60 8.90 24.10 12.72 2.36 8.28 21.03 8.09 5.57 3.84 36 E11b_E12a KnownJunction 0 125.43 140.50 73.45 67.36 79.88 73.31 61.70 20.99 22.57 60.28 335.14 369.42 266.38 164.75 128.81 88.61 212.34 19.73 11.95 25.76 49.42 81.93 36.45 37 E11b_E13a KnownJunction 1 3.41 18.68 6.33 8.36 0.00 5.05 12.54 1.85 1.50 7.09 36.38 74.12 0.00 25.96 17.80 0.00 11.97 4.48 0.00 9.20 5.81 9.00 8.62 38 I11 Intron 0 27.08 24.25 9.41 11.35 21.28 11.39 10.04 11.84 10.86 6.16 9.85 42.26 34.91 13.32 15.76 11.26 11.69 4.01 4.95 12.02 1.37 9.71 2.55 39 I11_AR1 ActiveIntronRegion 0 8.31 19.28 11.41 9.78 17.87 7.73 5.74 9.40 10.23 7.86 5.88 52.42 34.69 9.78 10.36 11.27 13.31 2.21 1.97 13.79 0.00 10.19 3.49 40 I11_AR2 ActiveIntronRegion 0 18.67 34.40 10.13 6.78 20.46 5.94 9.39 9.98 12.16 5.25 4.16 45.87 41.91 11.37 12.04 6.77 4.42 2.31 1.53 6.64 0.00 10.50 2.26 41 I11_SR2 SilentIntronRegion 0 44.75 23.28 9.74 17.51 27.51 19.17 13.69 16.40 12.35 7.42 16.99 43.70 35.43 18.23 23.08 17.01 18.83 6.61 8.94 17.48 3.06 10.77 2.94 42 E12_Aa NovelBoundary 0 84.76 33.88 23.51 26.40 11.88 10.45 18.86 30.15 8.85 12.92 36.01 32.71 46.43 18.84 27.94 25.21 20.85 4.35 12.89 40.65 0.00 13.72 0.00 43 I11_AR3 ActiveIntronRegion 0 17.23 8.13 8.58 7.01 4.59 0.00 7.57 3.46 1.59 3.44 11.05 26.60 28.81 10.21 16.99 0.85 3.30 3.70 15.93 10.64 3.15 5.95 0.00 44 ER12a ExonRegion 0 219.72 176.36 77.14 96.74 92.23 111.52 75.47 51.32 46.07 60.85 306.04 495.94 482.44 206.25 186.68 146.12 200.56 35.39 38.58 52.21 46.91 85.79 46.52 45 E12a_E13a KnownJunction 1 151.36 70.12 73.77 65.09 93.63 131.74 83.78 43.95 47.51 58.37 214.48 395.68 324.98 114.96 165.40 73.40 207.48 12.73 20.52 61.81 29.41 60.68 16.99 46 E13_Aa NovelBoundary 0 24.89 39.86 1.42 9.72 16.72 15.79 9.58 10.56 4.14 7.60 9.16 31.51 13.15 4.94 4.45 7.26 9.16 0.00 0.00 11.38 0.00 2.33 3.67 47 ER13a ExonRegion 0 249.28 132.63 94.07 104.45 157.39 135.11 92.07 73.72 46.51 86.18 301.47 612.35 550.94 252.35 285.63 180.74 227.95 39.45 42.70 78.17 43.88 115.27 44.35 48 E13a_E14a KnownJunction 0 207.67 211.02 120.96 87.60 106.71 138.05 129.31 59.89 45.57 86.17 194.63 466.50 317.67 146.15 209.41 173.97 198.13 45.43 67.39 45.70 42.44 61.60 38.84 49 ER14a ExonRegion 0 253.18 180.29 110.81 87.53 187.77 169.06 110.10 67.74 39.60 76.62 273.59 541.43 416.22 240.08 266.45 178.33 182.11 61.44 68.51 76.46 61.19 91.22 49.10 50 E14_Da KnownBoundary 0 103.28 66.17 32.49 35.29 51.87 30.32 25.17 15.94 10.62 35.08 64.33 58.82 