Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 YAF2 Gene 0 29.03 92.55 26.93 54.20 81.94 59.77 49.83 46.28 36.71 42.44 20.31 65.95 39.51 25.87 28.54 24.24 18.25 14.39 11.16 32.54 6.36 35.76 10.98 2 327791 Transcript 1 16.67 16.97 18.56 16.75 0.00 14.95 8.50 22.43 16.13 20.71 50.81 3.15 6.17 87.18 49.78 64.74 43.84 25.16 8.52 27.45 22.70 26.06 13.79 3 380788 Transcript 0 22.08 32.32 14.18 18.69 20.03 26.30 20.75 28.79 15.59 9.32 28.92 8.74 13.44 21.06 11.23 18.17 6.12 30.36 18.26 28.50 12.34 11.53 10.48 4 442791 Transcript 0 0.00 0.00 0.00 0.00 7.72 0.00 0.00 2.14 8.71 2.98 0.00 0.00 0.00 4.71 0.00 6.92 12.44 3.40 0.00 2.68 6.30 5.63 0.00 5 380790 Transcript 0 4.57 6.89 10.59 10.80 13.25 14.44 9.18 7.74 7.92 8.22 11.89 13.03 5.01 6.26 7.69 10.26 10.25 15.24 8.22 6.16 1.09 1.03 2.85 6 ER1a ExonRegion 0 4.88 5.01 0.75 0.00 0.00 2.82 5.60 0.00 0.00 0.88 1.34 0.00 0.00 3.25 1.79 0.46 3.81 0.00 0.00 0.00 0.68 2.08 0.00 7 ER1b ExonRegion 1 42.30 45.57 11.89 10.72 127.78 144.73 125.66 8.07 7.64 8.62 44.46 0.00 1.04 74.03 54.59 110.89 66.14 21.51 18.09 23.80 28.27 20.78 28.17 8 E1a_E2a KnownJunction 0 66.97 54.53 26.55 23.61 159.34 132.08 72.56 26.16 20.46 19.34 50.80 0.00 6.49 27.49 67.12 68.44 74.52 66.62 33.32 37.90 40.46 22.11 27.83 9 E2_Aa NovelBoundary 0 3.63 0.00 0.00 0.00 4.07 25.38 11.70 1.81 0.00 0.00 2.47 6.30 0.00 0.00 0.00 0.00 3.74 1.91 0.00 11.44 0.00 3.12 3.41 10 ER2a ExonRegion 1 17.64 23.85 24.24 20.29 29.07 33.45 18.90 21.21 21.40 24.26 66.58 13.40 10.72 74.44 52.89 52.81 71.99 27.57 26.44 37.13 41.36 27.20 17.57 11 E2a_E3a KnownJunction 0 9.33 8.55 9.25 3.16 7.30 14.14 2.08 5.87 12.33 3.98 2.68 6.30 19.97 11.77 17.43 23.50 8.98 10.61 4.80 3.26 5.37 5.69 3.24 12 E2a_E6a KnownJunction 1 28.45 28.94 36.37 33.50 0.00 27.09 11.39 44.85 32.26 40.53 100.29 6.30 12.34 171.11 97.78 129.03 83.87 50.32 17.04 54.90 44.73 50.03 27.57 13 I2 Intron 0 7.47 7.91 3.98 9.43 9.69 3.95 21.07 7.87 4.72 5.78 4.28 20.50 21.17 5.11 6.25 9.65 10.39 4.49 4.11 12.14 0.95 3.14 3.72 14 I2_SR1 SilentIntronRegion 0 3.79 3.12 3.62 6.44 6.49 3.80 17.62 4.39 4.82 3.82 3.84 31.04 26.76 6.49 4.91 6.57 10.20 3.40 1.95 12.05 0.90 2.37 1.91 15 I2_AR2 ActiveIntronRegion 0 4.66 5.55 3.20 5.25 6.86 4.03 19.78 5.79 4.75 4.13 10.64 22.81 20.31 7.20 5.56 11.51 14.63 7.95 6.18 10.80 1.58 2.02 5.59 16 I2_AR3 ActiveIntronRegion 0 4.42 4.71 2.54 8.10 6.45 2.81 17.00 6.09 3.58 3.17 5.55 31.61 19.69 3.20 4.73 8.27 9.95 2.35 3.69 13.91 0.51 1.26 3.00 17 I2_SR3 SilentIntronRegion 0 5.50 2.76 3.20 7.96 13.05 6.41 36.28 6.53 4.04 3.33 3.07 16.08 19.30 2.79 7.11 8.46 11.42 3.22 5.78 10.30 0.90 1.92 