Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC215219.2 Gene 0 14.54 21.76 52.19 41.91 12.35 43.66 8.51 58.35 29.87 63.01 25.29 5.45 4.31 27.60 35.21 12.24 17.22 49.36 18.71 15.95 38.53 35.51 25.10 2 400706 Transcript 0 12.38 19.18 41.12 36.83 10.76 27.64 7.50 45.67 19.52 55.04 21.71 7.57 3.89 26.76 36.62 15.12 11.49 39.89 15.93 12.20 30.81 27.08 27.26 3 400806 Transcript 0 44.34 12.00 2.75 21.42 7.65 37.27 8.34 45.35 46.70 4.86 12.84 7.68 2.61 18.24 11.85 1.34 1.16 2.87 1.43 10.49 49.51 24.91 11.68 4 ER1a ExonRegion 0 0.78 0.75 0.67 1.56 0.00 1.40 0.00 4.76 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.81 0.00 0.00 5 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 E2_Aa NovelBoundary 0 3.63 15.13 4.67 1.96 0.00 2.90 0.00 10.80 5.70 14.45 2.26 0.00 0.00 0.00 0.00 0.00 0.00 18.82 0.00 6.14 3.03 3.00 0.00 7 ER2a ExonRegion 0 18.16 12.45 0.20 0.00 3.48 69.28 15.83 1.28 1.41 0.16 0.00 0.00 0.75 0.71 3.60 0.00 0.00 2.96 0.00 0.00 0.00 1.08 3.99 8 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 I2_AR2 ActiveIntronRegion 0 1.46 6.53 6.54 4.24 1.25 9.85 10.23 13.22 2.48 26.77 14.14 9.86 7.35 9.91 7.51 2.31 3.59 14.96 9.63 2.76 2.89 5.18 7.04 10 I2_SR3 SilentIntronRegion 0 1.09 6.76 7.96 8.89 3.57 8.37 10.12 12.69 4.93 26.44 7.95 7.69 3.86 7.13 6.98 7.33 5.77 12.82 14.10 2.24 5.78 6.46 15.54 11 ER3a ExonRegion 0 18.76 17.51 5.45 3.90 4.19 66.90 10.20 11.74 9.06 1.04 0.67 0.00 1.04 2.60 9.10 1.72 0.36 11.22 6.58 3.43 1.13 8.94 7.04 12 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 I3 Intron 0 8.71 11.28 12.52 12.34 7.50 22.56 14.19 16.22 10.91 48.75 19.05 10.26 7.10 24.65 17.19 16.21 14.03 53.30 26.16 17.07 22.86 22.95 29.27 14 I3_SR1 SilentIntronRegion 0 5.54 8.13 13.38 15.40 8.21 19.85 12.43 17.22 12.90 53.87 21.82 9.31 8.71 24.05 16.53 15.32 12.56 56.75 25.20 17.62 26.64 21.30 27.11 15 I3_AR2 ActiveIntronRegion 0 24.26 21.14 27.51 17.98 11.71 65.85 39.64 31.20 21.85 110.14 45.28 30.41 13.42 79.62 54.48 51.16 49.30 143.94 84.46 53.81 53.68 74.84 95.30 16 I3_AR3 ActiveIntronRegion 0 26.22 25.19 31.74 13.19 26.15 90.51 51.38 42.15 29.08 114.51 51.44 27.93 6.81 72.46 64.01 59.44 50.05 146.09 79.02 35.35 58.86 67.08 93.50 17 I3_SR2 SilentIntronRegion 0 18.05 23.92 32.29 14.35 23.92 94.28 44.70 42.30 25.14 104.84 45.82 18.34 17.66 77.58 53.42 70.63 71.26 145.65 66.52 34.17 54.31 47.80 97.08 18 I3_AR4 ActiveIntronRegion 0 15.76 23.61 35.33 20.22 14.72 84.66 43.98 42.35 23.47 119.72 43.49 14.43 19.54 67.22 44.16 67.37 68.40 130.57 63.18 40.90 49.22 41.90 95.77 19 I3_SR3 SilentIntronRegion 0 17.82 33.72 25.54 20.75 14.07 75.36 