Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LIMA1 Gene 0 44.31 24.72 22.42 19.15 27.75 38.20 29.44 24.97 34.10 14.83 92.31 88.09 112.30 64.79 39.99 54.59 42.14 71.75 18.52 36.38 281.39 178.00 139.50 2 394943 Transcript 0 10.59 6.28 11.41 5.63 10.70 34.30 17.06 18.54 18.44 11.07 55.33 55.58 60.10 48.22 29.75 25.99 28.83 24.28 19.25 19.90 144.54 71.23 47.52 3 341247 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 420992 Transcript 0 13.97 6.48 7.40 2.29 10.37 11.69 21.07 3.51 6.29 0.78 15.83 14.03 43.42 6.90 6.99 16.24 7.52 46.05 13.78 16.94 121.87 92.04 97.54 5 IG36 Intergenic 0 4.25 3.09 3.77 8.39 6.67 6.35 7.24 3.92 2.35 6.55 3.05 7.34 5.52 5.26 13.05 7.95 7.22 6.31 2.52 6.98 2.41 0.51 3.39 6 IG36_SR1 SilentIntergenicRegion 0 4.25 3.09 3.78 8.40 6.68 6.36 7.25 3.92 2.35 6.55 3.06 7.35 5.52 5.27 13.07 7.96 7.23 6.32 2.52 6.99 2.41 0.51 3.40 7 ER1a ExonRegion 0 52.51 8.93 4.71 11.09 10.03 45.21 23.30 7.55 19.95 4.89 2.65 1.20 0.00 0.00 2.36 7.03 3.24 11.77 10.76 5.83 31.57 7.23 25.22 8 E1a_E2a KnownJunction 0 7.26 0.00 3.37 6.96 0.00 0.00 4.50 5.96 11.02 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.28 0.00 0.00 9.08 5.45 7.68 9 ER2a ExonRegion 0 5.80 5.38 7.33 20.12 8.06 12.67 9.04 15.82 35.71 7.76 3.85 4.54 10.87 1.00 4.27 10.80 3.30 9.00 10.14 12.36 37.37 10.18 32.05 10 E2a_E3a KnownJunction 0 13.04 3.35 7.95 25.80 4.33 8.06 15.90 10.31 46.35 4.19 7.42 6.75 27.11 0.00 4.45 12.56 4.39 13.47 14.12 9.59 18.72 20.39 67.01 11 I2_AR1 ActiveIntronRegion 0 15.38 4.34 4.32 8.10 4.16 2.98 5.78 4.28 2.30 1.66 0.00 0.00 1.62 0.00 0.38 0.00 0.21 2.91 1.39 1.28 2.07 0.13 0.18 12 ER3a ExonRegion 0 8.05 7.12 8.18 24.27 12.27 55.41 15.63 15.41 47.95 8.80 3.32 9.41 11.22 1.73 9.15 15.77 1.29 18.84 10.18 7.31 36.70 28.72 48.26 13 E3_Da NovelBoundary 0 25.93 16.18 2.96 12.19 12.99 14.42 9.01 10.76 8.01 3.33 0.00 0.00 7.47 0.00 0.00 0.00 0.00 6.84 0.00 2.81 6.05 0.00 0.00 14 E3a_E5a KnownJunction 0 3.78 11.64 8.19 21.28 32.51 134.30 27.60 18.28 40.74 11.71 0.00 6.30 6.33 2.47 19.90 17.26 0.00 20.15 15.72 8.76 40.22 39.80 37.22 15 E4_Aa NovelBoundary 1 133.28 72.03 10.26 18.55 58.23 112.78 97.33 25.92 18.29 15.88 308.08 12.15 37.17 76.64 84.43 204.65 136.89 107.74 58.07 127.64 456.91 267.65 294.84 16 ER4a ExonRegion 1 27.95 12.96 14.80 4.59 20.74 23.38 42.14 7.02 12.57 1.57 31.65 28.06 86.85 13.81 13.99 32.48 15.03 92.09 27.56 33.87 243.75 184.08 195.08 17 E4_Da NovelBoundary 0 24.82 3.35 11.50 8.96 20.37 5.79 7.73 12.61 14.24 8.14 208.74 126.79 128.24 55.09 37.95 38.45 115.19 47.09 0.00 23.20 495.70 147.14 203.08 18 E4a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E5_Aa NovelBoundary 1 25.12 3.35 18.45 13.45 7.56 7.89 11.97 38.77 35.30 22.83 337.82 109.09 117.85 113.72 92.96 130.22 163.35 115.12 22.12 164.27 635.19 207.15 128.56 20 ER5a ExonRegion 0 41.43 60.82 37.11 41.76 49.73 88.49 65.91 41.15 69.59 31.02 182.72 128.84 106.89 102.42 76.62 139.78 70.30 