3.34 18 I2_AR4 ActiveIntronRegion 0 18.82 7.02 6.41 7.33 7.04 2.38 21.09 4.13 1.69 1.33 2.74 19.44 24.72 3.46 6.64 1.72 9.47 5.69 1.72 11.81 1.56 1.06 3.61 19 I2_AR5 ActiveIntronRegion 1 17.62 3.72 5.78 7.92 10.86 3.93 17.37 4.79 1.48 1.50 2.23 12.27 38.79 4.85 8.53 8.23 5.59 5.13 2.39 9.46 0.89 1.07 4.18 20 I2_SR4 SilentIntronRegion 0 7.05 8.62 3.60 9.03 7.53 2.44 17.85 5.95 3.87 5.44 3.36 18.92 20.12 4.99 5.20 10.32 10.22 4.20 3.76 12.44 0.87 3.49 3.60 21 I2_AR8 ActiveIntronRegion 0 11.37 20.24 6.97 17.75 15.99 6.01 21.63 20.84 11.32 16.08 3.94 16.01 24.49 6.22 8.96 8.50 8.93 6.35 2.45 16.20 0.31 6.95 3.14 22 I2_SR5 SilentIntronRegion 0 22.77 24.00 7.55 23.19 29.51 7.84 24.28 24.57 8.88 15.88 2.53 15.82 26.24 6.35 13.14 13.50 6.02 5.03 4.81 11.19 1.11 7.98 6.63 23 I2_AR9 ActiveIntronRegion 0 30.87 23.51 15.54 30.79 26.06 9.57 29.88 35.22 12.48 20.63 2.28 23.29 21.91 9.93 19.85 15.49 7.79 8.51 7.26 15.78 1.30 6.99 8.50 24 E3_Aa NovelBoundary 0 25.63 23.48 43.40 46.45 59.42 43.95 46.64 44.85 34.92 42.95 23.11 51.47 13.64 2.30 24.11 36.40 30.67 24.42 16.38 40.20 15.88 5.76 15.45 25 ER3a ExonRegion 0 14.05 21.10 15.59 17.83 36.16 24.07 39.37 25.95 17.10 11.52 16.70 25.86 22.60 26.03 30.22 36.12 19.85 31.41 9.69 28.99 12.82 11.52 17.29 26 E3_Da NovelBoundary 1 7.56 10.98 30.57 42.88 10.70 0.00 8.13 51.92 19.13 56.01 0.00 11.40 6.82 0.00 21.26 17.00 31.51 24.91 3.67 3.26 0.00 0.00 11.95 27 E3a_E4a KnownJunction 0 39.12 48.54 22.59 31.53 31.66 39.52 31.97 48.14 24.16 15.04 42.33 11.85 20.29 33.26 15.08 24.78 8.32 47.13 26.35 41.42 17.30 17.08 14.85 28 E3a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 7.72 0.00 0.00 2.14 8.71 2.98 0.00 0.00 0.00 4.71 0.00 6.92 12.44 3.40 0.00 2.68 6.30 5.63 0.00 29 I3 Intron 0 3.48 6.69 2.00 5.57 4.40 2.01 17.43 8.47 2.02 3.75 0.00 9.78 8.93 0.00 9.45 13.04 5.43 3.54 8.73 4.67 3.63 2.29 3.22 30 I3_SR1 SilentIntronRegion 0 3.56 6.82 2.05 5.68 4.50 2.04 17.74 8.62 2.06 3.83 0.00 9.99 9.07 0.00 9.63 13.29 5.55 3.61 8.93 4.72 3.66 2.34 3.23 31 E4_Aa NovelBoundary 0 9.71 8.55 6.83 10.39 7.64 0.00 17.36 19.67 5.09 6.93 0.00 0.00 15.42 4.59 0.00 4.36 16.92 2.07 0.00 0.00 0.00 0.00 7.09 32 ER4a ExonRegion 0 5.03 16.10 5.76 5.86 8.39 13.08 9.52 9.44 7.01 3.60 15.52 5.62 6.59 8.87 7.37 11.57 3.93 13.58 10.16 15.58 7.39 5.97 6.11 33 E4_Da NovelBoundary 0 62.68 42.30 9.37 16.68 62.31 47.08 60.02 25.06 28.91 15.15 26.32 25.21 26.78 43.38 43.39 43.15 21.60 35.19 11.39 40.01 25.33 20.08 20.49 34 I4_AR1 ActiveIntronRegion 0 17.03 7.42 1.03 3.05 10.45 5.88 11.31 0.00 1.96 0.00 3.10 12.85 9.23 17.32 16.26 14.86 18.39 0.00 2.58 5.03 0.00 5.03 