118.50 58.98 34.98 44.77 65.92 24.42 25.51 25.06 24.46 21.80 29.62 51 E14a_E14b KnownJunction 0 223.67 116.49 99.11 76.35 100.00 95.74 50.92 65.60 34.49 64.04 187.94 71.42 102.27 17.13 35.23 151.67 136.33 35.03 45.55 39.88 32.19 52.72 39.52 52 E14_Ab KnownBoundary 1 94.68 48.22 40.80 16.88 50.17 42.48 35.73 28.34 12.33 27.59 134.72 214.12 40.42 49.44 80.97 99.38 63.96 13.06 29.55 22.05 23.04 13.53 7.26 53 ER14b ExonRegion 1 238.11 127.10 129.89 85.86 149.84 87.11 83.41 67.41 35.20 87.74 264.81 619.11 515.90 311.83 288.67 216.97 178.25 49.89 73.26 71.28 63.91 60.42 48.45 54 ER14c ExonRegion 0 205.80 98.56 131.51 93.52 131.34 87.40 60.25 70.46 41.23 85.43 313.79 644.26 348.76 331.35 332.90 246.31 190.96 50.44 93.87 81.98 72.44 76.51 48.67 55 E14_Db KnownBoundary 0 224.19 92.48 122.14 98.69 130.56 112.15 60.50 52.41 39.99 84.37 317.71 600.05 315.24 354.82 324.99 251.64 226.09 47.59 132.14 84.82 61.28 109.12 59.07 56 ER14d ExonRegion 0 165.99 126.84 116.90 85.45 121.21 96.00 57.76 65.03 31.93 83.61 338.35 488.15 256.78 253.44 204.90 181.23 305.83 43.75 83.93 74.47 79.39 69.95 59.69 57 E14c_E15a KnownJunction 0 212.93 180.23 101.47 82.74 166.38 96.65 65.71 66.09 24.33 81.34 337.61 477.31 229.86 191.54 215.47 139.45 326.60 33.33 33.22 76.38 96.43 48.62 75.80 58 ER15a ExonRegion 0 213.28 161.60 124.35 105.71 197.49 166.19 118.10 71.66 37.04 95.76 306.25 578.26 264.28 235.89 292.32 184.63 246.84 45.27 57.79 67.87 64.80 73.16 44.51 59 E15a_E16a KnownJunction 0 137.95 113.14 112.80 116.60 80.56 104.77 70.70 59.15 32.20 89.05 136.93 374.52 161.68 196.36 310.53 115.95 151.94 36.73 38.12 50.17 24.59 45.86 30.56 60 I15_AR1 ActiveIntronRegion 0 19.00 8.40 7.89 4.06 7.38 1.82 5.54 2.89 1.06 5.59 4.58 7.65 8.66 1.49 3.88 6.12 2.78 2.27 0.86 4.88 0.60 0.48 2.48 61 ER16a ExonRegion 0 116.72 74.26 120.83 99.83 93.79 72.84 47.77 66.14 38.91 84.62 207.18 416.01 143.91 163.61 248.23 113.73 131.19 30.95 35.72 56.54 36.05 67.67 39.15 62 E16a_E17a KnownJunction 1 155.81 84.72 158.60 87.90 133.11 73.99 53.04 75.37 21.04 62.67 212.21 365.22 112.65 153.39 245.38 112.36 135.95 18.94 13.27 30.81 5.87 41.64 18.35 63 ER17a ExonRegion 0 73.80 67.77 55.58 47.98 44.91 34.75 29.86 41.27 21.34 45.14 99.01 225.85 108.66 89.67 152.91 47.61 47.14 15.94 12.93 25.85 16.90 52.19 12.65 64 IG4_AR4 ActiveIntergenicRegion 0 0.85 4.05 0.00 0.82 2.84 0.00 3.00 0.48 0.00 1.86 0.78 15.92 2.66 3.01 2.76 1.19 0.16 0.00 0.00 1.79 0.88 1.67 0.00