41.38 42.15 19.68 123.98 40.84 15.64 17.25 60.72 55.31 41.80 44.08 125.41 52.71 48.73 31.35 56.59 75.03 20 I3_AR5 ActiveIntronRegion 0 17.57 23.44 24.69 21.29 25.03 70.98 37.22 51.98 24.27 124.12 49.28 24.67 9.63 74.28 39.77 42.03 45.27 133.65 86.82 42.27 58.41 76.96 96.25 21 I3_AR6 ActiveIntronRegion 1 20.26 31.08 12.43 7.40 23.70 47.42 40.85 30.87 13.41 79.96 35.07 21.65 4.69 68.21 15.75 20.80 32.54 57.54 57.34 17.33 47.54 53.87 65.45 22 I3_AR7 ActiveIntronRegion 1 16.72 21.45 7.60 6.00 15.52 33.01 32.37 24.80 10.50 60.90 25.03 13.85 4.69 47.02 12.62 15.60 24.26 42.22 48.74 10.74 32.06 37.50 46.25 23 I3_AR8 ActiveIntronRegion 0 4.46 6.31 1.16 2.44 4.37 14.96 20.90 13.65 3.19 24.93 11.29 4.10 2.96 12.22 3.21 0.16 9.90 22.56 18.61 2.02 16.01 10.97 12.83 24 I3_AR9 ActiveIntronRegion 0 15.89 76.35 21.91 17.21 17.77 54.30 33.40 25.56 12.57 79.78 35.26 70.02 25.83 55.76 39.34 38.48 30.02 61.15 34.87 33.84 34.23 68.14 68.76 25 I3_AR10 ActiveIntronRegion 0 19.79 36.32 26.96 13.00 10.41 31.23 20.65 19.14 10.17 106.91 28.98 35.59 9.87 24.48 19.81 23.61 30.55 103.18 44.46 28.55 36.05 46.38 50.59 26 I3_AR11 ActiveIntronRegion 0 2.27 14.38 18.03 13.77 1.91 5.17 3.07 17.72 9.70 29.53 0.00 0.00 0.00 1.80 3.00 0.00 0.00 22.70 0.00 0.00 0.00 0.00 0.00 27 I3_SR5 SilentIntronRegion 0 0.69 1.83 6.35 2.06 2.26 5.57 2.64 1.30 0.96 6.22 3.19 0.73 1.36 2.20 4.93 2.72 0.56 18.03 6.15 1.98 3.98 4.69 4.20 28 ER4a ExonRegion 0 1.40 4.83 23.16 23.28 5.59 13.57 0.76 36.36 29.19 26.29 20.36 0.54 0.00 26.86 32.87 9.16 23.67 20.56 16.04 16.76 35.85 37.91 24.62 29 E4_Da NovelBoundary 0 0.00 6.71 11.00 2.06 0.00 10.79 1.85 2.55 0.00 35.75 2.68 0.00 0.00 2.41 0.00 3.85 0.00 23.79 4.14 0.00 0.00 8.08 15.62 30 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER5a ExonRegion 0 41.37 70.46 87.72 79.00 58.52 192.91 30.81 111.66 85.01 99.17 52.53 20.15 12.12 73.05 76.44 24.63 45.74 103.76 54.19 41.66 104.61 86.35 63.49 32 E5a_E6a KnownJunction 0 115.87 20.33 0.00 52.04 14.43 62.80 15.85 119.53 133.27 0.00 25.95 21.61 6.66 40.44 23.61 0.00 0.00 0.00 0.00 23.27 115.89 58.05 14.94 33 E5a_E6b KnownJunction 0 63.94 76.76 108.10 99.52 44.48 96.19 17.27 162.61 32.99 168.48 59.65 37.96 13.47 109.84 71.33 63.06 27.49 107.61 41.22 46.85 71.60 64.72 93.81 34 E6_Aa NovelBoundary 0 7.04 6.05 8.60 2.93 3.65 21.58 2.21 10.19 10.42 10.61 5.05 0.00 0.00 0.00 0.00 13.50 8.88 20.02 17.51 2.43 21.37 4.78 7.17 35 E6_Ab NovelBoundary 0 23.71 12.83 0.00 34.06 20.63 26.18 9.76 63.71 62.44 1.29 18.69 5.70 12.34 9.54 8.90 0.00 0.00 2.07 0.00 15.92 57.89 25.35 30.13 36 ER6a ExonRegion 0 75.14 22.98 11.15 