7.13 35 I4_AR2 ActiveIntronRegion 0 5.52 3.60 3.04 11.27 8.23 1.10 20.13 4.23 1.53 4.35 2.70 14.78 9.23 1.04 7.70 5.22 10.72 0.84 2.65 9.26 0.14 1.26 1.18 36 E5_Aa NovelBoundary 0 21.34 6.18 0.00 15.65 12.82 2.56 20.98 10.35 4.66 6.47 5.26 7.65 28.57 0.00 8.90 8.72 8.23 2.57 0.00 8.12 2.66 0.00 3.67 37 ER5a ExonRegion 0 9.14 7.20 7.72 11.68 14.87 12.82 16.69 10.97 7.16 6.86 13.94 26.06 10.01 10.06 4.63 12.06 16.66 11.34 11.64 6.63 2.18 2.06 1.86 38 E5_Da NovelBoundary 0 0.00 18.62 4.20 3.46 4.33 2.90 38.73 12.86 0.00 7.95 0.00 5.85 14.45 0.00 0.00 15.55 12.62 0.00 0.00 5.62 5.87 0.00 0.00 39 E5a_E6a KnownJunction 0 0.00 6.58 13.45 9.92 11.63 16.07 1.68 4.52 8.68 9.59 9.84 0.00 0.00 2.47 10.75 8.46 3.83 19.15 4.80 5.69 0.00 0.00 3.84 40 I5_SR1 SilentIntronRegion 0 9.29 8.73 3.56 10.41 8.00 3.69 17.59 10.51 5.93 7.10 0.79 10.87 10.92 1.06 5.17 7.13 7.19 3.92 3.03 8.68 0.94 0.40 3.23 41 I5_AR1 ActiveIntronRegion 0 7.40 9.59 3.44 14.11 13.18 3.79 17.48 6.77 3.34 5.28 0.00 15.55 10.47 0.27 4.54 4.08 0.88 1.03 2.49 5.40 0.99 0.47 1.31 42 I5_AR2 ActiveIntronRegion 0 16.54 15.80 8.77 17.31 17.77 3.77 10.18 9.41 7.43 7.64 3.07 7.55 18.89 2.37 6.42 0.00 2.40 2.06 5.19 7.26 0.00 2.29 0.59 43 I5_SR3 SilentIntronRegion 0 10.64 10.99 5.23 7.20 13.49 2.76 12.12 7.15 3.55 4.44 1.07 8.77 6.79 1.13 3.82 5.14 4.84 2.95 3.26 4.55 0.61 1.77 3.03 44 I5_AR3 ActiveIntronRegion 0 12.06 17.17 10.72 11.22 12.31 4.08 18.59 11.83 5.98 5.16 2.58 14.72 8.89 2.89 5.12 7.41 4.09 4.98 2.95 5.84 2.47 5.12 6.12 45 I5_SR4 SilentIntronRegion 0 1.79 11.49 4.23 11.03 8.65 4.60 18.58 11.97 4.16 7.45 1.83 11.32 4.61 1.88 1.38 2.04 3.23 2.59 1.12 7.92 0.81 4.94 0.85 46 E6_Aa NovelBoundary 0 25.19 7.96 8.19 8.72 19.69 2.16 5.92 14.99 9.03 0.00 0.00 0.00 13.15 2.12 0.00 0.00 9.35 3.77 0.00 11.76 0.00 2.57 0.00 47 ER6a ExonRegion 0 46.78 63.80 45.07 40.74 129.14 126.72 108.69 55.04 47.75 48.36 119.41 79.80 65.20 135.84 131.31 163.45 102.48 65.14 47.20 70.87 44.07 79.53 52.65 48 E6a_E7a KnownJunction 0 72.98 162.54 90.09 70.19 237.61 255.02 202.80 118.29 97.68 92.49 157.46 170.91 117.04 150.80 131.03 168.25 136.79 86.22 69.93 114.35 47.01 158.17 52.41 49 ER7a ExonRegion 0 45.50 117.34 39.86 65.65 109.97 76.90 71.57 67.31 51.18 57.16 23.55 123.56 77.16 34.95 42.59 28.30 19.56 13.59 12.41 38.73 4.23 63.43 13.27 50 E7_Da KnownBoundary 1 14.30 83.80 21.11 58.80 43.80 30.32 27.03 25.47 27.89 50.39 0.00 43.36 49.83 17.31 4.45 0.00 0.00 7.67 12.42 34.90 0.00 9.31 3.84 51 ER7b ExonRegion 0 14.78 87.58 16.34 53.63 60.99 41.87 27.08 32.99 27.76 35.00 6.13 22.82 9.15 4.87 6.49 4.55 5.23 9.58 5.98 25.89 2.15 11.31 4.83