Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C1RL Gene 0 103.32 1.66 32.67 18.97 44.46 6.23 19.76 25.16 16.39 42.49 17.99 17.98 24.99 38.96 52.49 42.16 24.73 3.97 7.79 1.73 134.25 182.10 179.91 2 396661 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 266542 Transcript 0 154.01 1.89 33.71 21.74 63.96 7.80 25.85 28.78 15.00 43.11 15.26 25.30 29.40 32.47 51.94 37.00 22.89 2.82 7.16 1.51 93.17 220.46 159.62 4 ER1a ExonRegion 0 55.63 0.00 2.17 8.97 19.76 5.23 13.92 13.18 9.49 3.05 8.92 8.27 12.15 20.08 12.23 24.05 21.01 3.19 7.38 0.00 168.11 111.89 211.04 5 E1a_E2a KnownJunction 0 20.74 0.00 0.00 15.08 3.23 2.33 1.81 8.87 7.49 5.40 11.37 0.00 6.33 19.07 32.51 19.99 25.81 0.00 0.00 0.00 76.85 17.51 15.28 6 E2_Aa NovelBoundary 0 16.00 0.00 3.05 1.37 0.00 2.90 5.52 0.00 1.68 13.08 11.48 6.30 0.00 2.24 8.90 0.00 11.59 0.00 0.00 0.00 23.17 16.59 11.95 7 ER2a ExonRegion 0 22.59 0.45 16.76 13.97 13.87 4.98 8.19 14.54 18.77 32.56 25.56 5.10 6.16 38.36 44.81 49.54 26.13 4.75 13.48 0.00 189.93 119.04 205.83 8 E2a_E3a KnownJunction 0 9.71 0.00 9.58 7.49 66.04 16.75 24.78 4.35 18.06 36.21 15.06 0.00 13.47 29.78 18.17 29.31 28.80 0.00 0.00 0.00 165.25 78.32 83.49 9 I2 Intron 0 18.21 0.11 8.07 3.77 6.51 1.82 7.06 3.17 3.95 10.37 4.50 10.58 12.90 12.58 11.82 16.48 15.11 1.39 2.42 0.06 22.70 22.07 35.02 10 I2_AR1 ActiveIntronRegion 0 13.25 0.00 8.76 1.91 5.02 1.72 5.80 3.22 2.88 9.98 3.63 9.30 6.63 13.05 12.78 10.54 16.18 2.01 1.00 0.22 19.31 17.38 27.56 11 I2_SR1 SilentIntronRegion 0 15.13 0.00 7.46 4.60 6.35 2.39 8.11 2.61 4.04 9.53 5.29 13.09 19.30 10.49 10.43 18.33 14.98 0.20 1.59 0.00 20.49 22.74 33.26 12 I2_AR2 ActiveIntronRegion 0 20.10 0.00 7.78 5.55 10.53 1.50 6.23 2.93 3.82 9.98 4.67 12.54 11.53 14.61 13.17 17.99 16.21 1.70 2.51 0.00 22.82 17.39 41.82 13 I2_AR3 ActiveIntronRegion 0 51.82 0.00 4.40 3.48 6.14 1.83 12.46 5.44 8.01 13.51 5.37 15.23 7.82 15.88 20.52 22.02 15.28 1.57 0.94 0.00 36.32 31.64 61.02 14 I2_SR2 SilentIntronRegion 0 26.00 0.52 8.86 3.15 5.32 1.22 7.13 4.13 4.95 12.51 3.99 5.79 10.87 13.82 11.44 18.94 13.15 2.50 5.68 0.00 29.87 30.03 39.99 15 E3_Aa NovelBoundary 0 23.26 0.00 13.07 5.56 3.90 0.00 4.33 1.68 6.02 8.62 6.58 12.60 6.82 6.59 6.30 8.29 26.09 3.98 0.00 0.00 24.65 17.94 35.43 16 ER3a ExonRegion 0 40.15 0.26 21.76 10.56 