48.66 20.34 50.25 9.00 96.45 94.24 15.48 35.37 16.02 5.63 42.39 23.21 4.76 2.97 10.72 4.14 26.60 111.95 54.59 25.84 37 ER6b ExonRegion 0 45.81 45.62 96.00 83.93 28.78 59.05 9.44 96.19 70.55 124.73 63.51 23.47 14.51 71.84 61.67 18.02 23.86 110.35 50.15 33.53 94.51 74.49 60.75 38 E6_Da KnownBoundary 0 0.00 6.71 0.00 5.89 0.00 5.79 0.00 0.00 1.59 4.81 0.00 0.00 0.00 3.00 0.00 4.36 0.00 2.45 4.80 12.98 6.30 6.25 0.00 39 E6a_E7a KnownJunction 0 0.00 0.00 7.24 27.44 0.00 0.00 0.00 9.86 8.68 13.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.80 0.00 0.00 0.00 0.00 0.00 40 ER6c ExonRegion 0 12.53 4.23 2.43 6.39 0.00 4.03 1.01 9.49 4.58 8.68 2.88 0.76 0.00 7.67 8.82 1.92 2.85 0.65 3.00 2.59 19.70 10.83 13.65 41 ER7a ExonRegion 0 11.29 22.71 49.26 39.93 9.67 38.91 9.60 54.47 18.46 67.92 34.43 8.86 8.95 31.87 33.56 17.22 14.88 62.12 17.88 15.07 24.04 38.12 30.43 42 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER8a ExonRegion 0 19.34 29.40 44.05 25.23 8.78 33.15 7.43 69.55 22.56 77.51 16.10 2.31 3.51 16.46 18.51 5.25 24.05 43.59 13.45 10.56 37.95 23.06 10.16 44 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 ER9a ExonRegion 0 10.00 16.15 11.44 12.01 11.19 18.02 6.54 30.38 17.35 16.30 8.22 3.78 6.14 11.86 19.20 6.65 9.13 11.76 2.60 12.74 20.66 11.39 13.96 46 E9_Da NovelBoundary 0 47.27 21.64 7.72 19.54 12.39 24.36 14.00 37.34 9.46 24.90 7.37 0.00 0.00 22.84 15.08 8.46 9.16 25.16 8.75 9.33 8.96 48.68 15.02 47 E9a_E10a KnownJunction 0 54.08 19.08 20.96 41.49 44.23 69.34 21.24 87.08 56.74 33.47 22.58 23.41 12.66 34.96 88.88 42.13 30.95 45.18 4.80 27.29 37.81 53.15 48.83 48 ER10a ExonRegion 0 3.56 5.25 65.69 55.70 5.32 20.06 2.47 78.58 40.44 60.02 28.64 1.58 0.67 21.80 43.42 19.00 22.52 43.25 14.39 18.34 40.06 31.35 20.33 49 E10_Da NovelBoundary 0 3.04 6.18 29.69 15.38 3.48 38.27 14.49 16.55 2.89 17.68 5.37 0.00 0.00 2.47 10.51 4.36 0.00 28.64 4.71 5.94 2.47 14.88 7.17 50 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 ER11a ExonRegion 0 1.41 25.52 85.58 79.78 5.08 23.25 5.87 71.47 38.09 125.20 51.46 6.84 2.85 59.50 84.01 38.98 21.43 83.84 44.87 20.57 73.01 76.12 61.29 52 E11_Da NovelBoundary 0 0.00 2.96 17.77 3.36 0.00 27.77 6.14 0.00 7.84 12.95 4.32 0.00 0.00 0.00 13.97 4.19 0.00 19.03 0.00 3.26 0.00 5.51 4.27 53 E11a_E12a KnownJunction 0 14.97 75.45 134.47 105.21 23.85 84.55 33.83 40.21 29.75 166.06 75.02 26.11 7.47 87.65 145.99 19.99 4.77 116.86 81.88 14.57 122.07 67.11 105.85 54 ER12a ExonRegion 0 6.33 16.57 89.33 64.52 8.75 29.77 8.20 76.04 25.63 97.59 29.58 2.66 2.70 27.50 44.40 14.56 17.18 69.41 17.78 16.19 34.15 41.17 24.22