165.84 44.76 98.67 662.11 367.80 328.09 21 E5_Ab KnownBoundary 0 133.13 138.53 27.32 54.67 180.05 245.77 252.88 48.39 78.96 39.92 266.75 180.96 169.14 141.62 108.29 145.52 105.00 176.76 53.65 94.85 917.76 325.52 340.60 22 ER5b ExonRegion 0 135.46 84.32 46.92 59.32 67.59 74.63 74.75 53.72 81.38 37.43 252.31 258.12 331.78 174.72 89.60 124.17 107.11 148.95 32.61 102.14 614.59 511.58 293.87 23 E5a_E6a KnownJunction 0 171.96 107.15 43.64 53.21 78.52 61.27 58.21 70.07 99.74 40.64 268.54 284.04 586.16 153.92 118.55 136.46 142.78 136.92 38.12 127.90 681.03 547.31 379.18 24 ER6a ExonRegion 1 59.14 88.83 58.33 45.62 72.75 84.59 67.49 51.91 91.25 36.78 250.07 369.69 557.29 163.31 99.12 128.96 119.57 158.67 33.47 83.40 758.21 478.40 298.92 25 E6a_E7a KnownJunction 0 44.30 112.09 47.43 51.21 129.37 134.13 72.25 59.19 79.37 38.06 275.07 393.88 503.86 230.21 126.34 145.69 106.87 159.97 45.93 79.90 802.18 437.45 374.40 26 ER7a ExonRegion 0 52.44 63.33 62.30 38.85 73.02 100.38 73.71 63.63 100.91 38.33 268.39 393.34 408.00 198.63 104.17 187.46 122.42 245.64 53.70 106.37 778.00 556.12 498.32 27 E7_Da NovelBoundary 0 9.78 0.00 8.81 25.11 33.96 10.85 7.95 29.61 43.92 5.43 2.68 12.60 12.99 2.12 9.89 24.61 22.63 38.76 17.22 12.34 301.91 238.14 68.63 28 E7a_E8a KnownJunction 0 70.83 44.79 69.72 30.87 38.46 61.16 41.42 63.99 77.00 32.07 363.30 272.64 314.10 209.49 115.21 152.18 177.65 258.67 62.78 90.00 631.86 416.69 418.71 29 I7 Intron 0 35.75 5.63 6.35 14.03 40.75 13.92 21.31 14.60 21.72 4.09 2.61 7.68 19.02 3.40 4.74 5.46 2.78 7.12 2.33 4.85 105.48 71.07 29.90 30 I7_AR1 ActiveIntronRegion 0 29.15 6.05 3.50 6.70 22.81 7.97 13.86 10.79 22.12 2.94 3.45 5.58 10.76 5.06 4.23 9.64 5.51 11.89 3.76 5.49 171.90 64.19 32.39 31 I7_SR1 SilentIntronRegion 0 9.73 3.43 4.07 7.87 12.70 4.78 8.85 5.48 8.42 1.83 1.86 5.51 2.14 3.63 4.90 0.74 3.00 3.69 0.79 1.84 70.15 29.92 24.12 32 I7_AR2 ActiveIntronRegion 1 39.71 8.11 6.87 16.13 60.66 13.42 30.99 11.49 24.01 4.85 2.33 11.58 40.74 2.78 5.84 4.56 1.99 5.47 1.92 8.58 80.47 75.70 26.98 33 I7_SR2 SilentIntronRegion 0 27.46 5.46 10.03 13.29 32.43 18.47 18.61 13.35 19.97 4.03 2.60 4.32 12.53 3.10 5.39 5.95 2.72 6.54 3.48 3.56 100.11 59.85 35.42 34 I7_AR3 ActiveIntronRegion 0 52.63 4.30 4.73 19.08 51.80 16.23 24.31 23.34 25.71 4.89 2.63 9.64 17.93 3.20 3.49 4.98 1.90 7.51 1.28 3.75 106.17 95.39 27.57 35 E8_Aa NovelBoundary 0 68.98 0.00 4.52 15.48 39.64 21.12 14.71 46.58 41.06 1.53 7.26 22.81 6.17 12.18 10.01 3.42 0.00 1.99 0.00 2.75 229.26 80.15 27.40 36 ER8a ExonRegion 0 106.90 52.93 76.28 31.50 61.99 76.02 78.73 71.63 86.33 38.65 350.23 292.20 382.89 224.04 112.88 196.05 145.51 266.01 43.83 101.87 878.20 468.70 419.86 37 E8a_E9a KnownJunction 0 212.33 108.86 87.16 44.18 123.60 127.88 93.62 85.06 133.59 43.38 401.05 231.98 282.61 224.91 97.90 188.41 188.22 340.66 77.56 119.14 1152.64 763.09 561.35 38 ER9a ExonRegion 0 147.39 76.26 70.04 35.22 116.81 122.74 80.94 