27.81 5.62 16.86 13.64 21.95 34.44 20.04 7.93 17.85 43.24 48.50 51.43 21.53 6.85 6.84 0.46 174.80 147.44 162.63 17 E3_Da NovelBoundary 0 23.12 0.00 13.96 10.42 0.00 0.00 0.00 10.80 3.30 18.72 0.00 5.70 12.82 14.24 54.76 15.47 3.83 2.57 17.22 0.00 38.24 22.96 72.99 18 E3a_E4a KnownJunction 0 27.56 3.35 12.00 11.49 35.06 16.75 10.42 9.57 6.16 30.00 7.53 7.50 0.00 28.19 33.13 32.98 24.78 0.00 0.00 2.62 147.96 132.51 74.69 19 I3_AR1 ActiveIntronRegion 0 14.44 0.00 6.56 2.92 1.92 0.00 0.95 0.00 1.98 6.75 2.78 0.00 1.39 13.00 9.81 10.67 11.86 0.99 1.14 0.00 34.82 8.23 14.77 20 E4_Aa NovelBoundary 1 26.15 0.00 32.97 14.78 41.34 7.67 12.37 4.68 12.85 26.97 5.11 0.00 0.00 14.13 35.60 46.23 4.30 6.72 8.09 0.00 36.20 31.78 77.00 21 ER4a ExonRegion 0 42.67 1.26 32.22 13.86 28.46 2.45 12.96 35.71 19.86 37.86 23.58 11.75 24.16 42.77 62.26 33.64 28.53 1.98 3.87 1.03 203.30 184.06 195.73 22 E4_Da NovelBoundary 0 20.23 0.00 23.95 11.25 7.56 0.00 0.00 3.70 4.57 19.88 2.68 0.00 6.82 9.48 9.52 4.19 4.58 4.44 0.00 0.00 10.63 17.27 53.95 23 E4a_E5a KnownJunction 0 27.56 0.00 18.60 9.02 28.95 5.17 8.17 15.53 11.46 15.31 17.79 0.00 13.64 26.13 33.75 12.56 33.38 1.99 0.00 0.00 131.22 92.28 104.48 24 I4 Intron 0 11.57 0.00 9.98 3.70 14.62 0.00 4.34 3.75 2.68 8.72 4.93 1.30 2.81 11.73 17.90 15.16 7.21 1.68 1.16 0.00 24.89 20.49 36.37 25 I4_SR1 SilentIntronRegion 0 13.67 0.00 11.27 4.70 17.74 0.00 4.71 4.02 3.25 10.00 4.69 1.98 2.14 13.79 22.30 17.22 5.17 2.55 0.87 0.00 26.16 27.92 38.69 26 E5_Aa NovelBoundary 0 27.56 0.00 6.27 5.53 4.07 0.00 13.43 2.55 7.15 19.64 12.63 6.75 0.00 10.36 14.71 7.69 23.94 1.91 0.00 0.00 37.75 14.27 57.28 27 ER5a ExonRegion 0 39.51 0.00 19.88 10.05 22.33 3.69 12.25 20.53 8.81 16.62 15.41 2.94 20.20 44.48 49.13 38.36 15.54 0.52 1.91 1.45 150.41 134.96 128.90 28 E5_Da NovelBoundary 0 60.16 0.00 15.91 15.32 7.30 0.00 10.02 14.99 14.00 43.19 23.22 0.00 6.82 19.31 40.67 45.97 41.51 9.53 9.60 0.00 82.97 112.24 157.32 29 E5a_E6a KnownJunction 0 30.89 0.00 8.96 13.32 11.12 0.00 9.01 25.51 9.78 24.74 21.69 0.00 13.31 22.78 47.22 26.57 0.00 0.00 3.48 0.00 142.89 208.87 126.17 30 I5 Intron 0 12.94 0.21 14.35 6.47 14.70 2.73 7.41 8.07 5.67 20.72 8.04 11.68 11.68 16.89 26.04 30.69 15.94 2.13 5.07 0.11 41.07 42.91 97.44 31 I5_SR1 SilentIntronRegion 0 20.26 0.25 