Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TAPBPL Gene 0 65.85 8.05 14.92 28.09 31.69 22.16 14.92 25.90 29.50 21.33 80.09 76.03 102.86 114.46 269.98 179.09 141.52 11.56 13.60 17.47 81.06 18.12 29.93 2 266556 Transcript 0 72.80 4.91 21.37 38.26 35.13 25.69 14.45 33.54 35.48 28.08 119.72 101.80 161.73 141.28 396.82 252.81 211.83 8.61 15.87 16.46 116.18 21.42 38.71 3 431620 Transcript 0 310.41 343.82 1424.42 1554.33 189.61 192.49 305.40 1588.76 1487.36 1342.56 132.09 59.31 84.77 46.42 114.29 337.78 246.00 2207.03 249.37 378.97 182.81 166.16 335.94 4 IG12 Intergenic 0 3.33 1.42 2.23 4.26 3.27 1.60 1.39 1.35 2.89 4.18 8.78 6.27 3.37 14.75 7.15 9.86 6.34 2.89 1.67 2.60 5.39 1.82 0.51 5 IG12_AR1 ActiveIntergenicRegion 0 3.35 1.43 2.25 4.29 3.29 1.60 1.40 1.36 2.91 4.21 8.84 6.32 3.40 14.84 7.20 9.93 6.39 2.91 1.68 2.62 5.43 1.83 0.52 6 ER1a ExonRegion 1 46.42 2.06 4.24 10.65 28.84 22.41 8.50 5.52 14.59 8.81 51.11 9.71 13.67 53.83 114.34 105.92 87.26 6.86 8.35 9.23 98.24 8.61 24.40 7 E1a_E2a KnownJunction 0 2.74 0.00 8.60 16.95 6.71 2.73 0.00 4.03 23.90 15.20 66.54 30.91 63.47 109.25 306.32 157.82 134.46 5.76 4.80 4.99 64.93 25.11 54.72 8 ER2a ExonRegion 0 30.57 2.69 17.15 26.14 50.98 41.68 14.35 25.35 29.94 23.80 103.10 42.43 70.31 133.97 310.31 229.73 167.67 10.97 16.78 15.07 88.69 22.96 31.57 9 E2a_E3a KnownJunction 0 68.68 0.00 23.45 20.94 32.85 34.18 27.87 37.46 28.85 26.38 142.51 78.63 116.55 160.34 327.09 271.72 194.30 10.69 21.93 17.07 106.94 23.02 37.30 10 ER3a ExonRegion 0 83.19 4.97 19.88 36.70 23.75 32.24 12.94 41.60 49.68 30.04 128.67 98.95 126.61 183.07 359.57 258.39 221.29 11.48 19.68 22.36 113.51 26.13 38.43 11 E3_Da NovelBoundary 0 6.74 0.00 1.77 4.56 4.24 0.00 4.15 5.59 3.59 1.34 7.69 0.00 6.82 18.25 8.90 17.09 13.37 2.11 16.94 5.11 5.50 6.25 4.27 12 E3a_E7a KnownJunction 0 126.62 6.31 19.69 83.51 44.40 37.54 30.30 40.54 45.11 25.60 170.94 68.72 104.54 186.59 480.75 354.52 343.52 13.60 51.11 33.81 156.98 19.53 72.47 13 I3 Intron 0 11.82 1.67 0.94 3.23 7.68 1.41 3.33 4.75 3.58 3.50 7.43 27.32 9.11 10.32 14.06 16.91 7.44 2.31 1.63 1.96 1.13 2.03 3.61 14 I3_AR1 ActiveIntronRegion 0 15.38 1.59 1.53 4.08 6.18 1.79 3.88 4.54 4.48 5.12 8.18 34.96 9.16 12.97 20.34 21.39 12.46 2.42 1.34 1.94 1.23 2.41 3.87 15 I3_SR2 SilentIntronRegion 0 11.50 2.08 0.60 3.23 10.03 1.00 3.60 6.27 3.32 3.26 6.66 26.02 10.93 8.40 11.80 15.03 5.02 1.61 1.04 2.43 0.96 1.97 3.37 16 E4_Aa NovelBoundary 0 62.60 67.62 15.29 37.22 80.98 39.07 75.47 25.88 25.32 10.53 19.74 