73.34 107.50 40.28 291.83 297.31 355.88 203.77 120.05 163.62 157.59 253.72 65.25 91.71 1055.04 604.44 515.68 39 E9a_E10a KnownJunction 0 3.19 2.89 5.97 2.06 0.00 25.50 10.29 13.31 11.26 5.80 40.12 31.06 33.44 34.73 28.31 18.54 18.05 9.29 19.39 8.95 76.97 33.07 15.02 40 E9a_E10b KnownJunction 0 72.01 37.56 53.84 23.87 59.59 73.93 42.84 60.50 73.70 42.25 152.25 240.38 228.07 128.20 43.51 82.54 74.99 101.31 12.89 58.04 579.35 271.82 245.76 41 E9a_E11a NovelJunction 0 3.41 5.79 1.30 0.00 0.00 0.00 0.00 4.89 1.62 0.00 4.90 0.00 6.82 2.47 0.00 0.00 0.00 0.00 0.00 0.00 8.46 0.00 11.69 42 I9 Intron 0 9.38 13.77 4.20 9.14 7.49 2.27 7.18 3.83 3.91 4.12 2.53 9.78 22.73 1.97 4.47 4.00 3.39 6.94 2.93 8.29 12.10 17.20 11.66 43 I9_SR1 SilentIntronRegion 0 9.88 14.70 4.50 10.12 8.36 2.68 7.27 4.06 3.99 4.71 2.59 10.58 24.60 1.95 4.40 4.34 3.52 6.90 3.05 9.14 13.70 18.67 11.77 44 E10_Ab NovelBoundary 0 0.00 6.51 3.61 3.93 0.00 15.79 0.00 2.42 1.19 0.00 2.68 0.00 0.00 0.00 0.00 3.25 0.00 2.53 0.00 7.80 8.77 14.14 0.00 45 ER10a ExonRegion 0 17.99 9.66 16.85 9.20 21.41 43.09 23.83 23.77 25.63 16.34 70.55 80.10 86.77 61.72 31.19 33.44 39.61 39.26 19.11 30.85 212.11 109.38 80.02 46 ER10b ExonRegion 0 119.92 40.17 59.41 36.87 76.30 87.85 56.72 55.82 60.06 36.96 222.58 185.53 217.55 168.70 107.80 130.50 100.57 129.55 36.00 70.41 794.95 376.35 282.51 47 E10a_E11a KnownJunction 0 134.84 34.07 72.41 46.91 71.99 52.70 54.67 59.68 58.91 46.98 278.49 279.39 362.48 235.57 134.62 148.85 124.82 156.98 43.11 75.49 1017.97 417.80 315.50 48 I10_SR4 SilentIntronRegion 0 2.37 7.76 0.87 10.63 0.45 3.08 3.79 6.15 2.91 4.24 1.90 1.83 11.45 0.00 3.93 6.65 0.28 31.00 1.30 9.52 25.66 10.17 18.57 49 I10_AR4 ActiveIntronRegion 0 0.00 5.00 0.25 9.68 0.00 1.77 1.46 5.80 3.66 2.76 1.11 1.91 11.37 0.03 0.98 0.35 4.76 25.30 0.00 6.78 17.07 6.18 6.37 50 I10_AR5 ActiveIntronRegion 0 6.75 2.23 3.57 1.63 3.96 4.48 0.96 6.11 4.48 1.80 0.71 1.32 5.71 0.00 1.98 2.99 1.22 15.92 0.00 3.72 24.91 13.74 9.96 51 E11_Aa NovelBoundary 0 18.37 9.74 4.61 2.06 20.29 14.59 4.06 13.47 8.91 0.00 0.00 0.00 0.00 0.00 0.00 7.95 4.77 14.18 0.00 5.94 19.40 14.57 31.67 52 ER11a ExonRegion 0 86.51 46.01 67.97 52.52 53.85 75.04 60.45 84.98 84.38 35.26 263.12 199.48 323.72 192.12 112.82 109.97 136.22 148.45 33.54 95.93 825.27 412.80 293.64 53 E11_Da NovelBoundary 0 6.52 2.76 1.83 0.00 0.00 0.00 4.02 3.45 0.00 2.95 2.00 0.00 6.17 0.00 4.45 12.48 18.51 3.44 0.00 0.00 8.65 11.82 11.18 54 E11a_E12a KnownJunction 0 111.80 36.31 67.56 46.38 95.59 166.21 60.15 81.82 89.41 33.98 290.55 195.21 199.66 170.76 94.94 124.75 111.27 182.23 47.15 99.90 745.47 347.01 269.06 55 ER12a ExonRegion 0 24.42 8.28 8.95 7.51 11.88 16.95 11.29 11.08 12.16 6.28 31.13 23.41 31.46 24.75 18.30 19.25 14.99 27.14 8.49 11.66 94.40 63.39 50.98 56 ER12b ExonRegion 0 3.97 0.51 1.07 2.90 6.02 5.96 2.98 0.43 0.77 1.29 3.62 4.87 3.52 2.44 5.08 2.23 0.00 0.00 0.00 0.53 0.00 9.38 0.00