15.71 8.86 17.18 3.33 9.78 11.86 8.48 19.67 8.20 17.40 17.31 20.89 36.61 26.28 18.79 1.90 3.86 0.00 41.34 49.47 85.02 32 I5_SR2 SilentIntronRegion 0 7.97 0.00 15.09 5.58 15.40 2.78 5.45 5.34 3.57 23.25 8.41 6.91 8.80 14.40 18.62 31.99 13.08 2.51 5.84 0.24 40.68 38.55 106.90 33 I5_AR2 ActiveIntronRegion 0 9.97 1.44 11.32 2.40 5.69 0.74 10.81 8.45 6.24 24.75 10.20 10.94 4.56 19.49 23.81 68.69 27.78 2.49 10.75 0.00 69.23 60.54 175.67 34 E6_Aa NovelBoundary 0 31.19 0.00 31.08 11.65 11.88 2.16 1.68 12.53 5.56 48.49 12.16 6.30 8.28 32.79 77.01 85.36 42.54 7.38 37.74 0.00 77.47 104.71 551.70 35 ER6a ExonRegion 0 28.68 0.36 38.41 17.72 22.33 3.94 9.75 19.14 12.39 50.43 19.07 7.72 19.63 47.41 54.77 46.34 22.02 2.58 5.64 0.41 156.70 135.95 195.14 36 E6_Da KnownBoundary 0 10.82 0.00 31.25 34.46 8.66 0.00 10.47 29.70 25.17 56.09 15.37 0.00 24.84 64.16 56.86 80.15 22.07 2.45 13.27 0.00 193.98 168.09 259.33 37 E6a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER6b ExonRegion 0 138.20 2.16 38.44 20.87 51.37 6.22 22.19 29.11 19.36 49.32 19.26 21.91 31.34 44.85 58.89 45.96 29.09 4.11 9.32 2.29 146.02 201.32 203.72 39 E6_Ab KnownBoundary 0 5333.24 4380.47 6866.32 6678.67 4580.65 3380.50 5010.92 7150.46 6939.54 6186.95 1583.77 711.98 723.17 536.59 1304.29 4651.77 3760.91 9335.30 4341.21 4491.97 2804.75 1955.92 4565.48 40 ER6c ExonRegion 1 130.17 22.46 46.27 36.00 27.92 17.58 52.15 41.97 39.98 31.79 19.67 50.64 29.77 20.48 49.26 60.41 59.27 47.68 25.14 35.62 69.85 72.52 94.67 41 E6_Db KnownBoundary 0 951.35 1380.87 2939.93 3086.45 822.67 647.52 1002.49 3006.29 3313.16 2734.25 430.21 176.46 207.29 188.12 340.81 1135.26 787.75 4448.36 984.50 995.96 574.28 569.41 1143.95 42 ER6d ExonRegion 1 169.82 1.61 28.98 22.60 76.54 9.39 29.50 28.45 10.64 36.90 11.25 28.69 27.46 20.09 45.00 28.05 16.69 1.52 5.00 0.73 40.33 239.61 115.53 43 IG45 Intergenic 0 24.10 0.05 0.93 0.74 6.91 3.40 3.07 1.70 1.79 1.08 0.33 0.61 0.56 0.36 2.15 3.19 1.29 0.13 0.16 0.05 49.63 30.83 54.91 44 IG45_AR2 ActiveIntergenicRegion 0 4.23 0.00 0.00 0.00 0.00 3.67 0.00 3.46 1.24 0.00 0.00 0.00 0.00 0.00 0.00 3.72 0.00 0.00 0.00 0.00 0.00 14.06 0.00 45 IG45_AR1 ActiveIntergenicRegion 0 59.53 0.00 1.45 1.48 17.92 9.00 7.90 2.44 2.71 1.02 0.64 0.62 0.00 0.71 4.38 7.39 1.75 0.18 0.00 0.14 131.13 76.55 146.08