30.46 26.46 29.31 29.42 36.83 40.67 26.70 51.58 52.03 14.58 15.12 52.75 17 ER4a ExonRegion 0 16.11 17.33 4.64 8.27 14.98 4.68 22.27 9.20 5.61 5.22 3.94 11.04 20.07 8.12 10.01 15.16 10.10 12.18 8.12 14.06 11.22 4.25 9.02 18 E4_Da NovelBoundary 1 496.24 415.39 78.44 102.68 219.78 217.66 380.68 59.76 73.41 48.08 126.24 235.13 179.70 151.57 330.55 561.65 269.75 194.87 363.68 500.54 165.25 167.41 434.24 19 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER5a ExonRegion 0 1.41 4.07 0.20 0.45 0.45 0.00 0.00 0.29 0.00 0.00 0.00 4.33 0.00 0.54 0.00 0.50 0.00 0.00 0.00 0.35 0.37 0.00 0.00 21 E6_Aa NovelBoundary 0 2238.25 1534.13 779.39 859.23 1089.39 1138.55 1286.95 941.09 920.79 795.49 461.75 194.01 311.51 362.06 342.54 1050.58 1054.04 979.50 958.43 1224.01 630.25 387.42 934.56 22 ER6a ExonRegion 0 40.34 37.54 22.28 26.68 20.91 10.31 44.75 18.54 25.91 19.78 15.74 30.57 39.22 21.24 63.12 58.59 33.07 49.46 28.92 58.60 23.33 18.76 65.83 23 E6_Da NovelBoundary 0 37.86 5.92 3.40 1.23 0.00 0.00 3.89 1.52 4.14 2.66 0.00 6.30 19.64 6.89 5.19 17.94 16.92 2.16 3.29 5.69 3.03 0.00 6.74 24 E6a_E7b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 I6 Intron 0 17.49 2.15 0.64 3.93 4.71 2.58 1.63 1.36 2.27 2.71 2.03 7.57 2.04 8.54 13.39 6.81 4.06 0.97 1.68 0.37 2.33 1.83 2.07 26 I6_AR1 ActiveIntronRegion 0 30.57 4.05 1.23 5.74 1.76 0.82 2.49 2.39 4.16 4.73 2.52 12.48 4.54 10.98 16.50 11.17 6.70 1.86 3.61 0.00 3.55 0.83 3.76 27 ER7a ExonRegion 0 53.37 4.23 19.74 35.74 39.18 21.60 12.10 34.98 35.96 26.06 102.27 95.84 106.24 159.16 421.75 236.66 193.89 13.33 13.08 15.49 113.28 16.79 34.52 28 E7_Ab KnownBoundary 0 106.02 18.62 21.64 38.36 48.98 32.54 7.64 40.54 39.87 23.18 103.29 97.38 52.59 187.18 547.01 236.01 220.38 10.49 8.28 14.19 104.28 21.86 33.55 29 ER7b ExonRegion 0 121.97 12.42 33.54 47.52 46.59 36.09 16.13 40.68 41.94 30.02 121.72 105.00 77.92 173.76 476.81 241.38 239.51 10.86 10.15 18.55 106.89 34.34 20.24 30 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 E7a_E11a KnownJunction 0 163.51 9.01 45.09 57.83 68.59 41.34 22.61 49.04 42.01 47.09 151.20 75.92 147.07 146.39 623.40 328.89 305.94 10.36 9.51 20.26 131.34 39.50 36.88 32 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 ER8a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.75 0.00 0.00 0.38 0.39 0.14 0.00 0.00 0.00 0.00 0.00 0.00 34 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 ER9a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 E10a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 ER10a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER11a ExonRegion 0 87.92 6.62 25.09 46.22 42.68 25.13 16.64 43.31 48.67 32.03 123.50 117.91 175.06 174.62 477.95 266.96 217.70 11.14 15.04 19.30 116.24 28.30 33.61 39 E11_Da NovelBoundary 0 67.12 3.35 5.00 19.81 24.02 23.85 15.02 13.06 25.00 14.91 31.48 12.45 0.00 58.63 93.58 97.15 75.92 13.85 13.74 9.33 14.46 0.00 12.80 40 E11a_E16a KnownJunction 1 31.78 6.18 23.33 29.67 33.28 17.32 7.02 47.65 34.87 25.87 101.76 212.92 453.38 86.53 428.70 279.07 160.26 8.42 16.00 9.20 119.91 12.00 33.21 41 I11 Intron 0 12.87 2.06 1.23 8.23 14.46 14.86 6.26 6.09 6.84 2.89 22.20 12.04 11.74 42.82 31.64 41.16 33.51 3.72 0.00 3.59 7.44 1.41 4.96 42 I11_SR1 SilentIntronRegion 1 13.04 2.09 1.25 8.34 14.65 15.06 6.34 6.17 6.93 2.92 22.49 12.17 11.87 43.38 32.07 41.69 33.96 3.77 0.00 3.64 7.53 1.43 5.03 43 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 ER12a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.84 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 E13_Aa NovelBoundary 0 35.04 0.00 1.12 22.11 7.30 0.00 3.80 7.39 16.72 12.84 27.59 24.76 55.68 61.22 69.60 28.28 38.52 7.05 4.14 12.21 9.33 6.12 11.01 46 ER13a ExonRegion 1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.31 8.83 19.19 27.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 E13_Da NovelBoundary 1 96.39 15.19 5.29 16.08 33.87 25.61 12.90 18.89 16.93 24.28 29.74 72.77 61.03 83.17 77.01 122.96 96.96 2.40 4.61 6.39 5.93 0.00 8.37 48 E13a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 I13 Intron 0 8.47 4.07 0.91 2.03 20.07 1.83 6.62 1.29 4.60 0.00 13.53 25.98 28.28 23.02 26.28 14.86 11.55 1.38 3.19 1.06 3.31 5.21 1.47 50 I13_SR1 SilentIntronRegion 0 8.47 4.07 0.91 2.03 20.07 1.83 6.62 1.29 4.60 0.00 13.53 25.98 28.28 23.02 26.28 14.86 11.55 1.38 3.19 1.06 3.31 5.21 1.47 51 ER14a ExonRegion 1 32.83 7.01 0.75 1.79 20.18 9.93 4.26 1.94 7.06 2.27 15.40 42.59 31.25 48.69 41.47 26.85 11.05 3.82 0.00 4.51 2.25 8.74 5.59 52 E14_Da NovelBoundary 0 443.12 446.83 810.94 864.89 307.13 223.96 436.33 940.84 806.33 963.27 110.29 165.05 215.08 148.80 216.58 432.45 310.99 1106.10 411.96 524.76 241.43 161.41 509.28 53 E14a_E15a KnownJunction 0 5751.76 6452.67 27030.42 29479.53 3521.73 3617.92 5711.30 30144.28 28204.02 25470.26 2445.83 983.72 1464.19 703.69 1949.94 6208.71 4566.24 41857.55 4682.77 7105.61 3424.13 3114.40 6287.76 54 I14 Intron 0 48.79 4.10 5.79 14.64 29.30 13.74 11.44 6.68 18.56 10.83 39.54 50.19 49.29 76.80 82.56 91.63 51.36 9.53 3.67 5.52 10.16 7.20 6.77 55 I14_SR1 SilentIntronRegion 0 48.79 4.10 5.79 14.64 29.30 13.74 11.44 6.68 18.56 10.83 39.54 50.19 49.29 76.80 82.56 91.63 51.36 9.53 3.67 5.52 10.16 7.20 6.77 56 E15_Aa NovelBoundary 0 1674.37 1455.73 2340.93 2499.65 1046.61 939.74 1506.17 2758.00 2523.85 2052.79 805.84 533.12 549.96 515.98 537.61 1638.97 1358.30 3845.51 1216.32 1640.31 822.32 610.19 1715.54 57 ER15a ExonRegion 0 55.25 13.91 5.62 15.47 24.40 14.42 19.95 12.09 17.16 11.08 28.78 37.34 47.07 79.71 78.56 107.56 53.44 10.63 18.16 17.36 12.00 10.91 14.60 58 E15_Da NovelBoundary 0 866.82 619.36 854.35 942.20 725.04 408.23 777.13 771.62 789.31 705.21 226.27 219.22 348.35 202.96 339.70 726.73 559.98 1173.63 583.08 825.30 568.41 561.08 915.43 59 I15 Intron 0 93.48 4.28 10.56 29.19 35.64 14.46 13.92 16.25 13.23 17.37 36.92 56.06 65.37 96.33 115.18 107.82 53.22 5.00 6.14 11.56 11.97 6.21 11.32 60 I15_SR1 SilentIntronRegion 0 94.43 4.32 10.67 29.49 36.01 14.61 14.07 16.42 13.35 17.55 37.31 56.64 65.95 97.29 116.28 108.91 53.77 5.03 6.20 11.68 12.10 6.27 11.41 61 E16_Aa NovelBoundary 0 53.42 2.57 8.04 51.94 43.89 25.38 23.80 6.90 22.92 15.96 34.01 68.57 47.07 79.11 174.55 125.78 62.65 9.08 8.00 9.20 11.80 6.00 19.72 62 ER16a ExonRegion 1 71.26 9.64 24.41 54.94 33.41 24.80 10.48 51.65 39.20 39.06 145.57 222.56 347.45 215.23 595.59 413.20 256.13 3.98 19.15 19.50 151.48 30.06 46.15 63 E16_Da NovelBoundary 1 63.72 6.38 9.43 16.22 0.00 21.35 11.13 17.33 18.14 12.84 15.42 24.91 73.37 69.57 74.91 77.50 30.67 6.51 0.00 0.00 11.06 4.90 0.00 64 E16a_E17a KnownJunction 0 27.26 6.18 33.26 39.29 12.22 10.68 10.73 20.87 34.98 34.28 163.88 111.79 149.02 92.24 376.04 165.34 282.84 0.00 0.00 14.32 152.03 6.06 24.84 65 I16 Intron 0 69.40 3.32 4.17 14.85 28.16 18.62 12.09 12.84 16.97 10.83 18.28 22.71 17.24 80.24 99.70 71.71 43.05 6.07 4.90 6.44 10.98 6.21 12.99 66 I16_SR1 SilentIntronRegion 0 105.20 1.41 0.98 8.18 15.41 11.39 5.37 6.08 10.31 6.35 5.68 13.31 26.41 61.67 81.51 53.53 28.87 4.36 1.71 1.63 7.40 2.11 5.26 67 I16_AR1 ActiveIntronRegion 0 66.13 3.50 4.48 15.52 29.43 19.34 12.75 13.51 17.64 11.27 19.51 23.65 16.41 82.17 101.62 73.57 44.48 6.25 5.21 6.91 11.34 6.61 13.76 68 E17_Aa NovelBoundary 0 38.75 0.00 1.18 14.92 15.87 12.32 10.78 17.21 15.36 10.58 44.27 31.36 21.75 79.58 62.18 83.31 66.01 2.57 7.91 5.94 39.97 5.63 11.78 69 ER17a ExonRegion 0 153.05 5.89 13.87 38.79 39.82 22.33 14.27 34.01 33.48 30.77 105.25 157.14 229.07 135.43 336.78 218.26 188.50 5.40 10.83 13.35 96.83 20.43 35.20